Protein–RNA interactions for Protein: Q9ULL8

SHROOM4, Protein Shroom4, humanhuman

Predictions only

Length 1,493 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM4Q9ULL8 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 TMEM200A-202ENST00000392429 5017 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 FOXP2-217ENST00000462331 1388 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 NHS-202ENST00000398097 8213 ntTSL 1 (best) BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 GABRA2-205ENST00000507069 1562 ntTSL 3 BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 NRG3-202ENST00000372142 3136 ntAPPRIS ALT2 TSL 1 (best) BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 LGI1-219ENST00000636155 1618 ntTSL 5 BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 AJ009632.2-208ENST00000635525 4123 ntTSL 5 BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 AASDH-201ENST00000205214 3590 ntAPPRIS P1 TSL 1 (best) BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 DTNA-207ENST00000444659 6343 ntAPPRIS ALT2 TSL 5 BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 RPS3AP23-201ENST00000401762 784 ntBASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 AL157938.2-207ENST00000415391 884 ntTSL 2 BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 AL590723.1-201ENST00000426030 629 ntTSL 5 BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 HSPD1P12-201ENST00000429127 1069 ntBASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 RPL5P25-201ENST00000441148 775 ntBASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 RNU6-1334P-201ENST00000516032 105 ntBASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 LINC02422-201ENST00000535163 852 ntTSL 3 BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 TEX41-238ENST00000604253 709 ntTSL 5 BASIC9.98□□□□□ -0.81
SHROOM4Q9ULL8 IFIT1-201ENST00000371804 1880 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
SHROOM4Q9ULL8 AC092378.1-202ENST00000500117 2296 ntTSL 2 BASIC9.97□□□□□ -0.81
SHROOM4Q9ULL8 ZBTB44-210ENST00000530205 2179 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
SHROOM4Q9ULL8 GABRB2-201ENST00000274547 7409 ntTSL 5 BASIC9.97□□□□□ -0.81
SHROOM4Q9ULL8 LINC00616-205ENST00000514600 2017 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
SHROOM4Q9ULL8 OR10G4-203ENST00000641722 3301 ntAPPRIS P1 BASIC9.97□□□□□ -0.81
SHROOM4Q9ULL8 AC004784.1-201ENST00000635495 1833 ntTSL 5 BASIC9.97□□□□□ -0.81
SHROOM4Q9ULL8 VPS35-201ENST00000299138 6790 ntAPPRIS P1 TSL 1 (best) BASIC9.97□□□□□ -0.81
SHROOM4Q9ULL8 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
SHROOM4Q9ULL8 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
SHROOM4Q9ULL8 BBIP1-207ENST00000448814 2119 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
SHROOM4Q9ULL8 CCL20-201ENST00000358813 800 ntAPPRIS P3 TSL 1 (best) BASIC9.97□□□□□ -0.81
SHROOM4Q9ULL8 TRAV25-201ENST00000390454 403 ntAPPRIS P1 BASIC9.97□□□□□ -0.81
SHROOM4Q9ULL8 DNAJA1P3-201ENST00000399417 1194 ntBASIC9.97□□□□□ -0.81
SHROOM4Q9ULL8 PPIAP9-201ENST00000403866 498 ntBASIC9.97□□□□□ -0.81
SHROOM4Q9ULL8 RPS27AP7-201ENST00000422792 455 ntBASIC9.97□□□□□ -0.81
SHROOM4Q9ULL8 AL356859.1-201ENST00000449180 414 ntTSL 5 BASIC9.97□□□□□ -0.81
SHROOM4Q9ULL8 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC9.97□□□□□ -0.81
SHROOM4Q9ULL8 SNORD116-30-201ENST00000516468 85 ntBASIC9.97□□□□□ -0.81
SHROOM4Q9ULL8 SCARNA20.4-201ENST00000516969 131 ntBASIC9.97□□□□□ -0.81
SHROOM4Q9ULL8 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC9.97□□□□□ -0.81
SHROOM4Q9ULL8 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC9.97□□□□□ -0.81
SHROOM4Q9ULL8 MIR3160-1-201ENST00000577972 85 ntBASIC9.97□□□□□ -0.81
SHROOM4Q9ULL8 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC9.97□□□□□ -0.81
SHROOM4Q9ULL8 CHD2-202ENST00000420239 2221 ntTSL 1 (best) BASIC9.97□□□□□ -0.81
SHROOM4Q9ULL8 AKAP7-209ENST00000541650 2008 ntTSL 5 BASIC9.97□□□□□ -0.81
SHROOM4Q9ULL8 AC127164.1-201ENST00000548738 4196 ntTSL 2 BASIC9.97□□□□□ -0.81
SHROOM4Q9ULL8 OR10A6-203ENST00000641238 6052 ntAPPRIS P1 BASIC9.96□□□□□ -0.81
SHROOM4Q9ULL8 MEPE-202ENST00000395102 2123 ntAPPRIS ALT2 TSL 5 BASIC9.96□□□□□ -0.81
SHROOM4Q9ULL8 AC092747.4-201ENST00000620519 1861 ntBASIC9.96□□□□□ -0.81
SHROOM4Q9ULL8 LINC02203-203ENST00000625989 1600 ntTSL 1 (best) BASIC9.96□□□□□ -0.81
SHROOM4Q9ULL8 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC9.96□□□□□ -0.81
SHROOM4Q9ULL8 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC9.96□□□□□ -0.81
SHROOM4Q9ULL8 ASCC1-203ENST00000342444 2270 ntTSL 2 BASIC9.96□□□□□ -0.81
SHROOM4Q9ULL8 ZNF534-202ENST00000332323 2086 ntAPPRIS P4 TSL 1 (best) BASIC9.96□□□□□ -0.82
SHROOM4Q9ULL8 AC100757.1-201ENST00000616872 1835 ntBASIC9.96□□□□□ -0.82
SHROOM4Q9ULL8 GAPDHP15-201ENST00000398586 975 ntBASIC9.96□□□□□ -0.82
SHROOM4Q9ULL8 RNA5SP113-201ENST00000410486 84 ntBASIC9.96□□□□□ -0.82
SHROOM4Q9ULL8 CFLAR-AS1-201ENST00000415011 1072 ntTSL 1 (best) BASIC9.96□□□□□ -0.82
SHROOM4Q9ULL8 DPYD-IT1-201ENST00000424982 401 ntTSL 3 BASIC9.96□□□□□ -0.82
SHROOM4Q9ULL8 AC007559.1-201ENST00000428736 355 ntBASIC9.96□□□□□ -0.82
SHROOM4Q9ULL8 H3F3BP1-201ENST00000440551 403 ntBASIC9.96□□□□□ -0.82
SHROOM4Q9ULL8 SNORD125-201ENST00000459538 96 ntBASIC9.96□□□□□ -0.82
SHROOM4Q9ULL8 BTBD11-206ENST00000494235 811 ntTSL 2 BASIC9.96□□□□□ -0.82
SHROOM4Q9ULL8 BTF3P13-201ENST00000513224 490 ntBASIC9.96□□□□□ -0.82
SHROOM4Q9ULL8 TRAV30-201ENST00000557168 337 ntAPPRIS P1 BASIC9.96□□□□□ -0.82
SHROOM4Q9ULL8 MEMO1P5-201ENST00000604810 406 ntBASIC9.96□□□□□ -0.82
SHROOM4Q9ULL8 AC015574.1-205ENST00000611285 524 ntTSL 5 BASIC9.96□□□□□ -0.82
SHROOM4Q9ULL8 AL392048.1-201ENST00000613946 534 ntBASIC9.96□□□□□ -0.82
SHROOM4Q9ULL8 CPNE4-214ENST00000617767 3556 ntTSL 2 BASIC9.96□□□□□ -0.82
SHROOM4Q9ULL8 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC9.96□□□□□ -0.82
SHROOM4Q9ULL8 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC9.95□□□□□ -0.82
SHROOM4Q9ULL8 RORA-203ENST00000335670 10844 ntAPPRIS P3 TSL 1 (best) BASIC9.95□□□□□ -0.82
SHROOM4Q9ULL8 RPE65-201ENST00000262340 2610 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
SHROOM4Q9ULL8 MR1-209ENST00000617803 7584 ntTSL 5 BASIC9.95□□□□□ -0.82
SHROOM4Q9ULL8 KDM4C-214ENST00000536108 3406 ntTSL 1 (best) BASIC9.95□□□□□ -0.82
SHROOM4Q9ULL8 MTERF1-202ENST00000406735 1639 ntAPPRIS ALT2 TSL 2 BASIC9.95□□□□□ -0.82
SHROOM4Q9ULL8 RPL32P3-201ENST00000359025 275 ntBASIC9.95□□□□□ -0.82
SHROOM4Q9ULL8 CYP2AC1P-201ENST00000407830 1173 ntBASIC9.95□□□□□ -0.82
SHROOM4Q9ULL8 CHEK2P3-201ENST00000416118 248 ntBASIC9.95□□□□□ -0.82
SHROOM4Q9ULL8 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC9.95□□□□□ -0.82
SHROOM4Q9ULL8 LINC02210-201ENST00000444561 288 ntBASIC9.95□□□□□ -0.82
SHROOM4Q9ULL8 AC135999.1-201ENST00000478962 479 ntBASIC9.95□□□□□ -0.82
SHROOM4Q9ULL8 AC113398.2-201ENST00000507630 558 ntBASIC9.95□□□□□ -0.82
SHROOM4Q9ULL8 AC097491.1-201ENST00000507857 672 ntTSL 5 BASIC9.95□□□□□ -0.82
SHROOM4Q9ULL8 AC091912.1-201ENST00000511351 248 ntBASIC9.95□□□□□ -0.82
SHROOM4Q9ULL8 MGAT4C-206ENST00000552435 550 ntTSL 4 BASIC9.95□□□□□ -0.82
SHROOM4Q9ULL8 AC007599.2-201ENST00000573040 493 ntTSL 5 BASIC9.95□□□□□ -0.82
SHROOM4Q9ULL8 AC011473.2-201ENST00000596286 240 ntTSL 3 BASIC9.95□□□□□ -0.82
SHROOM4Q9ULL8 AC108738.1-201ENST00000603703 237 ntBASIC9.95□□□□□ -0.82
SHROOM4Q9ULL8 AC011453.2-201ENST00000603737 729 ntBASIC9.95□□□□□ -0.82
SHROOM4Q9ULL8 XIAP-205ENST00000434753 8415 ntAPPRIS P1 TSL 1 (best) BASIC9.95□□□□□ -0.82
SHROOM4Q9ULL8 Z95114.1-201ENST00000624264 14574 ntBASIC9.95□□□□□ -0.82
SHROOM4Q9ULL8 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC9.95□□□□□ -0.82
SHROOM4Q9ULL8 CDH13-209ENST00000567109 8042 ntAPPRIS ALT2 TSL 1 (best) BASIC9.94□□□□□ -0.82
SHROOM4Q9ULL8 AP002530.1-201ENST00000405705 684 ntBASIC9.94□□□□□ -0.82
SHROOM4Q9ULL8 AC066595.1-201ENST00000426697 399 ntTSL 3 BASIC9.94□□□□□ -0.82
Retrieved 100 of 98,524 protein–RNA pairs in 86.1 ms