Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 USP26-203ENST00000511190 3665 ntAPPRIS P1 TSL 2 BASIC4.93□□□□□ -1.62
COL5A1P20908 MOCS2-203ENST00000450852 1337 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL5A1P20908 R3HDM1-202ENST00000409478 4272 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL5A1P20908 SETDB2-201ENST00000258672 2138 ntTSL 5 BASIC4.93□□□□□ -1.62
COL5A1P20908 ZNF415-201ENST00000243643 2270 ntAPPRIS P3 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL5A1P20908 PCNX4-201ENST00000317623 17339 ntAPPRIS P3 TSL 5 BASIC4.93□□□□□ -1.62
COL5A1P20908 WEE2-201ENST00000397541 3061 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL5A1P20908 SAMD13-202ENST00000370669 856 ntAPPRIS P1 TSL 3 BASIC4.93□□□□□ -1.62
COL5A1P20908 AC002064.2-201ENST00000420245 289 ntTSL 3 BASIC4.93□□□□□ -1.62
COL5A1P20908 SLC9B1P4-201ENST00000421957 1288 ntBASIC4.93□□□□□ -1.62
COL5A1P20908 LINC01934-202ENST00000424170 686 ntTSL 4 BASIC4.93□□□□□ -1.62
COL5A1P20908 TEX41-206ENST00000432608 661 ntTSL 3 BASIC4.93□□□□□ -1.62
COL5A1P20908 AC006967.1-201ENST00000467608 589 ntBASIC4.93□□□□□ -1.62
COL5A1P20908 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC4.93□□□□□ -1.62
COL5A1P20908 FGB-207ENST00000509493 1164 ntTSL 5 BASIC4.93□□□□□ -1.62
COL5A1P20908 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.93□□□□□ -1.62
COL5A1P20908 SNHG1-211ENST00000539921 1071 ntTSL 2 BASIC4.93□□□□□ -1.62
COL5A1P20908 AC007527.1-202ENST00000543347 382 ntTSL 3 BASIC4.93□□□□□ -1.62
COL5A1P20908 PARP1P2-201ENST00000556806 195 ntBASIC4.93□□□□□ -1.62
COL5A1P20908 AC005899.1-201ENST00000584125 563 ntTSL 5 BASIC4.93□□□□□ -1.62
COL5A1P20908 AC105254.2-201ENST00000603636 436 ntBASIC4.93□□□□□ -1.62
COL5A1P20908 GVINP1-201ENST00000526769 8438 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL5A1P20908 DHX40P1-201ENST00000588725 1412 ntBASIC4.93□□□□□ -1.62
COL5A1P20908 POLA1-202ENST00000379068 5486 ntAPPRIS ALT2 TSL 5 BASIC4.93□□□□□ -1.62
COL5A1P20908 DMXL1-215ENST00000539542 11236 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL5A1P20908 AIMP1-202ENST00000394701 2586 ntAPPRIS ALT2 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL5A1P20908 OR6C4-203ENST00000641851 4989 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
COL5A1P20908 RTL9-203ENST00000540313 5225 ntAPPRIS P2 TSL 2 BASIC4.93□□□□□ -1.62
COL5A1P20908 C1orf140-202ENST00000439004 4340 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL5A1P20908 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC4.93□□□□□ -1.62
COL5A1P20908 AC007998.4-201ENST00000612496 2533 ntBASIC4.93□□□□□ -1.62
COL5A1P20908 ZFHX3-207ENST00000641206 16414 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
COL5A1P20908 NHS-205ENST00000617601 8163 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL5A1P20908 DNAJC12-201ENST00000225171 1201 ntAPPRIS P1 TSL 1 (best) BASIC4.93□□□□□ -1.62
COL5A1P20908 TMLHE-202ENST00000369439 1248 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL5A1P20908 RNA5SP332-201ENST00000391063 115 ntBASIC4.93□□□□□ -1.62
COL5A1P20908 LINC02337-201ENST00000401043 374 ntTSL 3 BASIC4.93□□□□□ -1.62
COL5A1P20908 MIR1193-201ENST00000408109 78 ntBASIC4.93□□□□□ -1.62
COL5A1P20908 GPS2P1-201ENST00000411761 986 ntBASIC4.93□□□□□ -1.62
COL5A1P20908 LINC00364-201ENST00000415120 611 ntTSL 3 BASIC4.93□□□□□ -1.62
COL5A1P20908 AC004975.1-201ENST00000428733 208 ntBASIC4.93□□□□□ -1.62
COL5A1P20908 AC068287.1-201ENST00000430283 295 ntBASIC4.93□□□□□ -1.62
COL5A1P20908 KCTD10P1-201ENST00000434203 625 ntBASIC4.93□□□□□ -1.62
COL5A1P20908 AC090018.1-201ENST00000434369 367 ntBASIC4.93□□□□□ -1.62
COL5A1P20908 TXNP2-201ENST00000443918 295 ntBASIC4.93□□□□□ -1.62
COL5A1P20908 RPL36AP15-201ENST00000444514 266 ntBASIC4.93□□□□□ -1.62
COL5A1P20908 AC111000.6-201ENST00000514471 709 ntBASIC4.93□□□□□ -1.62
COL5A1P20908 AC091163.1-201ENST00000524012 605 ntTSL 4 BASIC4.93□□□□□ -1.62
COL5A1P20908 AP006289.1-201ENST00000538089 277 ntBASIC4.93□□□□□ -1.62
COL5A1P20908 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC4.93□□□□□ -1.62
COL5A1P20908 NUFIP2-202ENST00000579665 559 ntTSL 1 (best) BASIC4.93□□□□□ -1.62
COL5A1P20908 SLC8A1-AS1-218ENST00000610721 956 ntTSL 5 BASIC4.93□□□□□ -1.62
COL5A1P20908 AL162574.1-201ENST00000615702 950 ntBASIC4.93□□□□□ -1.62
COL5A1P20908 OR2J1-202ENST00000641659 2144 ntAPPRIS P1 BASIC4.93□□□□□ -1.62
COL5A1P20908 OR52H1-202ENST00000641796 1061 ntBASIC4.93□□□□□ -1.62
COL5A1P20908 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC4.93□□□□□ -1.62
COL5A1P20908 ZNF506-201ENST00000443905 4095 ntAPPRIS P3 TSL 2 BASIC4.92□□□□□ -1.62
COL5A1P20908 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL5A1P20908 LCP2-201ENST00000046794 4678 ntAPPRIS P2 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL5A1P20908 AC015799.1-201ENST00000622996 3122 ntBASIC4.92□□□□□ -1.62
COL5A1P20908 IQCB2P-201ENST00000401788 1633 ntBASIC4.92□□□□□ -1.62
COL5A1P20908 AC087258.1-203ENST00000545400 1629 ntTSL 2 BASIC4.92□□□□□ -1.62
COL5A1P20908 AC079298.1-201ENST00000625026 1619 ntBASIC4.92□□□□□ -1.62
COL5A1P20908 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
COL5A1P20908 BDNF-211ENST00000439476 4532 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL5A1P20908 NKRF-202ENST00000371527 3741 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL5A1P20908 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL5A1P20908 FAM205A-201ENST00000378788 4225 ntAPPRIS P1 TSL 2 BASIC4.92□□□□□ -1.62
COL5A1P20908 PHTF2-207ENST00000424760 1977 ntTSL 2 BASIC4.92□□□□□ -1.62
COL5A1P20908 MEF2C-201ENST00000340208 6192 ntAPPRIS ALT1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL5A1P20908 PHC3-217ENST00000497658 2087 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL5A1P20908 FPGT-208ENST00000534056 1426 ntTSL 2 BASIC4.92□□□□□ -1.62
COL5A1P20908 BTLA-201ENST00000334529 3213 ntAPPRIS P3 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL5A1P20908 OR1L8-201ENST00000304865 1061 ntAPPRIS P1 BASIC4.92□□□□□ -1.62
COL5A1P20908 RPS3AP23-201ENST00000401762 784 ntBASIC4.92□□□□□ -1.62
COL5A1P20908 IL6-206ENST00000407492 926 ntTSL 3 BASIC4.92□□□□□ -1.62
COL5A1P20908 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC4.92□□□□□ -1.62
COL5A1P20908 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC4.92□□□□□ -1.62
COL5A1P20908 RPL7AP61-201ENST00000443410 636 ntBASIC4.92□□□□□ -1.62
COL5A1P20908 AC074327.1-202ENST00000443523 369 ntTSL 2 BASIC4.92□□□□□ -1.62
COL5A1P20908 NOP56P2-201ENST00000447491 769 ntBASIC4.92□□□□□ -1.62
COL5A1P20908 OR52J1P-201ENST00000450596 932 ntBASIC4.92□□□□□ -1.62
COL5A1P20908 AC073429.1-201ENST00000511749 503 ntTSL 3 BASIC4.92□□□□□ -1.62
COL5A1P20908 AC018680.1-201ENST00000513332 875 ntTSL 3 BASIC4.92□□□□□ -1.62
COL5A1P20908 NSMCE2-206ENST00000519010 848 ntTSL 2 BASIC4.92□□□□□ -1.62
COL5A1P20908 AC022915.1-201ENST00000521660 289 ntTSL 3 BASIC4.92□□□□□ -1.62
COL5A1P20908 AP002370.2-203ENST00000533101 576 ntTSL 4 BASIC4.92□□□□□ -1.62
COL5A1P20908 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC4.92□□□□□ -1.62
COL5A1P20908 uc_338.7-201ENST00000621834 124 ntBASIC4.92□□□□□ -1.62
COL5A1P20908 CFAP61-201ENST00000245957 4082 ntAPPRIS P2 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL5A1P20908 AC006210.2-201ENST00000367074 1545 ntBASIC4.92□□□□□ -1.62
COL5A1P20908 ALCAM-205ENST00000472644 4189 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL5A1P20908 ESCO1-201ENST00000269214 4523 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL5A1P20908 PUM2-201ENST00000319801 6002 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL5A1P20908 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL5A1P20908 AC092828.1-201ENST00000501211 5391 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL5A1P20908 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC4.92□□□□□ -1.62
COL5A1P20908 HCG18-237ENST00000444126 4605 ntTSL 5 BASIC4.92□□□□□ -1.62
COL5A1P20908 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC4.92□□□□□ -1.62
COL5A1P20908 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC4.91□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 119.2 ms