Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 AC008575.1-201ENST00000520401 694 ntAPPRIS P1 TSL 3 BASIC4.96□□□□□ -1.62
HOXD4P09016 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC4.96□□□□□ -1.62
HOXD4P09016 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC4.96□□□□□ -1.62
HOXD4P09016 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC4.96□□□□□ -1.62
HOXD4P09016 AC091544.7-201ENST00000554000 240 ntTSL 3 BASIC4.96□□□□□ -1.62
HOXD4P09016 AC106730.2-201ENST00000566641 540 ntBASIC4.96□□□□□ -1.62
HOXD4P09016 AC010547.7-201ENST00000570323 333 ntBASIC4.96□□□□□ -1.62
HOXD4P09016 AL157938.2-209ENST00000589128 792 ntTSL 2 BASIC4.96□□□□□ -1.62
HOXD4P09016 RFC1-217ENST00000639695 867 ntTSL 5 BASIC4.96□□□□□ -1.62
HOXD4P09016 AC083843.3-201ENST00000623679 2186 ntBASIC4.96□□□□□ -1.62
HOXD4P09016 PEAK1-201ENST00000312493 11512 ntAPPRIS P1 TSL 5 BASIC4.96□□□□□ -1.62
HOXD4P09016 ZBTB38-202ENST00000441582 3662 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
HOXD4P09016 KYAT3-203ENST00000370491 1868 ntAPPRIS ALT1 TSL 2 BASIC4.96□□□□□ -1.62
HOXD4P09016 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC4.96□□□□□ -1.62
HOXD4P09016 ZNF284-201ENST00000421176 4351 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
HOXD4P09016 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC4.96□□□□□ -1.62
HOXD4P09016 DYNC1I2-201ENST00000340296 2589 ntAPPRIS P4 TSL 1 (best) BASIC4.96□□□□□ -1.62
HOXD4P09016 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC4.96□□□□□ -1.62
HOXD4P09016 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC4.96□□□□□ -1.62
HOXD4P09016 ELAVL4-205ENST00000371824 3966 ntAPPRIS P5 TSL 1 (best) BASIC4.96□□□□□ -1.62
HOXD4P09016 ZNF347-201ENST00000334197 7960 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
HOXD4P09016 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
HOXD4P09016 ZFPM2-203ENST00000517361 3300 ntTSL 2 BASIC4.95□□□□□ -1.62
HOXD4P09016 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC4.95□□□□□ -1.62
HOXD4P09016 TTBK2-201ENST00000267890 10905 ntAPPRIS P2 TSL 5 BASIC4.95□□□□□ -1.62
HOXD4P09016 TANK-205ENST00000405852 2155 ntTSL 5 BASIC4.95□□□□□ -1.62
HOXD4P09016 CLVS1-201ENST00000325897 3486 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
HOXD4P09016 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
HOXD4P09016 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
HOXD4P09016 KRT222-202ENST00000394052 1712 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
HOXD4P09016 RYR3-209ENST00000634418 15078 ntAPPRIS ALT2 TSL 5 BASIC4.95□□□□□ -1.62
HOXD4P09016 DDX18P6-201ENST00000450119 1997 ntBASIC4.95□□□□□ -1.62
HOXD4P09016 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC4.95□□□□□ -1.62
HOXD4P09016 ANXA1-202ENST00000376911 2209 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
HOXD4P09016 EAF2-201ENST00000273668 992 ntAPPRIS P1 TSL 1 (best) BASIC4.95□□□□□ -1.62
HOXD4P09016 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
HOXD4P09016 RNU1-136P-201ENST00000384181 164 ntBASIC4.95□□□□□ -1.62
HOXD4P09016 RNA5SP91-201ENST00000390902 119 ntBASIC4.95□□□□□ -1.62
HOXD4P09016 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
HOXD4P09016 CABYR-204ENST00000399499 1272 ntAPPRIS ALT2 TSL 1 (best) BASIC4.95□□□□□ -1.62
HOXD4P09016 MTND4LP21-201ENST00000415303 295 ntBASIC4.95□□□□□ -1.62
HOXD4P09016 AC010967.1-201ENST00000421575 489 ntTSL 5 BASIC4.95□□□□□ -1.62
HOXD4P09016 AC093655.2-201ENST00000425735 631 ntBASIC4.95□□□□□ -1.62
HOXD4P09016 RPL34P6-201ENST00000432390 345 ntBASIC4.95□□□□□ -1.62
HOXD4P09016 TMEM244-202ENST00000438392 565 ntAPPRIS P1 TSL 5 BASIC4.95□□□□□ -1.62
HOXD4P09016 RPL12P3-201ENST00000440080 396 ntBASIC4.95□□□□□ -1.62
HOXD4P09016 CEACAMP7-201ENST00000444105 496 ntBASIC4.95□□□□□ -1.62
HOXD4P09016 AP000472.1-201ENST00000452500 530 ntTSL 2 BASIC4.95□□□□□ -1.62
HOXD4P09016 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC4.95□□□□□ -1.62
HOXD4P09016 RPSAP50-201ENST00000481955 852 ntBASIC4.95□□□□□ -1.62
HOXD4P09016 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC4.95□□□□□ -1.62
HOXD4P09016 ACTR6P1-201ENST00000514311 1104 ntBASIC4.95□□□□□ -1.62
HOXD4P09016 RNU6-943P-201ENST00000516960 98 ntBASIC4.95□□□□□ -1.62
HOXD4P09016 CDH12P4-201ENST00000517835 295 ntBASIC4.95□□□□□ -1.62
HOXD4P09016 CDH12P3-201ENST00000517935 295 ntBASIC4.95□□□□□ -1.62
HOXD4P09016 CDH12P1-201ENST00000518435 295 ntBASIC4.95□□□□□ -1.62
HOXD4P09016 KCTD9P6-201ENST00000522306 950 ntBASIC4.95□□□□□ -1.62
HOXD4P09016 OR10D4P-201ENST00000525892 951 ntBASIC4.95□□□□□ -1.62
HOXD4P09016 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC4.95□□□□□ -1.62
HOXD4P09016 AC022832.1-201ENST00000530718 645 ntBASIC4.95□□□□□ -1.62
HOXD4P09016 AP006295.1-201ENST00000532605 585 ntTSL 5 BASIC4.95□□□□□ -1.62
HOXD4P09016 AP001266.2-201ENST00000534505 464 ntTSL 4 BASIC4.95□□□□□ -1.62
HOXD4P09016 MRE11-209ENST00000540013 1212 ntTSL 1 (best) BASIC4.95□□□□□ -1.62
HOXD4P09016 AC139697.1-201ENST00000548429 745 ntBASIC4.95□□□□□ -1.62
HOXD4P09016 GPATCH2L-203ENST00000553588 776 ntTSL 2 BASIC4.95□□□□□ -1.62
HOXD4P09016 AC104365.3-201ENST00000587011 625 ntTSL 5 BASIC4.95□□□□□ -1.62
HOXD4P09016 AP000873.2-201ENST00000602381 406 ntTSL 2 BASIC4.95□□□□□ -1.62
HOXD4P09016 AL021368.1-201ENST00000607490 540 ntBASIC4.95□□□□□ -1.62
HOXD4P09016 AC096586.2-201ENST00000610260 441 ntBASIC4.95□□□□□ -1.62
HOXD4P09016 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC4.95□□□□□ -1.62
HOXD4P09016 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC4.95□□□□□ -1.62
HOXD4P09016 SAMMSON-213ENST00000641336 1521 ntBASIC4.95□□□□□ -1.62
HOXD4P09016 TNRC6B-201ENST00000301923 15958 ntAPPRIS P3 TSL 5 BASIC4.95□□□□□ -1.62
HOXD4P09016 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC4.95□□□□□ -1.62
HOXD4P09016 OR2L13-202ENST00000641714 1948 ntAPPRIS P1 BASIC4.95□□□□□ -1.62
HOXD4P09016 AC006145.1-201ENST00000439234 2651 ntTSL 2 BASIC4.95□□□□□ -1.62
HOXD4P09016 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC4.95□□□□□ -1.62
HOXD4P09016 SEC31A-204ENST00000355196 4104 ntAPPRIS P4 TSL 2 BASIC4.95□□□□□ -1.62
HOXD4P09016 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC4.95□□□□□ -1.62
HOXD4P09016 MYO5A-201ENST00000356338 11971 ntAPPRIS ALT1 TSL 1 (best) BASIC4.94□□□□□ -1.62
HOXD4P09016 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HOXD4P09016 HYDIN-201ENST00000288168 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
HOXD4P09016 CFAP47-202ENST00000313548 1549 ntAPPRIS ALT2 TSL 1 (best) BASIC4.94□□□□□ -1.62
HOXD4P09016 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC4.94□□□□□ -1.62
HOXD4P09016 CRYAB-201ENST00000227251 848 ntAPPRIS P1 TSL 5 BASIC4.94□□□□□ -1.62
HOXD4P09016 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC4.94□□□□□ -1.62
HOXD4P09016 SNORA70.6-201ENST00000383934 134 ntBASIC4.94□□□□□ -1.62
HOXD4P09016 MIR765-201ENST00000390226 114 ntBASIC4.94□□□□□ -1.62
HOXD4P09016 AC007068.1-201ENST00000396690 844 ntBASIC4.94□□□□□ -1.62
HOXD4P09016 MTND3P20-201ENST00000407663 186 ntBASIC4.94□□□□□ -1.62
HOXD4P09016 AL390774.1-201ENST00000411924 246 ntBASIC4.94□□□□□ -1.62
HOXD4P09016 HMGB1P32-201ENST00000425971 565 ntBASIC4.94□□□□□ -1.62
HOXD4P09016 CYCSP6-201ENST00000434498 302 ntBASIC4.94□□□□□ -1.62
HOXD4P09016 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC4.94□□□□□ -1.62
HOXD4P09016 AURKAPS1-201ENST00000451805 1212 ntBASIC4.94□□□□□ -1.62
HOXD4P09016 LINC01456-201ENST00000453902 708 ntTSL 3 BASIC4.94□□□□□ -1.62
HOXD4P09016 CDKN3-205ENST00000458126 845 ntAPPRIS ALT2 TSL 5 BASIC4.94□□□□□ -1.62
HOXD4P09016 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC4.94□□□□□ -1.62
HOXD4P09016 CBX1P5-201ENST00000475330 559 ntBASIC4.94□□□□□ -1.62
HOXD4P09016 RPL7AP6-201ENST00000477943 801 ntBASIC4.94□□□□□ -1.62
Retrieved 100 of 98,524 protein–RNA pairs in 76 ms