Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 LINC02303-204ENST00000555442 889 ntTSL 3 BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 TRIP11-201ENST00000267622 9996 ntAPPRIS P2 TSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 TGIF1-208ENST00000472042 2214 ntTSL 2 BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 CPEB4-202ENST00000334035 6705 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 SLC30A6-201ENST00000282587 5089 ntAPPRIS P1 TSL 1 (best) BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC6.32□□□□□ -1.4
CCDC88AQ3V6T2 NAT2-201ENST00000286479 1322 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 TTC41P-205ENST00000551270 3963 ntBASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 STAG2-201ENST00000218089 5218 ntAPPRIS ALT1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 IGSF10-201ENST00000282466 11067 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 LMNTD1-201ENST00000282881 1718 ntAPPRIS P3 TSL 2 BASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 LINC01844-201ENST00000432677 2237 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 ZNF532-214ENST00000589288 5585 ntAPPRIS P1 TSL 5 BASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 AC099506.1-201ENST00000567359 4037 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 LINC01317-201ENST00000366209 779 ntTSL 5 BASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 BANF2-202ENST00000377805 444 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 LINC01731-201ENST00000428035 420 ntTSL 3 BASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 ATP6V0E1P2-201ENST00000441771 245 ntBASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 AC005412.2-201ENST00000492004 341 ntBASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 AC136777.2-201ENST00000522979 358 ntBASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 AC084824.2-201ENST00000548906 345 ntBASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 AC109462.2-201ENST00000558730 763 ntTSL 3 BASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 TVP23CP2-201ENST00000571473 623 ntBASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 SS18L2P2-201ENST00000583960 235 ntBASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 AL512782.1-201ENST00000603093 364 ntBASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 LINC01152-201ENST00000472655 3578 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 SOAT1-201ENST00000367619 6835 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 ZFAND6-213ENST00000559835 1446 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 TLR2-201ENST00000260010 4200 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 AL669831.5-218ENST00000591702 1873 ntBASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 CNOT1-202ENST00000441024 4999 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC6.31□□□□□ -1.4
CCDC88AQ3V6T2 RAD17-201ENST00000282891 2135 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 TRAV16-201ENST00000390444 329 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 MIR1182-201ENST00000408363 97 ntBASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 RNU4-25P-201ENST00000410569 230 ntBASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 ELOCP19-201ENST00000411919 318 ntBASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 AC234779.1-201ENST00000425910 285 ntBASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 AC091685.1-201ENST00000442436 448 ntTSL 3 BASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 Z73495.1-201ENST00000444982 147 ntTSL 3 BASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 PSAT1P4-201ENST00000466500 526 ntBASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 IGKV1-32-201ENST00000519290 311 ntBASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 PDCD6IPP2-207ENST00000566321 1069 ntBASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 MYLK-221ENST00000583087 678 ntTSL 4 BASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 AC025857.2-201ENST00000602711 238 ntBASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 AL109618.2-201ENST00000605527 211 ntBASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 AC019193.2-201ENST00000610012 634 ntBASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 POGZ-204ENST00000392723 6152 ntTSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 ESRRG-224ENST00000616180 5194 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 ANKRD44-201ENST00000282272 5147 ntAPPRIS P1 TSL 5 BASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 AL137100.1-201ENST00000556703 1620 ntBASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 SLFN12-201ENST00000304905 2383 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 ZFYVE16-206ENST00000510158 6680 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 SAMM50P1-201ENST00000455403 1399 ntBASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 ZC3H14-201ENST00000251038 18281 ntAPPRIS P3 TSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 SNRPB2-202ENST00000377943 1588 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 LARS-201ENST00000274562 2213 ntTSL 2 BASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 FREM2-201ENST00000280481 16070 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 MAX-203ENST00000341653 330 ntTSL 2 BASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 CBX1P1-201ENST00000440184 427 ntBASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 OR52J1P-201ENST00000450596 932 ntBASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 SNAP25-AS1-204ENST00000451151 867 ntTSL 2 BASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 HMGN2P25-201ENST00000486956 268 ntBASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 LINC02438-201ENST00000505347 641 ntTSL 3 BASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 OSGEPL1-AS1-203ENST00000523895 567 ntTSL 4 BASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 ASB8-204ENST00000536071 568 ntTSL 4 BASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 AP001880.2-201ENST00000538233 448 ntBASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 AC087500.2-201ENST00000575056 498 ntTSL 5 BASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 AC090371.2-203ENST00000578782 473 ntTSL 3 BASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 MIR4284-201ENST00000578924 81 ntBASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 DAB1-AS1-208ENST00000586465 748 ntTSL 5 BASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 AC243585.1-201ENST00000617867 607 ntTSL 3 BASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 AC010401.2-201ENST00000575137 4934 ntBASIC6.3□□□□□ -1.4
CCDC88AQ3V6T2 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 PDGFRA-206ENST00000508170 2202 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 ZNF26-202ENST00000534834 4853 ntAPPRIS ALT2 TSL 2 BASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 MEF2C-244ENST00000636998 5936 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 R3HDM1-203ENST00000409606 3673 ntAPPRIS ALT1 TSL 2 BASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 RNA5SP515-201ENST00000364570 118 ntBASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 MIR23A-201ENST00000385245 73 ntBASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 MIR1193-201ENST00000408109 78 ntBASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 RN7SKP17-201ENST00000411242 351 ntBASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 AL929472.2-201ENST00000419993 481 ntTSL 5 BASIC6.29□□□□□ -1.4
CCDC88AQ3V6T2 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC6.29□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 138 ms