Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 AC091167.1-201ENST00000492017 396 ntBASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 RNU2-30P-201ENST00000516209 141 ntBASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 AP001804.1-201ENST00000526868 919 ntBASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 NAV2-AS3-201ENST00000534036 598 ntTSL 3 BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 AL162872.1-201ENST00000557709 448 ntTSL 3 BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 AC053481.3-201ENST00000577881 843 ntBASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 AC105402.3-203ENST00000608822 885 ntTSL 5 BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 SCN8A-201ENST00000354534 11556 ntAPPRIS P3 TSL 1 (best) BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 APOOL-203ENST00000622540 6466 ntTSL 5 BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 NOX4-211ENST00000528341 1899 ntTSL 2 BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 ALS2-201ENST00000264276 6644 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 LINC00649-203ENST00000427447 9124 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 STARD4-AS1-201ENST00000500779 5525 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 AC021074.3-201ENST00000476385 1825 ntTSL 2 BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 ZCCHC6-204ENST00000375957 2262 ntTSL 2 BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 ZC3H11A-201ENST00000332127 5015 ntAPPRIS P1 TSL 1 (best) BASIC6.52□□□□□ -1.37
SHANK3Q9BYB0 AC133552.1-201ENST00000569988 4007 ntBASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 REV3L-203ENST00000368805 10461 ntAPPRIS P1 TSL 5 BASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 ADAMTS9-201ENST00000295903 7060 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 ATF2-201ENST00000264110 4176 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 TMLHE-AS1-201ENST00000433624 1702 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 RNA5SP387-201ENST00000364226 106 ntBASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 MAST4-207ENST00000407621 559 ntTSL 2 BASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 C6orf52-203ENST00000426700 493 ntAPPRIS P2 TSL 2 BASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 CASP12-204ENST00000433738 709 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 AC099670.2-201ENST00000435130 321 ntBASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 NDUFB4P8-201ENST00000435351 367 ntBASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 TXNP2-201ENST00000443918 295 ntBASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 RN7SKP248-201ENST00000516278 305 ntBASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 OR4A2P-201ENST00000527276 913 ntBASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 TTN-AS1-237ENST00000590743 812 ntTSL 5 BASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 AL022401.1-201ENST00000619498 108 ntBASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 AC034229.5-201ENST00000624258 185 ntBASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 LINC01232-203ENST00000625369 576 ntTSL 4 BASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 AC009234.1-201ENST00000634985 895 ntTSL 5 BASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 SIPA1L1-202ENST00000381232 5944 ntAPPRIS ALT1 TSL 1 (best) BASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 TXNRD1-205ENST00000503506 3930 ntAPPRIS P2 TSL 1 (best) BASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 CHCHD7-203ENST00000396723 1550 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 KIAA1328-202ENST00000586135 1863 ntTSL 1 (best) BASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 NBEA-207ENST00000537702 4089 ntTSL 2 BASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 ZNF594-201ENST00000399604 4862 ntAPPRIS P1 BASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 ZNF682-207ENST00000595736 1710 ntTSL 2 BASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 UG0898H09-202ENST00000623646 7040 ntBASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC6.51□□□□□ -1.37
SHANK3Q9BYB0 RNU1-64P-201ENST00000365443 163 ntBASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 AL645608.4-201ENST00000423619 154 ntBASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 AP001324.1-201ENST00000428553 399 ntBASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 AC062021.1-201ENST00000429008 557 ntTSL 4 BASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 AP000619.2-201ENST00000546014 969 ntBASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 LINC02306-201ENST00000546412 529 ntTSL 3 BASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 OR7A5-202ENST00000594432 1029 ntAPPRIS P1 BASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 AC005618.4-201ENST00000625053 554 ntBASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 PDGFRA-206ENST00000508170 2202 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 AC139713.2-214ENST00000642059 1811 ntBASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 USP50-205ENST00000616326 1419 ntAPPRIS ALT2 TSL 5 BASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 NEXMIF-203ENST00000616200 10624 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 MAPK10-371ENST00000641952 5209 ntBASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 SH3YL1-203ENST00000403657 3540 ntTSL 2 BASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 AKAP5-202ENST00000394718 6487 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 LINC00463-201ENST00000413501 1147 ntTSL 3 BASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 AL592293.2-201ENST00000422292 996 ntBASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 RPL19P16-201ENST00000433839 588 ntBASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 INTS6-AS1-201ENST00000434512 466 ntTSL 3 BASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 RPL23AP83-201ENST00000434984 473 ntBASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 NDUFB4P12-201ENST00000513465 390 ntBASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 AP001781.1-201ENST00000530977 207 ntBASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 AC073862.1-201ENST00000537998 409 ntTSL 3 BASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 AC022523.3-201ENST00000559643 410 ntTSL 3 BASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 AP001267.4-201ENST00000602598 545 ntBASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 IPO5-229ENST00000631030 192 ntTSL 5 BASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 PLEKHS1-204ENST00000369310 2046 ntAPPRIS ALT2 TSL 1 (best) BASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 CDH10-201ENST00000264463 3438 ntAPPRIS P1 TSL 1 (best) BASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 CLASP2-205ENST00000461133 4814 ntTSL 5 BASIC6.5□□□□□ -1.37
SHANK3Q9BYB0 AC138907.8-201ENST00000623981 2256 ntBASIC6.5□□□□□ -1.37
Retrieved 100 of 98,524 protein–RNA pairs in 71.7 ms