Protein–RNA interactions for Protein: P39880

CUX1, Homeobox protein cut-like 1, humanhuman

Predictions only

Length 1,505 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1P39880 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
CUX1P39880 NCLP2-201ENST00000416078 1462 ntBASIC8.37□□□□□ -1.07
CUX1P39880 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC8.37□□□□□ -1.07
CUX1P39880 AL031320.2-201ENST00000591892 2079 ntTSL 5 BASIC8.37□□□□□ -1.07
CUX1P39880 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC8.37□□□□□ -1.07
CUX1P39880 ARPP21-202ENST00000396481 1304 ntTSL 1 (best) BASIC8.37□□□□□ -1.07
CUX1P39880 NRG1-220ENST00000539990 2401 ntTSL 2 BASIC8.37□□□□□ -1.07
CUX1P39880 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC8.36□□□□□ -1.07
CUX1P39880 NKIRAS1-209ENST00000614374 1612 ntAPPRIS P2 TSL 1 (best) BASIC8.36□□□□□ -1.07
CUX1P39880 LARP4-203ENST00000398473 6427 ntAPPRIS P3 TSL 1 (best) BASIC8.36□□□□□ -1.07
CUX1P39880 PRKDC-201ENST00000314191 13509 ntAPPRIS P4 TSL 1 (best) BASIC8.36□□□□□ -1.07
CUX1P39880 RNA5SP515-201ENST00000364570 118 ntBASIC8.36□□□□□ -1.07
CUX1P39880 SNORA70.10-201ENST00000384515 134 ntBASIC8.36□□□□□ -1.07
CUX1P39880 MAST4-207ENST00000407621 559 ntTSL 2 BASIC8.36□□□□□ -1.07
CUX1P39880 RNA5SP345-201ENST00000410646 108 ntBASIC8.36□□□□□ -1.07
CUX1P39880 RPEP3-201ENST00000425462 676 ntBASIC8.36□□□□□ -1.07
CUX1P39880 AL732292.1-201ENST00000426692 226 ntBASIC8.36□□□□□ -1.07
CUX1P39880 AC092811.1-201ENST00000428642 397 ntTSL 3 BASIC8.36□□□□□ -1.07
CUX1P39880 AC099670.2-201ENST00000435130 321 ntBASIC8.36□□□□□ -1.07
CUX1P39880 AL136455.1-201ENST00000441083 1240 ntBASIC8.36□□□□□ -1.07
CUX1P39880 SSR3-206ENST00000476217 807 ntTSL 3 BASIC8.36□□□□□ -1.07
CUX1P39880 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC8.36□□□□□ -1.07
CUX1P39880 AC068831.4-201ENST00000556118 109 ntBASIC8.36□□□□□ -1.07
CUX1P39880 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC8.36□□□□□ -1.07
CUX1P39880 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC8.36□□□□□ -1.07
CUX1P39880 ZNF644-204ENST00000370440 5702 ntAPPRIS P1 TSL 5 BASIC8.36□□□□□ -1.07
CUX1P39880 ANKRD31-203ENST00000506364 6207 ntAPPRIS ALT2 TSL 5 BASIC8.36□□□□□ -1.07
CUX1P39880 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC8.36□□□□□ -1.07
CUX1P39880 ZCCHC6-204ENST00000375957 2262 ntTSL 2 BASIC8.36□□□□□ -1.07
CUX1P39880 MBNL2-204ENST00000397601 4487 ntTSL 5 BASIC8.36□□□□□ -1.07
CUX1P39880 KIAA0408-204ENST00000483725 3284 ntAPPRIS P2 TSL 5 BASIC8.36□□□□□ -1.07
CUX1P39880 ZBBX-202ENST00000392764 2849 ntAPPRIS ALT2 TSL 1 (best) BASIC8.36□□□□□ -1.07
CUX1P39880 ADH6-202ENST00000394897 3337 ntTSL 2 BASIC8.36□□□□□ -1.07
CUX1P39880 ATF7IP2-201ENST00000324570 3396 ntTSL 5 BASIC8.36□□□□□ -1.07
CUX1P39880 OR5B2-202ENST00000641342 2184 ntAPPRIS P1 BASIC8.36□□□□□ -1.07
CUX1P39880 AC092329.3-201ENST00000611392 1904 ntAPPRIS P1 TSL 5 BASIC8.36□□□□□ -1.07
CUX1P39880 LARS-201ENST00000274562 2213 ntTSL 2 BASIC8.36□□□□□ -1.07
CUX1P39880 LINC01776-201ENST00000418344 2229 ntTSL 2 BASIC8.36□□□□□ -1.07
CUX1P39880 MEF2C-226ENST00000625674 4343 ntAPPRIS P3 TSL 5 BASIC8.36□□□□□ -1.07
CUX1P39880 NRXN1-242ENST00000635519 3553 ntTSL 5 BASIC8.35□□□□□ -1.07
CUX1P39880 CASP1-215ENST00000533400 2001 ntAPPRIS P4 TSL 1 (best) BASIC8.35□□□□□ -1.07
CUX1P39880 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC8.35□□□□□ -1.07
CUX1P39880 RNA5SP447-201ENST00000363749 119 ntBASIC8.35□□□□□ -1.07
CUX1P39880 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC8.35□□□□□ -1.07
CUX1P39880 AC114755.2-201ENST00000413520 361 ntBASIC8.35□□□□□ -1.07
CUX1P39880 AL691482.1-201ENST00000453255 87 ntBASIC8.35□□□□□ -1.07
CUX1P39880 ATP5A1P7-201ENST00000453978 1279 ntBASIC8.35□□□□□ -1.07
CUX1P39880 HMGB1P4-201ENST00000455362 567 ntBASIC8.35□□□□□ -1.07
CUX1P39880 OR11I1P-201ENST00000486033 954 ntBASIC8.35□□□□□ -1.07
CUX1P39880 OR2A3P-201ENST00000493774 953 ntBASIC8.35□□□□□ -1.07
CUX1P39880 AC010230.1-202ENST00000506265 592 ntTSL 5 BASIC8.35□□□□□ -1.07
CUX1P39880 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC8.35□□□□□ -1.07
CUX1P39880 LINC00589-202ENST00000518623 938 ntTSL 4 BASIC8.35□□□□□ -1.07
CUX1P39880 PARP1P2-201ENST00000556806 195 ntBASIC8.35□□□□□ -1.07
CUX1P39880 AC005856.1-201ENST00000585921 286 ntTSL 3 BASIC8.35□□□□□ -1.07
CUX1P39880 AC079414.3-201ENST00000612986 1090 ntBASIC8.35□□□□□ -1.07
CUX1P39880 MLECP1-201ENST00000615893 709 ntBASIC8.35□□□□□ -1.07
CUX1P39880 AC011944.2-201ENST00000624440 683 ntBASIC8.35□□□□□ -1.07
CUX1P39880 ECM1P2-201ENST00000503354 1577 ntBASIC8.35□□□□□ -1.07
CUX1P39880 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
CUX1P39880 ERVH48-1-201ENST00000447535 2790 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
CUX1P39880 UNC13B-210ENST00000636694 8012 ntTSL 5 BASIC8.35□□□□□ -1.07
CUX1P39880 AC138907.8-201ENST00000623981 2256 ntBASIC8.35□□□□□ -1.07
CUX1P39880 FOXP2-207ENST00000393494 2664 ntAPPRIS P2 TSL 5 BASIC8.35□□□□□ -1.07
CUX1P39880 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
CUX1P39880 SMCO1-201ENST00000397537 1812 ntAPPRIS P1 TSL 1 (best) BASIC8.35□□□□□ -1.07
CUX1P39880 PDGFRA-206ENST00000508170 2202 ntTSL 1 (best) BASIC8.35□□□□□ -1.07
CUX1P39880 IGF2R-201ENST00000356956 14044 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
CUX1P39880 SNORD113.2-201ENST00000364166 89 ntBASIC8.34□□□□□ -1.07
CUX1P39880 TRAV26-2-201ENST00000390460 327 ntAPPRIS P1 BASIC8.34□□□□□ -1.07
CUX1P39880 MTND4LP17-201ENST00000414607 293 ntBASIC8.34□□□□□ -1.07
CUX1P39880 CENPIP1-201ENST00000425713 902 ntBASIC8.34□□□□□ -1.07
CUX1P39880 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC8.34□□□□□ -1.07
CUX1P39880 TMEM212-AS1-201ENST00000449106 427 ntTSL 3 BASIC8.34□□□□□ -1.07
CUX1P39880 RN7SKP92-201ENST00000517266 244 ntBASIC8.34□□□□□ -1.07
CUX1P39880 MAL2-201ENST00000522112 573 ntTSL 4 BASIC8.34□□□□□ -1.07
CUX1P39880 TOMM20P2-201ENST00000540082 421 ntBASIC8.34□□□□□ -1.07
CUX1P39880 LINC02404-201ENST00000546710 1188 ntTSL 5 BASIC8.34□□□□□ -1.07
CUX1P39880 AP000919.1-201ENST00000582850 985 ntBASIC8.34□□□□□ -1.07
CUX1P39880 AC125494.2-201ENST00000602431 657 ntBASIC8.34□□□□□ -1.07
CUX1P39880 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC8.34□□□□□ -1.07
CUX1P39880 AC005962.2-201ENST00000611427 652 ntBASIC8.34□□□□□ -1.07
CUX1P39880 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC8.34□□□□□ -1.07
CUX1P39880 OR9G1-202ENST00000642097 3611 ntAPPRIS P1 BASIC8.34□□□□□ -1.07
CUX1P39880 ETF1-203ENST00000503014 1736 ntTSL 2 BASIC8.34□□□□□ -1.07
CUX1P39880 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
CUX1P39880 FAM47E-202ENST00000502320 6249 ntAPPRIS ALT2 TSL 2 BASIC8.34□□□□□ -1.07
CUX1P39880 ERI2-202ENST00000357967 3499 ntAPPRIS P1 TSL 5 BASIC8.34□□□□□ -1.07
CUX1P39880 PDGFRA-201ENST00000257290 6576 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
CUX1P39880 MTAP-210ENST00000580900 7557 ntTSL 1 (best) BASIC8.34□□□□□ -1.07
CUX1P39880 ITGB1-205ENST00000423113 3729 ntAPPRIS ALT1 TSL 5 BASIC8.34□□□□□ -1.07
CUX1P39880 CFI-202ENST00000394635 2053 ntAPPRIS ALT2 TSL 2 BASIC8.34□□□□□ -1.07
CUX1P39880 LRRC19-201ENST00000380055 3609 ntAPPRIS P1 TSL 1 (best) BASIC8.34□□□□□ -1.07
CUX1P39880 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC8.34□□□□□ -1.07
CUX1P39880 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC8.34□□□□□ -1.08
CUX1P39880 AC004158.1-201ENST00000564508 4319 ntBASIC8.34□□□□□ -1.08
CUX1P39880 TRAV12-2-201ENST00000390437 445 ntAPPRIS P1 BASIC8.34□□□□□ -1.08
CUX1P39880 MIR298-201ENST00000401212 88 ntBASIC8.34□□□□□ -1.08
CUX1P39880 U3.32-201ENST00000408116 212 ntBASIC8.34□□□□□ -1.08
CUX1P39880 TBCAP2-201ENST00000416175 326 ntBASIC8.34□□□□□ -1.08
Retrieved 100 of 98,524 protein–RNA pairs in 102.9 ms