Protein–RNA interactions for Protein: P34897

SHMT2, Serine hydroxymethyltransferase, mitochondrial, humanhuman

Predictions only

Length 504 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2P34897 AC235565.1-201ENST00000456962 1325 ntBASIC5.14□□□□□ -1.59
SHMT2P34897 TBC1D23-201ENST00000344949 3656 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SHMT2P34897 MNS1-201ENST00000260453 2023 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
SHMT2P34897 CTAGE5-207ENST00000396165 3071 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SHMT2P34897 MARCH1-202ENST00000339875 2476 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
SHMT2P34897 PRPF4B-201ENST00000337659 4415 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SHMT2P34897 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SHMT2P34897 AC090518.1-201ENST00000562300 1495 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SHMT2P34897 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.13□□□□□ -1.59
SHMT2P34897 KMO-203ENST00000366558 1868 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
SHMT2P34897 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.13□□□□□ -1.59
SHMT2P34897 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.13□□□□□ -1.59
SHMT2P34897 AGO3-203ENST00000373191 19687 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
SHMT2P34897 SFT2D2-201ENST00000271375 11040 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SHMT2P34897 ZNF733P-202ENST00000444809 1573 ntBASIC5.13□□□□□ -1.59
SHMT2P34897 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC5.13□□□□□ -1.59
SHMT2P34897 AC011493.1-201ENST00000596753 1632 ntBASIC5.13□□□□□ -1.59
SHMT2P34897 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SHMT2P34897 OR9Q2-202ENST00000641291 3774 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
SHMT2P34897 WFDC11-201ENST00000324384 614 ntAPPRIS P1 TSL 1 (best) BASIC5.13□□□□□ -1.59
SHMT2P34897 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.13□□□□□ -1.59
SHMT2P34897 RNU6-171P-201ENST00000384354 107 ntBASIC5.13□□□□□ -1.59
SHMT2P34897 CTSL3P-202ENST00000412179 788 ntBASIC5.13□□□□□ -1.59
SHMT2P34897 RPL12P9-201ENST00000412942 488 ntBASIC5.13□□□□□ -1.59
SHMT2P34897 Z68694.1-201ENST00000413929 841 ntBASIC5.13□□□□□ -1.59
SHMT2P34897 COX5BP7-201ENST00000414780 274 ntBASIC5.13□□□□□ -1.59
SHMT2P34897 AC013472.2-201ENST00000416226 306 ntTSL 3 BASIC5.13□□□□□ -1.59
SHMT2P34897 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC5.13□□□□□ -1.59
SHMT2P34897 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SHMT2P34897 AC013410.1-201ENST00000436223 1232 ntBASIC5.13□□□□□ -1.59
SHMT2P34897 LINC00969-211ENST00000438608 525 ntTSL 5 BASIC5.13□□□□□ -1.59
SHMT2P34897 CNOT7P2-201ENST00000441051 832 ntBASIC5.13□□□□□ -1.59
SHMT2P34897 AC016772.1-201ENST00000444170 1261 ntBASIC5.13□□□□□ -1.59
SHMT2P34897 KCNMB2-AS1-205ENST00000451742 844 ntTSL 4 BASIC5.13□□□□□ -1.59
SHMT2P34897 Z92846.1-201ENST00000456203 268 ntBASIC5.13□□□□□ -1.59
SHMT2P34897 TFDP2-211ENST00000479040 1201 ntAPPRIS ALT2 TSL 1 (best) BASIC5.13□□□□□ -1.59
SHMT2P34897 AC079841.1-201ENST00000481228 950 ntBASIC5.13□□□□□ -1.59
SHMT2P34897 AC090142.2-201ENST00000483263 416 ntBASIC5.13□□□□□ -1.59
SHMT2P34897 RN7SL214P-201ENST00000487317 265 ntBASIC5.13□□□□□ -1.59
SHMT2P34897 AC023424.1-201ENST00000496058 459 ntBASIC5.13□□□□□ -1.59
SHMT2P34897 IGBP1P4-201ENST00000503202 879 ntBASIC5.13□□□□□ -1.59
SHMT2P34897 AC006499.3-201ENST00000506077 748 ntBASIC5.13□□□□□ -1.59
SHMT2P34897 AC098976.1-201ENST00000513014 541 ntBASIC5.13□□□□□ -1.59
SHMT2P34897 AC091435.2-201ENST00000514586 565 ntTSL 4 BASIC5.13□□□□□ -1.59
SHMT2P34897 AP003696.1-201ENST00000519337 770 ntTSL 3 BASIC5.13□□□□□ -1.59
SHMT2P34897 AC131532.1-201ENST00000555596 519 ntTSL 4 BASIC5.13□□□□□ -1.59
SHMT2P34897 AC109460.2-201ENST00000569974 544 ntTSL 3 BASIC5.13□□□□□ -1.59
SHMT2P34897 AC002128.2-201ENST00000604161 618 ntTSL 5 BASIC5.13□□□□□ -1.59
SHMT2P34897 Metazoa_SRP.170-201ENST00000616060 254 ntBASIC5.13□□□□□ -1.59
SHMT2P34897 AP002505.2-201ENST00000623585 696 ntBASIC5.13□□□□□ -1.59
SHMT2P34897 LINC02246-206ENST00000630211 712 ntTSL 5 BASIC5.13□□□□□ -1.59
SHMT2P34897 AL603750.1-201ENST00000624216 1717 ntBASIC5.13□□□□□ -1.59
SHMT2P34897 AC005005.4-201ENST00000623789 16698 ntBASIC5.13□□□□□ -1.59
SHMT2P34897 KAT6B-201ENST00000287239 8287 ntAPPRIS P3 TSL 1 (best) BASIC5.13□□□□□ -1.59
SHMT2P34897 HERC4-205ENST00000412272 4211 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SHMT2P34897 CASC19-201ENST00000500112 5735 ntTSL 1 (best) BASIC5.13□□□□□ -1.59
SHMT2P34897 ERVW-1-201ENST00000493463 2925 ntAPPRIS P1 BASIC5.13□□□□□ -1.59
SHMT2P34897 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.13□□□□□ -1.59
SHMT2P34897 AL731532.2-201ENST00000623542 1953 ntBASIC5.13□□□□□ -1.59
SHMT2P34897 AL161911.1-202ENST00000464488 1534 ntAPPRIS P1 TSL 5 BASIC5.13□□□□□ -1.59
SHMT2P34897 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.13□□□□□ -1.59
SHMT2P34897 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC5.12□□□□□ -1.59
SHMT2P34897 TSPAN6-204ENST00000612152 3796 ntTSL 5 BASIC5.12□□□□□ -1.59
SHMT2P34897 HAT1-201ENST00000264108 1626 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SHMT2P34897 LINC01902-203ENST00000637369 7356 ntTSL 5 BASIC5.12□□□□□ -1.59
SHMT2P34897 LMOD2-202ENST00000458573 2346 ntAPPRIS P1 TSL 2 BASIC5.12□□□□□ -1.59
SHMT2P34897 KRR1-201ENST00000229214 10118 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SHMT2P34897 GRID2-208ENST00000611049 4844 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SHMT2P34897 PWRN2-202ENST00000567246 4295 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SHMT2P34897 UGP2-229ENST00000613823 1858 ntAPPRIS ALT1 TSL 5 BASIC5.12□□□□□ -1.59
SHMT2P34897 AC092747.4-201ENST00000620519 1861 ntBASIC5.12□□□□□ -1.59
SHMT2P34897 CCDC169-202ENST00000239860 716 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SHMT2P34897 GLYAT-201ENST00000278400 1150 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SHMT2P34897 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC5.12□□□□□ -1.59
SHMT2P34897 BX510359.3-201ENST00000422168 306 ntBASIC5.12□□□□□ -1.59
SHMT2P34897 RPL7AP49-201ENST00000429522 581 ntBASIC5.12□□□□□ -1.59
SHMT2P34897 AL591438.1-201ENST00000433508 581 ntBASIC5.12□□□□□ -1.59
SHMT2P34897 AC245047.2-201ENST00000441060 530 ntBASIC5.12□□□□□ -1.59
SHMT2P34897 MYO5BP2-201ENST00000449815 1277 ntBASIC5.12□□□□□ -1.59
SHMT2P34897 AL592431.1-201ENST00000451090 317 ntTSL 3 BASIC5.12□□□□□ -1.59
SHMT2P34897 DNAJB5P1-201ENST00000454004 806 ntBASIC5.12□□□□□ -1.59
SHMT2P34897 AC090589.1-201ENST00000473109 362 ntBASIC5.12□□□□□ -1.59
SHMT2P34897 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC5.12□□□□□ -1.59
SHMT2P34897 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC5.12□□□□□ -1.59
SHMT2P34897 GTF2F2P1-201ENST00000511083 675 ntBASIC5.12□□□□□ -1.59
SHMT2P34897 RNA5SP373-201ENST00000517271 95 ntBASIC5.12□□□□□ -1.59
SHMT2P34897 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC5.12□□□□□ -1.59
SHMT2P34897 AC012400.1-201ENST00000518452 381 ntBASIC5.12□□□□□ -1.59
SHMT2P34897 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.12□□□□□ -1.59
SHMT2P34897 RRM2B-206ENST00000519317 420 ntTSL 1 (best) BASIC5.12□□□□□ -1.59
SHMT2P34897 AC024940.3-201ENST00000538551 316 ntBASIC5.12□□□□□ -1.59
SHMT2P34897 LINC01580-201ENST00000555255 561 ntTSL 4 BASIC5.12□□□□□ -1.59
SHMT2P34897 MIR762HG-201ENST00000564901 648 ntTSL 2 BASIC5.12□□□□□ -1.59
SHMT2P34897 SLC14A2-AS1-201ENST00000585759 494 ntTSL 3 BASIC5.12□□□□□ -1.59
SHMT2P34897 AC090621.1-201ENST00000592121 419 ntTSL 3 BASIC5.12□□□□□ -1.59
SHMT2P34897 AC006504.7-201ENST00000592806 924 ntTSL 3 BASIC5.12□□□□□ -1.59
SHMT2P34897 AC009597.2-201ENST00000604659 592 ntBASIC5.12□□□□□ -1.59
SHMT2P34897 AC093495.1-217ENST00000627385 428 ntTSL 5 BASIC5.12□□□□□ -1.59
SHMT2P34897 SLC8A1-AS1-239ENST00000631142 623 ntTSL 5 BASIC5.12□□□□□ -1.59
SHMT2P34897 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC5.12□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 93 ms