Protein–RNA interactions for Protein: Q9UFE4

CCDC39, Coiled-coil domain-containing protein 39, humanhuman

Predictions only

Length 941 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39Q9UFE4 LINC02378-201ENST00000540399 1003 ntTSL 5 BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 LINC00687-203ENST00000558175 696 ntTSL 3 BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 MIR9-3HG-211ENST00000561037 779 ntTSL 5 BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 LINC02170-201ENST00000561519 555 ntTSL 4 BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 AC136619.2-201ENST00000563361 631 ntBASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 AC023813.2-201ENST00000564321 469 ntBASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 AC090371.2-205ENST00000580366 490 ntTSL 3 BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 AC022069.1-201ENST00000582910 658 ntBASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 LINC02112-203ENST00000606169 419 ntTSL 5 BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 AL021707.7-201ENST00000607991 416 ntBASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 Xist_exon4.1-201ENST00000615964 126 ntBASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 MIR1264-201ENST00000616374 69 ntBASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 AC069234.4-201ENST00000621276 412 ntBASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 AC079248.2-201ENST00000623779 326 ntBASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 CLUHP10-201ENST00000631979 980 ntBASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 LINC02495-203ENST00000636704 242 ntBASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 AC125238.2-201ENST00000430003 1440 ntBASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 LINC01422-201ENST00000434868 6043 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 HAVCR1-204ENST00000522693 1713 ntAPPRIS ALT2 TSL 2 BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 LMOD3-201ENST00000420581 4086 ntAPPRIS P1 TSL 1 (best) BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 MTTP-203ENST00000457717 4092 ntAPPRIS P1 TSL 5 BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 ATP8B5P-203ENST00000430846 3962 ntTSL 2 BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 OR12D2-207ENST00000642051 1496 ntAPPRIS P1 BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 TEX11-202ENST00000374320 2224 ntTSL 2 BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 FCHSD2-208ENST00000458644 2215 ntTSL 2 BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 LINC02141-201ENST00000568279 6586 ntTSL 1 (best) BASIC7.23□□□□□ -1.25
CCDC39Q9UFE4 CUBN-202ENST00000377833 11949 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 PCA3-201ENST00000412654 3922 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 MSL2-202ENST00000434835 2272 ntTSL 2 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 ZNF253-203ENST00000589717 3519 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 RALGAPA2-201ENST00000202677 6152 ntAPPRIS P1 TSL 5 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 CLRN1-AS1-201ENST00000465576 2045 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 TRIM22-201ENST00000379965 2989 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AC022164.1-201ENST00000568767 2673 ntBASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 CENPN-203ENST00000393335 1556 ntTSL 2 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 CASC19-238ENST00000641523 1558 ntBASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 OR6C2-201ENST00000322678 939 ntAPPRIS P1 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 UQCR10-201ENST00000330029 916 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 SNORD16-201ENST00000362803 99 ntBASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AL590084.2-201ENST00000401481 382 ntBASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AL121977.1-201ENST00000401636 979 ntBASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 KCNJ13-203ENST00000410029 1177 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 RN7SKP221-201ENST00000410420 301 ntBASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 LINC00342-201ENST00000412393 654 ntTSL 3 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 SLC8A1-AS1-201ENST00000413479 800 ntTSL 5 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AL354868.1-201ENST00000417077 482 ntBASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AK4P4-201ENST00000419465 646 ntBASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AC096669.1-201ENST00000422203 648 ntTSL 5 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 OR5W1P-201ENST00000423705 938 ntBASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AL157884.1-201ENST00000424561 454 ntBASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 BBS9-205ENST00000425508 1252 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AL022331.1-201ENST00000429025 477 ntBASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AL592146.1-201ENST00000433869 1126 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 ATP5J2-205ENST00000449683 460 ntTSL 3 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AC097262.1-201ENST00000452559 548 ntBASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AL034369.1-201ENST00000453808 477 ntBASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 RPL7L1P3-201ENST00000455249 689 ntBASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 LINC01072-201ENST00000455848 431 ntTSL 3 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 KCNIP2-211ENST00000461105 858 ntTSL 1 (best) BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AP003385.3-201ENST00000472498 287 ntBASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AC011825.1-201ENST00000484967 388 ntBASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 RAB7A-205ENST00000485280 507 ntTSL 3 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 PLS1-AS1-201ENST00000485338 346 ntTSL 3 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AC010374.1-201ENST00000503762 1237 ntBASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AC021151.1-201ENST00000506933 183 ntTSL 3 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AC010261.2-201ENST00000515563 588 ntTSL 2 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AC104248.1-201ENST00000522244 481 ntTSL 3 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 MAL2-207ENST00000522828 603 ntTSL 3 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AP002336.3-201ENST00000526017 367 ntTSL 3 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 OR9G2P-201ENST00000533326 880 ntBASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 EBF2-204ENST00000535548 1017 ntTSL 2 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 TMEM116-208ENST00000549537 1229 ntAPPRIS ALT2 TSL 2 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 PDCD6IPP2-207ENST00000566321 1069 ntBASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 TMEM202-202ENST00000567679 588 ntAPPRIS ALT2 TSL 2 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AC012593.1-208ENST00000587791 696 ntTSL 5 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AC107993.1-201ENST00000591343 684 ntBASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AC092683.1-203ENST00000594050 654 ntTSL 5 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 ZNF66-203ENST00000594534 757 ntTSL 5 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 VN1R83P-201ENST00000595685 445 ntBASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AL035411.2-201ENST00000604022 421 ntBASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 LINC00635-219ENST00000608506 482 ntTSL 5 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AC092954.2-201ENST00000609103 430 ntBASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AL450489.1-201ENST00000612071 468 ntBASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AL158063.1-201ENST00000615349 536 ntBASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AC159540.2-206ENST00000619371 355 ntTSL 3 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 CYLC1-202ENST00000621735 379 ntAPPRIS ALT2 TSL 3 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 PDCD6IPP1-202ENST00000622242 1064 ntBASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 MIR6503-201ENST00000622884 86 ntBASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AC007490.1-201ENST00000624321 703 ntBASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 AC005154.1-203ENST00000626245 451 ntTSL 5 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 UGP2-231ENST00000627474 264 ntTSL 5 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 TEX41-279ENST00000629149 609 ntTSL 5 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 SETD2-202ENST00000409792 8142 ntAPPRIS P1 TSL 5 BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 PIK3C2A-201ENST00000265970 8227 ntAPPRIS P1 TSL 1 (best) BASIC7.22□□□□□ -1.25
CCDC39Q9UFE4 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC7.22□□□□□ -1.25
Retrieved 100 of 98,524 protein–RNA pairs in 76.3 ms