Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 RN7SL346P-201ENST00000491561 294 ntBASIC5.53□□□□□ -1.52
COL28A1Q2UY09 OR9N1P-202ENST00000494289 481 ntBASIC5.53□□□□□ -1.52
COL28A1Q2UY09 BACH1-IT1-201ENST00000504298 821 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 LINC02224-201ENST00000505706 584 ntTSL 4 BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 AC114954.1-201ENST00000506656 820 ntTSL 3 BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 CYP4F27P-201ENST00000514557 494 ntBASIC5.53□□□□□ -1.52
COL28A1Q2UY09 AC140125.1-201ENST00000515739 684 ntTSL 5 BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 AC103833.1-201ENST00000517442 172 ntBASIC5.53□□□□□ -1.52
COL28A1Q2UY09 AC008632.1-202ENST00000518605 452 ntTSL 3 BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 AC087664.1-201ENST00000521456 358 ntTSL 3 BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 AP001922.4-201ENST00000526967 290 ntBASIC5.53□□□□□ -1.52
COL28A1Q2UY09 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 AC092451.2-201ENST00000538746 658 ntBASIC5.53□□□□□ -1.52
COL28A1Q2UY09 FOPNL-207ENST00000575073 530 ntTSL 2 BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 AC024592.1-202ENST00000590441 341 ntTSL 3 BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 MIR132-201ENST00000591554 101 ntBASIC5.53□□□□□ -1.52
COL28A1Q2UY09 ZNF418-210ENST00000600989 597 ntTSL 5 BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 AC004890.3-201ENST00000605566 1095 ntBASIC5.53□□□□□ -1.52
COL28A1Q2UY09 AL450270.1-201ENST00000606160 391 ntBASIC5.53□□□□□ -1.52
COL28A1Q2UY09 AL159169.2-201ENST00000610061 1269 ntBASIC5.53□□□□□ -1.52
COL28A1Q2UY09 AC244517.5-203ENST00000624778 517 ntTSL 2 BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 OR2M2-202ENST00000641211 1229 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 OR2M2-203ENST00000641836 1151 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 MCF2L2-202ENST00000414362 3031 ntTSL 2 BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 DOCK10-202ENST00000409592 7288 ntAPPRIS ALT2 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 SGO1-205ENST00000419233 1582 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 LINC01470-202ENST00000506723 2193 ntTSL 2 BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 AC004158.1-201ENST00000564508 4319 ntBASIC5.53□□□□□ -1.52
COL28A1Q2UY09 AC009501.3-201ENST00000605001 1352 ntBASIC5.53□□□□□ -1.52
COL28A1Q2UY09 AL591135.1-201ENST00000401578 5914 ntBASIC5.53□□□□□ -1.52
COL28A1Q2UY09 AGO2-201ENST00000220592 14581 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
COL28A1Q2UY09 COL14A1-209ENST00000537875 3119 ntTSL 5 BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 SUCLG1-201ENST00000393868 1475 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 TCF12-214ENST00000559710 1314 ntTSL 2 BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 RNF20-202ENST00000389120 3940 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 PTPRZ1-201ENST00000393386 8175 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 NRDC-213ENST00000539524 3417 ntAPPRIS ALT2 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 AC114786.1-201ENST00000512892 1415 ntBASIC5.52□□□□□ -1.53
COL28A1Q2UY09 HIST1H1A-201ENST00000244573 648 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 TSPAN8-201ENST00000247829 1227 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 OR8I2-201ENST00000302124 1010 ntAPPRIS P1 BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 OR10R3P-201ENST00000361688 942 ntBASIC5.52□□□□□ -1.53
COL28A1Q2UY09 RNA5SP319-201ENST00000362768 119 ntBASIC5.52□□□□□ -1.53
COL28A1Q2UY09 RNU6-609P-201ENST00000365459 107 ntBASIC5.52□□□□□ -1.53
COL28A1Q2UY09 TPT1-204ENST00000379060 764 ntTSL 5 BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 Z86062.1-201ENST00000406773 777 ntBASIC5.52□□□□□ -1.53
COL28A1Q2UY09 AC015977.1-201ENST00000418887 292 ntBASIC5.52□□□□□ -1.53
COL28A1Q2UY09 AC005033.1-201ENST00000428904 813 ntBASIC5.52□□□□□ -1.53
COL28A1Q2UY09 AL031599.1-201ENST00000432694 808 ntTSL 3 BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 AL031123.1-201ENST00000432823 568 ntTSL 2 BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 MTND2P21-201ENST00000436242 1042 ntBASIC5.52□□□□□ -1.53
COL28A1Q2UY09 CYCSP12-201ENST00000437729 300 ntBASIC5.52□□□□□ -1.53
COL28A1Q2UY09 AL035446.1-201ENST00000455011 453 ntTSL 5 BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 MTND2P39-201ENST00000457230 764 ntBASIC5.52□□□□□ -1.53
COL28A1Q2UY09 RPS21P4-201ENST00000487122 248 ntBASIC5.52□□□□□ -1.53
COL28A1Q2UY09 EIF1P7-201ENST00000487533 337 ntBASIC5.52□□□□□ -1.53
COL28A1Q2UY09 AC083795.1-201ENST00000491760 320 ntBASIC5.52□□□□□ -1.53
COL28A1Q2UY09 CFLAR-225ENST00000494258 693 ntTSL 3 BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 HMGB1P3-201ENST00000502802 616 ntBASIC5.52□□□□□ -1.53
COL28A1Q2UY09 GYPA-203ENST00000503627 318 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 EDNRA-204ENST00000506066 1032 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 PGAM1P13-201ENST00000507497 754 ntBASIC5.52□□□□□ -1.53
COL28A1Q2UY09 LINC02358-201ENST00000514413 465 ntTSL 5 BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 LINC01030-201ENST00000517505 738 ntTSL 3 BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 IGLVIV-66-1-201ENST00000521832 460 ntBASIC5.52□□□□□ -1.53
COL28A1Q2UY09 AP002815.1-201ENST00000533740 386 ntTSL 3 BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 AC006511.5-202ENST00000546339 1198 ntTSL 5 BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 LINC02327-205ENST00000550990 472 ntTSL 3 BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 AL049835.1-201ENST00000555850 514 ntTSL 3 BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 AC005774.1-201ENST00000565247 567 ntTSL 4 BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 AC008109.1-201ENST00000583163 826 ntTSL 2 BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 AC004775.1-201ENST00000607389 753 ntBASIC5.52□□□□□ -1.53
COL28A1Q2UY09 AL096803.3-201ENST00000609032 532 ntBASIC5.52□□□□□ -1.53
COL28A1Q2UY09 AP006248.3-201ENST00000623580 594 ntBASIC5.52□□□□□ -1.53
COL28A1Q2UY09 AC012593.1-212ENST00000627058 580 ntTSL 5 BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 AC109462.4-201ENST00000637882 581 ntTSL 5 BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 MAP2-205ENST00000392194 5303 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 AC048341.2-201ENST00000550290 8693 ntTSL 4 BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 METTL6-203ENST00000443029 4020 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 CCDC18-AS1-205ENST00000421202 2973 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 CKAP2-207ENST00000490903 3395 ntAPPRIS ALT2 TSL 2 BASIC5.52□□□□□ -1.53
COL28A1Q2UY09 BIRC3-207ENST00000615299 4342 ntAPPRIS P1 TSL 5 BASIC5.51□□□□□ -1.53
COL28A1Q2UY09 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.51□□□□□ -1.53
COL28A1Q2UY09 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC5.51□□□□□ -1.53
COL28A1Q2UY09 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.51□□□□□ -1.53
COL28A1Q2UY09 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC5.51□□□□□ -1.53
COL28A1Q2UY09 DNAH14-203ENST00000366848 929 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL28A1Q2UY09 AL672167.2-201ENST00000377164 879 ntBASIC5.51□□□□□ -1.53
COL28A1Q2UY09 TAS2R31-201ENST00000390675 1021 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
COL28A1Q2UY09 RRM2B-203ENST00000395912 900 ntTSL 1 (best) BASIC5.51□□□□□ -1.53
COL28A1Q2UY09 CYB5AP4-201ENST00000396692 399 ntBASIC5.51□□□□□ -1.53
COL28A1Q2UY09 OR2A25-201ENST00000408898 1014 ntAPPRIS P1 BASIC5.51□□□□□ -1.53
COL28A1Q2UY09 BTF3P9-201ENST00000418784 283 ntBASIC5.51□□□□□ -1.53
COL28A1Q2UY09 PRUNEP1-201ENST00000425846 705 ntBASIC5.51□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 73.5 ms