Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
SOX3P41225 AC010531.4-202ENST00000569872 1718 ntTSL 2 BASIC5.02□□□□□ -1.61
SOX3P41225 AL078621.3-201ENST00000623707 2042 ntBASIC5.02□□□□□ -1.61
SOX3P41225 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
SOX3P41225 TCP11X1-202ENST00000622971 1372 ntBASIC5.02□□□□□ -1.61
SOX3P41225 TJP1-209ENST00000545208 5007 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
SOX3P41225 AC112198.2-201ENST00000426589 6996 ntBASIC5.02□□□□□ -1.61
SOX3P41225 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
SOX3P41225 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC5.01□□□□□ -1.61
SOX3P41225 WDR17-201ENST00000280190 4705 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
SOX3P41225 AC015813.1-203ENST00000585065 4722 ntTSL 2 BASIC5.01□□□□□ -1.61
SOX3P41225 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5.01□□□□□ -1.61
SOX3P41225 ZNF568-214ENST00000616085 3542 ntTSL 5 BASIC5.01□□□□□ -1.61
SOX3P41225 PFKFB2-201ENST00000367079 3494 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SOX3P41225 SLC12A6-216ENST00000560164 3744 ntTSL 2 BASIC5.01□□□□□ -1.61
SOX3P41225 NAP1L4P1-201ENST00000319092 1157 ntBASIC5.01□□□□□ -1.61
SOX3P41225 APOA2-201ENST00000367990 474 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SOX3P41225 GLS-203ENST00000409215 632 ntTSL 4 BASIC5.01□□□□□ -1.61
SOX3P41225 AF015720.1-201ENST00000412240 349 ntTSL 3 BASIC5.01□□□□□ -1.61
SOX3P41225 AL512504.1-201ENST00000415494 778 ntBASIC5.01□□□□□ -1.61
SOX3P41225 AC009502.1-203ENST00000416861 496 ntTSL 2 BASIC5.01□□□□□ -1.61
SOX3P41225 DSTNP5-201ENST00000427921 523 ntBASIC5.01□□□□□ -1.61
SOX3P41225 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC5.01□□□□□ -1.61
SOX3P41225 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC5.01□□□□□ -1.61
SOX3P41225 TCEA1P3-201ENST00000443005 880 ntBASIC5.01□□□□□ -1.61
SOX3P41225 AL161629.1-201ENST00000446201 457 ntTSL 3 BASIC5.01□□□□□ -1.61
SOX3P41225 AL672138.1-201ENST00000450604 1015 ntBASIC5.01□□□□□ -1.61
SOX3P41225 OR52E3P-201ENST00000452083 936 ntBASIC5.01□□□□□ -1.61
SOX3P41225 RN7SL188P-201ENST00000469842 285 ntBASIC5.01□□□□□ -1.61
SOX3P41225 AC024558.1-201ENST00000505008 528 ntBASIC5.01□□□□□ -1.61
SOX3P41225 HMGB1P44-201ENST00000508597 572 ntBASIC5.01□□□□□ -1.61
SOX3P41225 LINC00992-202ENST00000514186 564 ntTSL 5 BASIC5.01□□□□□ -1.61
SOX3P41225 RNA5SP34-201ENST00000516887 130 ntBASIC5.01□□□□□ -1.61
SOX3P41225 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC5.01□□□□□ -1.61
SOX3P41225 PIH1D2-208ENST00000532211 1103 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
SOX3P41225 HNF1A-AS1-203ENST00000537361 659 ntTSL 3 BASIC5.01□□□□□ -1.61
SOX3P41225 AC126177.5-201ENST00000549599 178 ntBASIC5.01□□□□□ -1.61
SOX3P41225 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC5.01□□□□□ -1.61
SOX3P41225 NMNAT1P5-201ENST00000559657 841 ntBASIC5.01□□□□□ -1.61
SOX3P41225 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SOX3P41225 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC5.01□□□□□ -1.61
SOX3P41225 AP005209.1-201ENST00000582531 928 ntTSL 5 BASIC5.01□□□□□ -1.61
SOX3P41225 AC068025.2-201ENST00000584958 419 ntTSL 5 BASIC5.01□□□□□ -1.61
SOX3P41225 AL023583.1-201ENST00000607518 1143 ntBASIC5.01□□□□□ -1.61
SOX3P41225 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.01□□□□□ -1.61
SOX3P41225 AL008635.1-201ENST00000609073 385 ntTSL 3 BASIC5.01□□□□□ -1.61
SOX3P41225 LAMTOR5-AS1-227ENST00000609653 457 ntTSL 2 BASIC5.01□□□□□ -1.61
SOX3P41225 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
SOX3P41225 AC020923.1-201ENST00000624021 917 ntBASIC5.01□□□□□ -1.61
SOX3P41225 RUVBL2-214ENST00000640699 153 ntTSL 5 BASIC5.01□□□□□ -1.61
SOX3P41225 BBX-204ENST00000406780 3674 ntAPPRIS P3 TSL 5 BASIC5.01□□□□□ -1.61
SOX3P41225 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.01□□□□□ -1.61
SOX3P41225 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
SOX3P41225 SRSF11-201ENST00000370949 3034 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
SOX3P41225 GRIA2-202ENST00000296526 5621 ntAPPRIS P3 TSL 1 (best) BASIC5.01□□□□□ -1.61
SOX3P41225 TENM1-202ENST00000422452 12891 ntAPPRIS ALT1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SOX3P41225 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
SOX3P41225 MYBPC1-205ENST00000536007 3512 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
SOX3P41225 MYBPC1-206ENST00000541119 3533 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
SOX3P41225 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.01□□□□□ -1.61
SOX3P41225 AL353796.1-201ENST00000561542 3241 ntBASIC5.01□□□□□ -1.61
SOX3P41225 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
SOX3P41225 AC235565.1-201ENST00000456962 1325 ntBASIC5□□□□□ -1.61
SOX3P41225 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC5□□□□□ -1.61
SOX3P41225 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC5□□□□□ -1.61
SOX3P41225 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SOX3P41225 KCNMB2-210ENST00000617329 2214 ntTSL 2 BASIC5□□□□□ -1.61
SOX3P41225 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5□□□□□ -1.61
SOX3P41225 LINC02261-201ENST00000512873 2802 ntTSL 2 BASIC5□□□□□ -1.61
SOX3P41225 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SOX3P41225 STK31-201ENST00000354639 3596 ntTSL 1 (best) BASIC5□□□□□ -1.61
SOX3P41225 RNASE6-201ENST00000304677 1061 ntAPPRIS P1 TSL 1 (best) BASIC5□□□□□ -1.61
SOX3P41225 RNA5SP183-201ENST00000362452 119 ntBASIC5□□□□□ -1.61
SOX3P41225 GEN1-202ENST00000381254 6367 ntAPPRIS P1 TSL 5 BASIC5□□□□□ -1.61
SOX3P41225 RNA5SP339-201ENST00000390987 122 ntBASIC5□□□□□ -1.61
SOX3P41225 NT5C3A-206ENST00000409787 840 ntTSL 2 BASIC5□□□□□ -1.61
SOX3P41225 AC025946.1-201ENST00000413286 430 ntTSL 3 BASIC5□□□□□ -1.61
SOX3P41225 LINC01829-201ENST00000414404 571 ntTSL 2 BASIC5□□□□□ -1.61
SOX3P41225 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC5□□□□□ -1.61
SOX3P41225 AL355870.1-201ENST00000448272 454 ntTSL 3 BASIC5□□□□□ -1.61
SOX3P41225 GAPDHP14-201ENST00000450472 937 ntBASIC5□□□□□ -1.61
SOX3P41225 AC099344.3-201ENST00000454489 626 ntTSL 3 BASIC5□□□□□ -1.61
SOX3P41225 PSAT1P4-201ENST00000466500 526 ntBASIC5□□□□□ -1.61
SOX3P41225 VN1R5-201ENST00000472952 1239 ntAPPRIS P1 BASIC5□□□□□ -1.61
SOX3P41225 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC5□□□□□ -1.61
SOX3P41225 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC5□□□□□ -1.61
SOX3P41225 AC024579.1-201ENST00000503685 371 ntTSL 5 BASIC5□□□□□ -1.61
SOX3P41225 COL6A4P2-205ENST00000509855 506 ntBASIC5□□□□□ -1.61
SOX3P41225 AC109464.1-201ENST00000511091 819 ntBASIC5□□□□□ -1.61
SOX3P41225 AC131953.1-201ENST00000513127 477 ntTSL 2 BASIC5□□□□□ -1.61
SOX3P41225 NPM1P21-201ENST00000513394 762 ntBASIC5□□□□□ -1.61
SOX3P41225 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC5□□□□□ -1.61
SOX3P41225 IGLV2-28-201ENST00000520681 304 ntBASIC5□□□□□ -1.61
SOX3P41225 BAALC-AS1-205ENST00000521102 613 ntTSL 3 BASIC5□□□□□ -1.61
SOX3P41225 AC092709.1-201ENST00000521355 1045 ntBASIC5□□□□□ -1.61
SOX3P41225 HMGB1P40-201ENST00000525121 540 ntBASIC5□□□□□ -1.61
SOX3P41225 AP006259.1-201ENST00000528520 561 ntTSL 2 BASIC5□□□□□ -1.61
SOX3P41225 AL355112.1-201ENST00000550309 1236 ntTSL 1 (best) BASIC5□□□□□ -1.61
SOX3P41225 AL049779.2-201ENST00000553847 315 ntBASIC5□□□□□ -1.61
SOX3P41225 AC004825.1-201ENST00000555068 586 ntBASIC5□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 139.9 ms