Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.36□□□□□ -1.55
MSH3P20585 VPS50-202ENST00000305866 3613 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSH3P20585 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.36□□□□□ -1.55
MSH3P20585 USP8-201ENST00000307179 4243 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSH3P20585 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.36□□□□□ -1.55
MSH3P20585 DOCK9-207ENST00000442173 7643 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
MSH3P20585 PRG4-206ENST00000635041 4915 ntAPPRIS ALT2 TSL 5 BASIC5.35□□□□□ -1.55
MSH3P20585 LCLAT1-203ENST00000379509 4888 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
MSH3P20585 ZNF616-204ENST00000600228 4335 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
MSH3P20585 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC5.35□□□□□ -1.55
MSH3P20585 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
MSH3P20585 RNF32-203ENST00000392741 2260 ntTSL 1 (best) BASIC5.35□□□□□ -1.55
MSH3P20585 Z94721.2-201ENST00000609590 5310 ntTSL 2 BASIC5.35□□□□□ -1.55
MSH3P20585 ENPP2-207ENST00000522167 1695 ntTSL 2 BASIC5.35□□□□□ -1.55
MSH3P20585 MIR133B-201ENST00000362210 119 ntBASIC5.35□□□□□ -1.55
MSH3P20585 RNU6-386P-201ENST00000362650 107 ntBASIC5.35□□□□□ -1.55
MSH3P20585 RNA5SP335-201ENST00000363817 110 ntBASIC5.35□□□□□ -1.55
MSH3P20585 OR6K3-202ENST00000368146 996 ntBASIC5.35□□□□□ -1.55
MSH3P20585 HSPA8P15-201ENST00000401676 786 ntBASIC5.35□□□□□ -1.55
MSH3P20585 RNU2-72P-201ENST00000411175 163 ntBASIC5.35□□□□□ -1.55
MSH3P20585 MTND4LP21-201ENST00000415303 295 ntBASIC5.35□□□□□ -1.55
MSH3P20585 G6PC2-203ENST00000421979 494 ntTSL 3 BASIC5.35□□□□□ -1.55
MSH3P20585 FTLP19-201ENST00000433300 394 ntBASIC5.35□□□□□ -1.55
MSH3P20585 CYCSP12-201ENST00000437729 300 ntBASIC5.35□□□□□ -1.55
MSH3P20585 AC016772.1-201ENST00000444170 1261 ntBASIC5.35□□□□□ -1.55
MSH3P20585 AC020559.1-201ENST00000444229 583 ntTSL 2 BASIC5.35□□□□□ -1.55
MSH3P20585 AC093581.1-201ENST00000446411 461 ntTSL 2 BASIC5.35□□□□□ -1.55
MSH3P20585 LINC02541-202ENST00000452675 465 ntTSL 5 BASIC5.35□□□□□ -1.55
MSH3P20585 AC068489.1-201ENST00000453706 261 ntTSL 5 BASIC5.35□□□□□ -1.55
MSH3P20585 AC011405.1-202ENST00000504658 803 ntTSL 3 BASIC5.35□□□□□ -1.55
MSH3P20585 AC021193.1-201ENST00000511607 420 ntBASIC5.35□□□□□ -1.55
MSH3P20585 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC5.35□□□□□ -1.55
MSH3P20585 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC5.35□□□□□ -1.55
MSH3P20585 NSMCE2-210ENST00000522563 1037 ntAPPRIS P1 TSL 5 BASIC5.35□□□□□ -1.55
MSH3P20585 AC025370.1-201ENST00000523775 583 ntTSL 5 BASIC5.35□□□□□ -1.55
MSH3P20585 HMGB1P40-201ENST00000525121 540 ntBASIC5.35□□□□□ -1.55
MSH3P20585 BMPR1APS2-201ENST00000527904 1012 ntBASIC5.35□□□□□ -1.55
MSH3P20585 AP004607.2-201ENST00000533949 322 ntBASIC5.35□□□□□ -1.55
MSH3P20585 DEFB109F-202ENST00000542600 509 ntTSL 2 BASIC5.35□□□□□ -1.55
MSH3P20585 AC007406.1-201ENST00000544067 315 ntTSL 3 BASIC5.35□□□□□ -1.55
MSH3P20585 SMARCE1P3-201ENST00000553649 1231 ntBASIC5.35□□□□□ -1.55
MSH3P20585 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.35□□□□□ -1.55
MSH3P20585 AC009852.2-201ENST00000567898 485 ntBASIC5.35□□□□□ -1.55
MSH3P20585 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.35□□□□□ -1.55
MSH3P20585 AC093484.5-201ENST00000585048 304 ntTSL 3 BASIC5.35□□□□□ -1.55
MSH3P20585 TTN-AS1-219ENST00000586707 834 ntTSL 5 BASIC5.35□□□□□ -1.55
MSH3P20585 MIR6862-1-201ENST00000613016 70 ntBASIC5.35□□□□□ -1.55
MSH3P20585 MIR6862-2-201ENST00000614755 70 ntBASIC5.35□□□□□ -1.55
MSH3P20585 AC009032.1-201ENST00000617574 431 ntBASIC5.35□□□□□ -1.55
MSH3P20585 AC138965.3-201ENST00000623875 498 ntBASIC5.35□□□□□ -1.55
MSH3P20585 AC080188.3-201ENST00000624842 748 ntBASIC5.35□□□□□ -1.55
MSH3P20585 AC074101.1-201ENST00000637861 241 ntBASIC5.35□□□□□ -1.55
MSH3P20585 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC5.35□□□□□ -1.55
MSH3P20585 SMNDC1-202ENST00000369603 4341 ntAPPRIS P1 TSL 1 (best) BASIC5.35□□□□□ -1.55
MSH3P20585 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
MSH3P20585 AC100757.1-201ENST00000616872 1835 ntBASIC5.34□□□□□ -1.55
MSH3P20585 TOPBP1-201ENST00000260810 5378 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
MSH3P20585 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
MSH3P20585 CYP4Z2P-201ENST00000423332 1512 ntBASIC5.34□□□□□ -1.55
MSH3P20585 CEP290-202ENST00000397838 2421 ntTSL 5 BASIC5.34□□□□□ -1.55
MSH3P20585 EEF1A1P14-201ENST00000421195 1376 ntBASIC5.34□□□□□ -1.55
MSH3P20585 MTND4P21-201ENST00000453886 1357 ntBASIC5.34□□□□□ -1.55
MSH3P20585 GPR1-201ENST00000407325 2295 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
MSH3P20585 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
MSH3P20585 SLITRK4-202ENST00000356928 3074 ntAPPRIS P1 TSL 2 BASIC5.34□□□□□ -1.55
MSH3P20585 SPRR2G-201ENST00000368748 568 ntAPPRIS P1 TSL 1 (best) BASIC5.34□□□□□ -1.55
MSH3P20585 MYO3A-202ENST00000376301 727 ntTSL 5 BASIC5.34□□□□□ -1.55
MSH3P20585 MIR7-1-201ENST00000384871 110 ntBASIC5.34□□□□□ -1.55
MSH3P20585 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC5.34□□□□□ -1.55
MSH3P20585 AC013470.3-201ENST00000420252 1194 ntBASIC5.34□□□□□ -1.55
MSH3P20585 AC079355.1-201ENST00000421770 223 ntBASIC5.34□□□□□ -1.55
MSH3P20585 CR848007.2-201ENST00000424918 787 ntBASIC5.34□□□□□ -1.55
MSH3P20585 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.34□□□□□ -1.55
MSH3P20585 DSTNP5-201ENST00000427921 523 ntBASIC5.34□□□□□ -1.55
MSH3P20585 AL354863.1-204ENST00000436430 556 ntTSL 3 BASIC5.34□□□□□ -1.55
MSH3P20585 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.34□□□□□ -1.55
MSH3P20585 Z99916.1-201ENST00000454253 482 ntTSL 3 BASIC5.34□□□□□ -1.55
MSH3P20585 OR2AO1P-201ENST00000476497 403 ntBASIC5.34□□□□□ -1.55
MSH3P20585 AC098976.1-201ENST00000513014 541 ntBASIC5.34□□□□□ -1.55
MSH3P20585 ATP5LP3-201ENST00000514223 304 ntBASIC5.34□□□□□ -1.55
MSH3P20585 LINC00535-202ENST00000517785 264 ntTSL 3 BASIC5.34□□□□□ -1.55
MSH3P20585 AC138832.1-201ENST00000522871 556 ntBASIC5.34□□□□□ -1.55
MSH3P20585 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC5.34□□□□□ -1.55
MSH3P20585 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.34□□□□□ -1.55
MSH3P20585 OR8G3P-201ENST00000533406 921 ntBASIC5.34□□□□□ -1.55
MSH3P20585 NELL2-211ENST00000548826 559 ntTSL 2 BASIC5.34□□□□□ -1.55
MSH3P20585 AC107032.2-201ENST00000551082 386 ntTSL 3 BASIC5.34□□□□□ -1.55
MSH3P20585 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.34□□□□□ -1.55
MSH3P20585 AC066613.1-201ENST00000559977 1053 ntTSL 2 BASIC5.34□□□□□ -1.55
MSH3P20585 LINC01243-201ENST00000562065 721 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
MSH3P20585 AC055855.2-201ENST00000565993 500 ntTSL 2 BASIC5.34□□□□□ -1.55
MSH3P20585 C16orf52-205ENST00000567004 951 ntTSL 1 (best) BASIC5.34□□□□□ -1.55
MSH3P20585 AC007342.5-201ENST00000571340 2142 ntBASIC5.34□□□□□ -1.55
MSH3P20585 RBM22P1-201ENST00000578589 1214 ntBASIC5.34□□□□□ -1.55
MSH3P20585 RN7SL356P-201ENST00000582228 248 ntBASIC5.34□□□□□ -1.55
MSH3P20585 LINC00663-202ENST00000586816 306 ntTSL 2 BASIC5.34□□□□□ -1.55
MSH3P20585 AC009027.1-201ENST00000604510 479 ntBASIC5.34□□□□□ -1.55
MSH3P20585 LAMTOR5-AS1-217ENST00000608152 407 ntTSL 5 BASIC5.34□□□□□ -1.55
MSH3P20585 OR51C1P-201ENST00000608504 942 ntBASIC5.34□□□□□ -1.55
MSH3P20585 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC5.34□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 106.5 ms