Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 EIF4A2P5-201ENST00000529914 499 ntBASIC4.59□□□□□ -1.67
USF1P22415 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC4.59□□□□□ -1.67
USF1P22415 AC137627.1-201ENST00000545761 289 ntBASIC4.59□□□□□ -1.67
USF1P22415 AC139697.1-201ENST00000548429 745 ntBASIC4.59□□□□□ -1.67
USF1P22415 MTND2P17-201ENST00000550281 688 ntBASIC4.59□□□□□ -1.67
USF1P22415 AC039056.1-201ENST00000552704 467 ntTSL 3 BASIC4.59□□□□□ -1.67
USF1P22415 ZNF971P-202ENST00000568619 461 ntTSL 3 BASIC4.59□□□□□ -1.67
USF1P22415 MIR4646-201ENST00000580775 63 ntBASIC4.59□□□□□ -1.67
USF1P22415 AC011493.1-201ENST00000596753 1632 ntBASIC4.59□□□□□ -1.67
USF1P22415 AL136164.2-201ENST00000602823 732 ntTSL 5 BASIC4.59□□□□□ -1.67
USF1P22415 AC138035.1-202ENST00000604669 683 ntTSL 1 (best) BASIC4.59□□□□□ -1.67
USF1P22415 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC4.59□□□□□ -1.67
USF1P22415 PACRG-210ENST00000611387 279 ntTSL 5 BASIC4.59□□□□□ -1.67
USF1P22415 PHF7-211ENST00000615126 1328 ntTSL 5 BASIC4.59□□□□□ -1.67
USF1P22415 AL078621.3-201ENST00000623707 2042 ntBASIC4.59□□□□□ -1.67
USF1P22415 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC4.59□□□□□ -1.67
USF1P22415 ABCA13-204ENST00000435803 17184 ntAPPRIS P2 TSL 1 (best) BASIC4.59□□□□□ -1.67
USF1P22415 ZNF492-201ENST00000456783 4245 ntAPPRIS P1 TSL 1 (best) BASIC4.59□□□□□ -1.68
USF1P22415 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC4.59□□□□□ -1.68
USF1P22415 AC112255.1-201ENST00000624070 2493 ntBASIC4.58□□□□□ -1.68
USF1P22415 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC4.58□□□□□ -1.68
USF1P22415 TANK-205ENST00000405852 2155 ntTSL 5 BASIC4.58□□□□□ -1.68
USF1P22415 OR4F13P-202ENST00000560066 2054 ntBASIC4.58□□□□□ -1.68
USF1P22415 MYBPC1-208ENST00000547405 3834 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
USF1P22415 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC4.58□□□□□ -1.68
USF1P22415 CLIP1-AS1-201ENST00000535976 1745 ntTSL 3 BASIC4.58□□□□□ -1.68
USF1P22415 AP001029.2-203ENST00000589795 4910 ntBASIC4.58□□□□□ -1.68
USF1P22415 SAMMSON-213ENST00000641336 1521 ntBASIC4.58□□□□□ -1.68
USF1P22415 PHLDB2-214ENST00000495180 4159 ntTSL 2 BASIC4.58□□□□□ -1.68
USF1P22415 MDM2-201ENST00000258148 1361 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
USF1P22415 OR14A16-201ENST00000357627 930 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
USF1P22415 AL121886.1-201ENST00000358609 435 ntBASIC4.58□□□□□ -1.68
USF1P22415 RNA5SP305-201ENST00000362665 119 ntBASIC4.58□□□□□ -1.68
USF1P22415 SSX3-202ENST00000376893 800 ntTSL 2 BASIC4.58□□□□□ -1.68
USF1P22415 AL589647.1-201ENST00000402485 466 ntBASIC4.58□□□□□ -1.68
USF1P22415 SETP15-201ENST00000412724 337 ntBASIC4.58□□□□□ -1.68
USF1P22415 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
USF1P22415 AC093655.2-201ENST00000425735 631 ntBASIC4.58□□□□□ -1.68
USF1P22415 VN1R54P-201ENST00000435210 1049 ntBASIC4.58□□□□□ -1.68
USF1P22415 MED28P3-201ENST00000444288 531 ntBASIC4.58□□□□□ -1.68
USF1P22415 AC114877.1-201ENST00000446601 582 ntTSL 4 BASIC4.58□□□□□ -1.68
USF1P22415 AC018742.1-202ENST00000457901 504 ntTSL 3 BASIC4.58□□□□□ -1.68
USF1P22415 AC109462.1-201ENST00000491087 368 ntBASIC4.58□□□□□ -1.68
USF1P22415 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC4.58□□□□□ -1.68
USF1P22415 SNRPCP2-201ENST00000504370 475 ntBASIC4.58□□□□□ -1.68
USF1P22415 LINC02502-201ENST00000505122 642 ntTSL 4 BASIC4.58□□□□□ -1.68
USF1P22415 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC4.58□□□□□ -1.68
USF1P22415 AC010395.1-201ENST00000507627 697 ntTSL 5 BASIC4.58□□□□□ -1.68
USF1P22415 AC010445.1-201ENST00000507674 440 ntTSL 5 BASIC4.58□□□□□ -1.68
USF1P22415 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC4.58□□□□□ -1.68
USF1P22415 CDH12P4-201ENST00000517835 295 ntBASIC4.58□□□□□ -1.68
USF1P22415 CDH12P3-201ENST00000517935 295 ntBASIC4.58□□□□□ -1.68
USF1P22415 AP003354.2-201ENST00000517983 563 ntTSL 4 BASIC4.58□□□□□ -1.68
USF1P22415 CDH12P1-201ENST00000518435 295 ntBASIC4.58□□□□□ -1.68
USF1P22415 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC4.58□□□□□ -1.68
USF1P22415 AP000676.2-201ENST00000529711 301 ntBASIC4.58□□□□□ -1.68
USF1P22415 ASB8-202ENST00000535055 657 ntTSL 2 BASIC4.58□□□□□ -1.68
USF1P22415 LINC00944-202ENST00000540684 888 ntTSL 1 (best) BASIC4.58□□□□□ -1.68
USF1P22415 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC4.58□□□□□ -1.68
USF1P22415 DPRXP4-201ENST00000578053 568 ntBASIC4.58□□□□□ -1.68
USF1P22415 MIR7515HG-254ENST00000593269 943 ntTSL 5 BASIC4.58□□□□□ -1.68
USF1P22415 AP002884.5-201ENST00000595053 1132 ntBASIC4.58□□□□□ -1.68
USF1P22415 AC010320.2-203ENST00000601745 574 ntTSL 4 BASIC4.58□□□□□ -1.68
USF1P22415 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC4.58□□□□□ -1.68
USF1P22415 Mico1.1-201ENST00000611698 204 ntBASIC4.58□□□□□ -1.68
USF1P22415 AC022960.2-201ENST00000616300 666 ntBASIC4.58□□□□□ -1.68
USF1P22415 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC4.58□□□□□ -1.68
USF1P22415 OR52B4-201ENST00000624801 1124 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
USF1P22415 AJ009632.2-203ENST00000634708 1205 ntTSL 5 BASIC4.58□□□□□ -1.68
USF1P22415 GVQW2-203ENST00000641401 327 ntAPPRIS P1 BASIC4.58□□□□□ -1.68
USF1P22415 CLDN12-203ENST00000394605 3488 ntAPPRIS P1 TSL 2 BASIC4.58□□□□□ -1.68
USF1P22415 DNA2-201ENST00000358410 4208 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
USF1P22415 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC4.58□□□□□ -1.68
USF1P22415 PTPRO-204ENST00000445537 4062 ntAPPRIS ALT2 TSL 2 BASIC4.58□□□□□ -1.68
USF1P22415 ADAMDEC1-204ENST00000522298 2044 ntAPPRIS ALT2 TSL 2 BASIC4.58□□□□□ -1.68
USF1P22415 HSPA8P18-201ENST00000439846 1928 ntBASIC4.58□□□□□ -1.68
USF1P22415 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC4.58□□□□□ -1.68
USF1P22415 A1CF-205ENST00000374001 9221 ntAPPRIS ALT1 TSL 5 BASIC4.57□□□□□ -1.68
USF1P22415 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
USF1P22415 ANKRD34C-201ENST00000421388 4951 ntAPPRIS P1 BASIC4.57□□□□□ -1.68
USF1P22415 MAP2-202ENST00000360351 9711 ntAPPRIS P2 TSL 5 BASIC4.57□□□□□ -1.68
USF1P22415 MAPK10-328ENST00000641553 4009 ntBASIC4.57□□□□□ -1.68
USF1P22415 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC4.57□□□□□ -1.68
USF1P22415 SLC26A7-208ENST00000523719 2902 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
USF1P22415 ADCY10-201ENST00000367848 5055 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
USF1P22415 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC4.57□□□□□ -1.68
USF1P22415 ATP2C1-210ENST00000505330 4888 ntAPPRIS ALT2 TSL 2 BASIC4.57□□□□□ -1.68
USF1P22415 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
USF1P22415 MIR133B-201ENST00000362210 119 ntBASIC4.57□□□□□ -1.68
USF1P22415 FABP7-202ENST00000368444 1026 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
USF1P22415 USMG5-203ENST00000369811 635 ntAPPRIS P1 TSL 2 BASIC4.57□□□□□ -1.68
USF1P22415 DEFB135-201ENST00000382208 234 ntAPPRIS P1 TSL 1 (best) BASIC4.57□□□□□ -1.68
USF1P22415 RNU1-149P-201ENST00000390870 161 ntBASIC4.57□□□□□ -1.68
USF1P22415 AC003035.1-201ENST00000391359 544 ntTSL 3 BASIC4.57□□□□□ -1.68
USF1P22415 AC092675.1-201ENST00000409490 561 ntTSL 4 BASIC4.57□□□□□ -1.68
USF1P22415 RNA5SP296-201ENST00000410523 111 ntBASIC4.57□□□□□ -1.68
USF1P22415 RPL37P18-201ENST00000411602 243 ntBASIC4.57□□□□□ -1.68
USF1P22415 AC096669.1-202ENST00000413708 616 ntTSL 2 BASIC4.57□□□□□ -1.68
USF1P22415 AL139128.1-201ENST00000413921 941 ntBASIC4.57□□□□□ -1.68
USF1P22415 AC079809.1-201ENST00000415468 276 ntBASIC4.57□□□□□ -1.68
Retrieved 100 of 98,524 protein–RNA pairs in 85.2 ms