Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 UBE2V2P3-201ENST00000433562 437 ntBASIC4.91□□□□□ -1.62
SDC1P18827 PARGP1-202ENST00000440803 790 ntTSL 2 BASIC4.91□□□□□ -1.62
SDC1P18827 AL161722.1-201ENST00000446972 1032 ntBASIC4.91□□□□□ -1.62
SDC1P18827 AP001439.1-201ENST00000455275 392 ntTSL 2 BASIC4.91□□□□□ -1.62
SDC1P18827 AL589703.1-201ENST00000456032 256 ntTSL 5 BASIC4.91□□□□□ -1.62
SDC1P18827 RN7SL184P-201ENST00000488308 297 ntBASIC4.91□□□□□ -1.62
SDC1P18827 AC015864.1-201ENST00000496512 544 ntBASIC4.91□□□□□ -1.62
SDC1P18827 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC4.91□□□□□ -1.62
SDC1P18827 MTATP6P1-201ENST00000514057 681 ntBASIC4.91□□□□□ -1.62
SDC1P18827 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC4.91□□□□□ -1.62
SDC1P18827 AC012613.1-201ENST00000522685 387 ntTSL 2 BASIC4.91□□□□□ -1.62
SDC1P18827 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC4.91□□□□□ -1.62
SDC1P18827 RERGL-202ENST00000536890 367 ntTSL 3 BASIC4.91□□□□□ -1.62
SDC1P18827 AC144548.2-201ENST00000550231 946 ntTSL 3 BASIC4.91□□□□□ -1.62
SDC1P18827 AC074031.1-201ENST00000550634 734 ntTSL 3 BASIC4.91□□□□□ -1.62
SDC1P18827 EIF1AXP2-201ENST00000555940 413 ntBASIC4.91□□□□□ -1.62
SDC1P18827 ULK4P1-201ENST00000564495 875 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SDC1P18827 ULK4P2-204ENST00000569682 798 ntTSL 1 (best) BASIC4.91□□□□□ -1.62
SDC1P18827 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC4.91□□□□□ -1.62
SDC1P18827 AL136311.1-213ENST00000586466 520 ntTSL 5 BASIC4.91□□□□□ -1.62
SDC1P18827 AC069307.1-201ENST00000602820 447 ntBASIC4.91□□□□□ -1.62
SDC1P18827 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC4.91□□□□□ -1.62
SDC1P18827 AC135068.12-201ENST00000637370 931 ntBASIC4.91□□□□□ -1.62
SDC1P18827 NUP107-202ENST00000378905 2859 ntTSL 5 BASIC4.91□□□□□ -1.62
SDC1P18827 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SDC1P18827 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.91□□□□□ -1.62
SDC1P18827 AC235565.1-201ENST00000456962 1325 ntBASIC4.91□□□□□ -1.62
SDC1P18827 SAMD12-202ENST00000409003 8866 ntAPPRIS P1 TSL 5 BASIC4.91□□□□□ -1.62
SDC1P18827 AL138820.1-201ENST00000617901 5305 ntBASIC4.91□□□□□ -1.62
SDC1P18827 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC4.91□□□□□ -1.62
SDC1P18827 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.91□□□□□ -1.62
SDC1P18827 ZNF845-201ENST00000458035 4311 ntAPPRIS P1 TSL 4 BASIC4.91□□□□□ -1.62
SDC1P18827 RMDN2-202ENST00000354545 1381 ntAPPRIS P1 TSL 1 (best) BASIC4.91□□□□□ -1.62
SDC1P18827 CASC19-221ENST00000641309 1382 ntBASIC4.91□□□□□ -1.62
SDC1P18827 PPEF1-201ENST00000349874 2687 ntTSL 5 BASIC4.9□□□□□ -1.62
SDC1P18827 ZNF704-201ENST00000327835 14386 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.62
SDC1P18827 AC003985.2-201ENST00000562268 1669 ntBASIC4.9□□□□□ -1.62
SDC1P18827 OFD1P9Y-201ENST00000417699 1491 ntBASIC4.9□□□□□ -1.62
SDC1P18827 AC105411.1-201ENST00000568776 1470 ntTSL 4 BASIC4.9□□□□□ -1.62
SDC1P18827 ITCH-201ENST00000262650 3089 ntTSL 1 (best) BASIC4.9□□□□□ -1.62
SDC1P18827 LAMTOR3-201ENST00000226522 1220 ntTSL 3 BASIC4.9□□□□□ -1.63
SDC1P18827 ANAPC10-201ENST00000309439 868 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SDC1P18827 AC017079.1-201ENST00000333650 415 ntBASIC4.9□□□□□ -1.63
SDC1P18827 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
SDC1P18827 EI24P3-201ENST00000399046 1062 ntBASIC4.9□□□□□ -1.63
SDC1P18827 AC009804.1-201ENST00000400949 179 ntBASIC4.9□□□□□ -1.63
SDC1P18827 ZSCAN12P1-201ENST00000406489 419 ntBASIC4.9□□□□□ -1.63
SDC1P18827 RNA5SP178-201ENST00000410380 128 ntBASIC4.9□□□□□ -1.63
SDC1P18827 CBX1P3-201ENST00000413296 527 ntBASIC4.9□□□□□ -1.63
SDC1P18827 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC4.9□□□□□ -1.63
SDC1P18827 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC4.9□□□□□ -1.63
SDC1P18827 AL139148.1-201ENST00000427122 680 ntBASIC4.9□□□□□ -1.63
SDC1P18827 RPS4XP16-201ENST00000427198 791 ntBASIC4.9□□□□□ -1.63
SDC1P18827 AC104843.2-201ENST00000427666 297 ntBASIC4.9□□□□□ -1.63
SDC1P18827 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC4.9□□□□□ -1.63
SDC1P18827 AC016395.1-201ENST00000444086 465 ntTSL 3 BASIC4.9□□□□□ -1.63
SDC1P18827 AC092637.1-201ENST00000444745 510 ntTSL 5 BASIC4.9□□□□□ -1.63
SDC1P18827 OR6C72P-201ENST00000451403 892 ntBASIC4.9□□□□□ -1.63
SDC1P18827 AC007386.1-201ENST00000455212 582 ntBASIC4.9□□□□□ -1.63
SDC1P18827 Z92846.1-201ENST00000456203 268 ntBASIC4.9□□□□□ -1.63
SDC1P18827 AC023141.9-201ENST00000458734 412 ntBASIC4.9□□□□□ -1.63
SDC1P18827 RPS4XP12-201ENST00000461747 709 ntBASIC4.9□□□□□ -1.63
SDC1P18827 AC016687.1-201ENST00000482574 353 ntBASIC4.9□□□□□ -1.63
SDC1P18827 AC091860.2-201ENST00000509423 941 ntTSL 2 BASIC4.9□□□□□ -1.63
SDC1P18827 LINC02505-202ENST00000510597 776 ntTSL 3 BASIC4.9□□□□□ -1.63
SDC1P18827 AC020551.1-201ENST00000512036 539 ntTSL 3 BASIC4.9□□□□□ -1.63
SDC1P18827 LINC02278-201ENST00000512170 500 ntTSL 5 BASIC4.9□□□□□ -1.63
SDC1P18827 AC069272.1-201ENST00000514843 680 ntTSL 3 BASIC4.9□□□□□ -1.63
SDC1P18827 AP006245.2-201ENST00000522004 300 ntBASIC4.9□□□□□ -1.63
SDC1P18827 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC4.9□□□□□ -1.63
SDC1P18827 LINC02400-201ENST00000548210 351 ntTSL 2 BASIC4.9□□□□□ -1.63
SDC1P18827 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
SDC1P18827 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC4.9□□□□□ -1.63
SDC1P18827 AC127381.1-201ENST00000555979 939 ntBASIC4.9□□□□□ -1.63
SDC1P18827 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.63
SDC1P18827 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC4.9□□□□□ -1.63
SDC1P18827 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC4.9□□□□□ -1.63
SDC1P18827 AC129507.1-204ENST00000573601 503 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SDC1P18827 AC011840.5-201ENST00000582125 771 ntBASIC4.9□□□□□ -1.63
SDC1P18827 MYLK-221ENST00000583087 678 ntTSL 4 BASIC4.9□□□□□ -1.63
SDC1P18827 AC022031.2-203ENST00000587346 565 ntTSL 4 BASIC4.9□□□□□ -1.63
SDC1P18827 AL589674.2-201ENST00000604304 337 ntBASIC4.9□□□□□ -1.63
SDC1P18827 OR4F17-202ENST00000585993 2669 ntAPPRIS P1 BASIC4.9□□□□□ -1.63
SDC1P18827 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC4.9□□□□□ -1.63
SDC1P18827 CYP4Z2P-201ENST00000423332 1512 ntBASIC4.9□□□□□ -1.63
SDC1P18827 RAP1GDS1-206ENST00000453712 2470 ntAPPRIS ALT1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SDC1P18827 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC4.9□□□□□ -1.63
SDC1P18827 FZD6-205ENST00000522566 3719 ntAPPRIS P1 TSL 1 (best) BASIC4.9□□□□□ -1.63
SDC1P18827 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SDC1P18827 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC4.9□□□□□ -1.63
SDC1P18827 PIK3C3-217ENST00000639914 2722 ntTSL 5 BASIC4.89□□□□□ -1.63
SDC1P18827 SLC1A3-216ENST00000613445 4030 ntTSL 5 BASIC4.89□□□□□ -1.63
SDC1P18827 AC093849.1-201ENST00000563631 2209 ntBASIC4.89□□□□□ -1.63
SDC1P18827 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC4.89□□□□□ -1.63
SDC1P18827 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC4.89□□□□□ -1.63
SDC1P18827 CCNT1-205ENST00000618666 6915 ntTSL 2 BASIC4.89□□□□□ -1.63
SDC1P18827 SNORA67-201ENST00000384423 137 ntBASIC4.89□□□□□ -1.63
SDC1P18827 SNORA17A-201ENST00000391185 133 ntBASIC4.89□□□□□ -1.63
SDC1P18827 AC007068.1-201ENST00000396690 844 ntBASIC4.89□□□□□ -1.63
SDC1P18827 NUDT19P3-201ENST00000404698 555 ntBASIC4.89□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 107.5 ms