Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 CDV3-208ENST00000511392 554 ntTSL 5 BASIC6.26□□□□□ -1.41
COL5A3P25940 MIR4715-201ENST00000584117 79 ntBASIC6.26□□□□□ -1.41
COL5A3P25940 RPL12P25-202ENST00000598100 674 ntBASIC6.26□□□□□ -1.41
COL5A3P25940 RPL26P30-202ENST00000602923 645 ntBASIC6.26□□□□□ -1.41
COL5A3P25940 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC6.26□□□□□ -1.41
COL5A3P25940 AC010857.1-201ENST00000606398 594 ntBASIC6.26□□□□□ -1.41
COL5A3P25940 AC007786.3-201ENST00000615154 596 ntBASIC6.26□□□□□ -1.41
COL5A3P25940 AC006338.2-201ENST00000616864 791 ntBASIC6.26□□□□□ -1.41
COL5A3P25940 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC6.26□□□□□ -1.41
COL5A3P25940 SH3D19-210ENST00000514152 5107 ntAPPRIS ALT1 TSL 2 BASIC6.26□□□□□ -1.41
COL5A3P25940 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC6.26□□□□□ -1.41
COL5A3P25940 PDE4D-228ENST00000636120 6659 ntTSL 5 BASIC6.26□□□□□ -1.41
COL5A3P25940 DOCK8-204ENST00000432829 7452 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL5A3P25940 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC6.26□□□□□ -1.41
COL5A3P25940 MID1-202ENST00000380779 6044 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL5A3P25940 CDH7-201ENST00000323011 2728 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL5A3P25940 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC6.26□□□□□ -1.41
COL5A3P25940 SASS6-201ENST00000287482 3880 ntAPPRIS P1 TSL 1 (best) BASIC6.26□□□□□ -1.41
COL5A3P25940 MSL3P1-202ENST00000440028 1468 ntBASIC6.25□□□□□ -1.41
COL5A3P25940 FGD4-213ENST00000546442 3503 ntTSL 5 BASIC6.25□□□□□ -1.41
COL5A3P25940 RNA5-8SP7-201ENST00000363443 155 ntBASIC6.25□□□□□ -1.41
COL5A3P25940 RNA5SP447-201ENST00000363749 119 ntBASIC6.25□□□□□ -1.41
COL5A3P25940 IGLV5-48-201ENST00000390293 369 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
COL5A3P25940 TRAV21-201ENST00000390449 343 ntAPPRIS P1 BASIC6.25□□□□□ -1.41
COL5A3P25940 AL121885.1-201ENST00000417957 451 ntTSL 3 BASIC6.25□□□□□ -1.41
COL5A3P25940 GLUD1P9-201ENST00000420997 1173 ntBASIC6.25□□□□□ -1.41
COL5A3P25940 RPL12P34-201ENST00000424532 479 ntBASIC6.25□□□□□ -1.41
COL5A3P25940 AC046176.1-201ENST00000435260 1170 ntBASIC6.25□□□□□ -1.41
COL5A3P25940 ARL2BPP10-201ENST00000446487 531 ntBASIC6.25□□□□□ -1.41
COL5A3P25940 MME-AS1-201ENST00000484721 828 ntTSL 2 BASIC6.25□□□□□ -1.41
COL5A3P25940 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC6.25□□□□□ -1.41
COL5A3P25940 AL033397.2-201ENST00000508884 547 ntTSL 2 BASIC6.25□□□□□ -1.41
COL5A3P25940 AC011396.2-202ENST00000511390 375 ntTSL 3 BASIC6.25□□□□□ -1.41
COL5A3P25940 AC026402.1-201ENST00000513642 170 ntBASIC6.25□□□□□ -1.41
COL5A3P25940 LINC00491-204ENST00000513815 582 ntTSL 4 BASIC6.25□□□□□ -1.41
COL5A3P25940 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC6.25□□□□□ -1.41
COL5A3P25940 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC6.25□□□□□ -1.41
COL5A3P25940 MTCYBP13-201ENST00000578634 1093 ntBASIC6.25□□□□□ -1.41
COL5A3P25940 ZNF283-207ENST00000593164 1260 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL5A3P25940 AC020915.5-201ENST00000596836 964 ntBASIC6.25□□□□□ -1.41
COL5A3P25940 ARHGEF6-203ENST00000370622 4779 ntTSL 1 (best) BASIC6.25□□□□□ -1.41
COL5A3P25940 OR56B2P-202ENST00000641377 2453 ntBASIC6.25□□□□□ -1.41
COL5A3P25940 AL513550.1-201ENST00000418945 1638 ntTSL 2 BASIC6.25□□□□□ -1.41
COL5A3P25940 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC6.25□□□□□ -1.41
COL5A3P25940 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL5A3P25940 AC016831.1-201ENST00000432045 6411 ntTSL 2 BASIC6.25□□□□□ -1.41
COL5A3P25940 BLZF1-203ENST00000367808 2749 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL5A3P25940 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL5A3P25940 MCM8-205ENST00000610722 7486 ntAPPRIS P4 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL5A3P25940 CHRM5-201ENST00000383263 5410 ntAPPRIS P1 TSL 2 BASIC6.25□□□□□ -1.41
COL5A3P25940 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC6.25□□□□□ -1.41
COL5A3P25940 ATXN10-203ENST00000402380 564 ntTSL 4 BASIC6.25□□□□□ -1.41
COL5A3P25940 AL158827.1-201ENST00000416300 391 ntBASIC6.25□□□□□ -1.41
COL5A3P25940 AL592293.2-201ENST00000422292 996 ntBASIC6.25□□□□□ -1.41
COL5A3P25940 CBX1P1-201ENST00000440184 427 ntBASIC6.25□□□□□ -1.41
COL5A3P25940 AC023271.1-201ENST00000445936 1090 ntBASIC6.25□□□□□ -1.41
COL5A3P25940 AC009963.2-201ENST00000453431 138 ntBASIC6.25□□□□□ -1.41
COL5A3P25940 OR11I1P-201ENST00000486033 954 ntBASIC6.25□□□□□ -1.41
COL5A3P25940 TVP23CP2-201ENST00000571473 623 ntBASIC6.25□□□□□ -1.41
COL5A3P25940 MIR5699-201ENST00000578903 90 ntBASIC6.25□□□□□ -1.41
COL5A3P25940 IGKV1OR2-9-201ENST00000603957 287 ntBASIC6.25□□□□□ -1.41
COL5A3P25940 IGKV1OR2-11-201ENST00000604120 287 ntBASIC6.25□□□□□ -1.41
COL5A3P25940 AC010424.2-201ENST00000607594 443 ntBASIC6.25□□□□□ -1.41
COL5A3P25940 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC6.25□□□□□ -1.41
COL5A3P25940 AC087821.1-201ENST00000623639 567 ntBASIC6.25□□□□□ -1.41
COL5A3P25940 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC6.24□□□□□ -1.41
COL5A3P25940 KIAA1549L-202ENST00000321505 11678 ntAPPRIS P2 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL5A3P25940 PLAGL1-205ENST00000392307 6296 ntTSL 2 BASIC6.24□□□□□ -1.41
COL5A3P25940 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC6.24□□□□□ -1.41
COL5A3P25940 LAMTOR3-202ENST00000499666 4226 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL5A3P25940 LRRN3-201ENST00000308478 3099 ntAPPRIS P1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL5A3P25940 ATF2-202ENST00000345739 4079 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL5A3P25940 SNORA73.1-201ENST00000363107 205 ntBASIC6.24□□□□□ -1.41
COL5A3P25940 U3.22-201ENST00000391120 215 ntBASIC6.24□□□□□ -1.41
COL5A3P25940 SNORA57.1-201ENST00000391227 145 ntBASIC6.24□□□□□ -1.41
COL5A3P25940 ATG4AP1-201ENST00000416893 538 ntBASIC6.24□□□□□ -1.41
COL5A3P25940 AL591178.1-201ENST00000439239 454 ntTSL 5 BASIC6.24□□□□□ -1.41
COL5A3P25940 AL136455.1-201ENST00000441083 1240 ntBASIC6.24□□□□□ -1.41
COL5A3P25940 AL161912.1-201ENST00000448475 524 ntTSL 3 BASIC6.24□□□□□ -1.41
COL5A3P25940 RPS5P7-201ENST00000456664 608 ntBASIC6.24□□□□□ -1.41
COL5A3P25940 RN7SKP92-201ENST00000517266 244 ntBASIC6.24□□□□□ -1.41
COL5A3P25940 AC091073.1-201ENST00000559620 666 ntTSL 3 BASIC6.24□□□□□ -1.41
COL5A3P25940 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC6.24□□□□□ -1.41
COL5A3P25940 AL590392.1-201ENST00000604960 446 ntBASIC6.24□□□□□ -1.41
COL5A3P25940 AC073218.2-202ENST00000605962 617 ntTSL 5 BASIC6.24□□□□□ -1.41
COL5A3P25940 INTS6-AS1-226ENST00000610018 672 ntTSL 5 BASIC6.24□□□□□ -1.41
COL5A3P25940 LDHA-225ENST00000625635 141 ntTSL 5 BASIC6.24□□□□□ -1.41
COL5A3P25940 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.24□□□□□ -1.41
COL5A3P25940 CHRM3-AS2-201ENST00000427859 2431 ntTSL 1 (best) BASIC6.24□□□□□ -1.41
COL5A3P25940 PCDH15-230ENST00000617051 7048 ntTSL 5 BASIC6.24□□□□□ -1.41
COL5A3P25940 NBPF26-202ENST00000611287 2701 ntTSL 5 BASIC6.24□□□□□ -1.41
COL5A3P25940 NBPF14-211ENST00000621070 2701 ntTSL 5 BASIC6.24□□□□□ -1.41
COL5A3P25940 AC007491.1-202ENST00000637961 1576 ntTSL 5 BASIC6.23□□□□□ -1.41
COL5A3P25940 INHBA-AS1-203ENST00000422822 2312 ntTSL 2 BASIC6.23□□□□□ -1.41
COL5A3P25940 APOOL-203ENST00000622540 6466 ntTSL 5 BASIC6.23□□□□□ -1.41
COL5A3P25940 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL5A3P25940 ZMYM2-210ENST00000610343 10200 ntAPPRIS P1 TSL 1 (best) BASIC6.23□□□□□ -1.41
COL5A3P25940 DLG2-211ENST00000426717 5927 ntTSL 1 (best) BASIC6.23□□□□□ -1.41
COL5A3P25940 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC6.23□□□□□ -1.41
COL5A3P25940 SMG1P6-201ENST00000532337 2930 ntBASIC6.23□□□□□ -1.41
Retrieved 100 of 98,524 protein–RNA pairs in 95.5 ms