Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 AL163195.3-202ENST00000555283 578 ntAPPRIS P1 TSL 4 BASIC5.74□□□□□ -1.49
CCDC112Q8NEF3 AC022404.1-201ENST00000555320 273 ntBASIC5.74□□□□□ -1.49
CCDC112Q8NEF3 AC104996.1-201ENST00000583250 591 ntTSL 5 BASIC5.74□□□□□ -1.49
CCDC112Q8NEF3 AC012616.1-201ENST00000600294 197 ntBASIC5.74□□□□□ -1.49
CCDC112Q8NEF3 MAPK10-235ENST00000638225 8941 ntAPPRIS P2 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC112Q8NEF3 ADCY10-202ENST00000367851 5051 ntAPPRIS P1 TSL 1 (best) BASIC5.74□□□□□ -1.49
CCDC112Q8NEF3 AP000542.2-201ENST00000623199 6179 ntBASIC5.74□□□□□ -1.49
CCDC112Q8NEF3 OR13C1P-202ENST00000641378 2919 ntBASIC5.74□□□□□ -1.49
CCDC112Q8NEF3 INPP4B-215ENST00000509777 4334 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 OR5A1-202ENST00000641045 8612 ntAPPRIS P1 BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 AL353796.1-201ENST00000561542 3241 ntBASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 ATP8B4-211ENST00000559829 4894 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 CMYA5-201ENST00000446378 12847 ntAPPRIS P1 TSL 5 BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 SSX1-201ENST00000376919 1298 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 LINC01762-201ENST00000423907 454 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 AC011900.1-201ENST00000446838 2999 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 RPS27AP2-201ENST00000457576 465 ntBASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 RN7SL189P-201ENST00000468631 289 ntBASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 RPS4XP14-201ENST00000493072 781 ntBASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 AC073073.1-201ENST00000493920 463 ntBASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 AC073358.1-201ENST00000505671 684 ntBASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 HMGB1P44-201ENST00000508597 572 ntBASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 AC109481.1-201ENST00000509173 282 ntBASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 RNU6-615P-201ENST00000516065 106 ntBASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 SCARNA16.4-201ENST00000516956 187 ntBASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 AC025437.5-201ENST00000522769 314 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 AC135626.1-201ENST00000556983 435 ntBASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 AC092078.2-201ENST00000560900 581 ntTSL 4 BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 AC005341.1-201ENST00000571086 708 ntBASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 AC010547.6-201ENST00000571789 193 ntBASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 AC015802.2-201ENST00000589690 189 ntBASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 AC108359.1-201ENST00000616451 1211 ntBASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 MIR8069-1-201ENST00000616627 86 ntBASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 MIR8069-2-201ENST00000621412 86 ntBASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 AC079298.3-203ENST00000623269 555 ntTSL 3 BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 AL691477.1-201ENST00000624398 162 ntBASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 SATB1-AS1-263ENST00000630022 622 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 IGLV10-54-202ENST00000640991 351 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 TNFSF18-201ENST00000404377 2008 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 WDHD1-201ENST00000360586 5996 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 MS4A1-207ENST00000532073 2560 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 VCAM1-203ENST00000370115 2475 ntTSL 5 BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 RASGEF1B-207ENST00000509081 3016 ntAPPRIS ALT1 TSL 5 BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 CSMD3-203ENST00000343508 13018 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 B3GNT5-201ENST00000326505 4123 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 INPP4B-220ENST00000513000 8831 ntAPPRIS P1 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 PTPN13-201ENST00000316707 7546 ntAPPRIS ALT2 TSL 1 (best) BASIC5.73□□□□□ -1.49
CCDC112Q8NEF3 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 ZNF836-204ENST00000597252 3209 ntAPPRIS P2 TSL 2 BASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 SRRM1P3-201ENST00000426911 2678 ntBASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 EMSY-205ENST00000524767 4116 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 GJA9-202ENST00000360786 1901 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 FAM204A-203ENST00000369183 13889 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 AL449283.1-201ENST00000602631 3403 ntBASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 OR5AU1-203ENST00000641697 7755 ntAPPRIS P1 BASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 RAD17-203ENST00000345306 2789 ntTSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 SYCP1-201ENST00000369518 3452 ntAPPRIS P1 TSL 5 BASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 AC021035.1-201ENST00000421597 427 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 AL021153.1-201ENST00000427360 308 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 BX323845.3-201ENST00000428215 527 ntBASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 AC009238.2-201ENST00000431026 355 ntBASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 AL161722.2-201ENST00000434731 981 ntBASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 LINC01496-201ENST00000448761 460 ntTSL 5 BASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 AC112206.1-201ENST00000468416 477 ntBASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 RN7SL423P-201ENST00000486202 304 ntBASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 RPL37-204ENST00000508493 553 ntAPPRIS ALT1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 AP003086.3-201ENST00000527030 365 ntTSL 3 BASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 AC027544.3-201ENST00000535082 757 ntBASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 IGBP1P1-201ENST00000554337 1009 ntBASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 MRPS21P7-201ENST00000566937 238 ntBASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 AC020978.7-201ENST00000575953 1187 ntBASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 MTCO1P1-201ENST00000624263 1081 ntBASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 MIR193BHG-214ENST00000641765 509 ntBASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 OR5AQ1P-203ENST00000641818 1529 ntBASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 ANAPC1P1-201ENST00000426186 2145 ntBASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 ZBTB8A-202ENST00000373510 7075 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 MTUS1-203ENST00000381861 3996 ntAPPRIS P4 TSL 2 BASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 ZKSCAN8-201ENST00000330236 7376 ntAPPRIS P1 TSL 1 (best) BASIC5.72□□□□□ -1.49
CCDC112Q8NEF3 AP002518.1-201ENST00000534904 3837 ntTSL 1 (best) BASIC5.71□□□□□ -1.49
CCDC112Q8NEF3 AC087257.1-201ENST00000506925 2639 ntTSL 4 BASIC5.71□□□□□ -1.5
CCDC112Q8NEF3 IREB2-201ENST00000258886 6354 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC112Q8NEF3 U3.25-201ENST00000391209 220 ntBASIC5.71□□□□□ -1.5
CCDC112Q8NEF3 RPL34-203ENST00000394668 853 ntAPPRIS P1 TSL 1 (best) BASIC5.71□□□□□ -1.5
CCDC112Q8NEF3 MYL12B-202ENST00000400175 1025 ntAPPRIS P1 TSL 3 BASIC5.71□□□□□ -1.5
CCDC112Q8NEF3 AC073257.2-201ENST00000413991 528 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC112Q8NEF3 Z98742.1-201ENST00000419801 632 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC112Q8NEF3 AL390115.1-201ENST00000425271 423 ntTSL 5 BASIC5.71□□□□□ -1.5
CCDC112Q8NEF3 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC5.71□□□□□ -1.5
CCDC112Q8NEF3 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC5.71□□□□□ -1.5
CCDC112Q8NEF3 AL450996.1-201ENST00000445574 1202 ntBASIC5.71□□□□□ -1.5
Retrieved 100 of 98,524 protein–RNA pairs in 90.7 ms