Protein–RNA interactions for Protein: Q9HD45

TM9SF3, Transmembrane 9 superfamily member 3, humanhuman

Predictions only

Length 589 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TM9SF3Q9HD45 TEX41-210ENST00000451774 2098 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
TM9SF3Q9HD45 ABCA10-201ENST00000269081 6362 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
TM9SF3Q9HD45 MKKS-202ENST00000399054 2663 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
TM9SF3Q9HD45 KIN-201ENST00000379562 6348 ntAPPRIS P1 TSL 1 (best) BASIC5.47□□□□□ -1.53
TM9SF3Q9HD45 FAM26D-202ENST00000368597 1311 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
TM9SF3Q9HD45 AC090510.1-202ENST00000500850 2017 ntTSL 1 (best) BASIC5.47□□□□□ -1.53
TM9SF3Q9HD45 MT-RNR2-201ENST00000387347 1559 ntBASIC5.46□□□□□ -1.53
TM9SF3Q9HD45 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.46□□□□□ -1.53
TM9SF3Q9HD45 NSD1-204ENST00000439151 12892 ntAPPRIS P1 TSL 1 (best) BASIC5.46□□□□□ -1.53
TM9SF3Q9HD45 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.46□□□□□ -1.53
TM9SF3Q9HD45 NELL2-201ENST00000333837 2943 ntTSL 2 BASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 XRN1-201ENST00000264951 10143 ntAPPRIS P3 TSL 1 (best) BASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 AC011493.1-201ENST00000596753 1632 ntBASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 CACNB4-243ENST00000637217 8188 ntTSL 5 BASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 SNORA67-201ENST00000384423 137 ntBASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 OR51A6P-201ENST00000418680 1004 ntBASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 AC022535.1-201ENST00000420082 691 ntTSL 3 BASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 RNGTTP1-201ENST00000420965 728 ntBASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 USP12-AS1-201ENST00000440657 268 ntTSL 5 BASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 AL049552.1-201ENST00000444302 577 ntTSL 2 BASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 MTND6P32-201ENST00000457611 483 ntBASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 AC007003.1-201ENST00000472463 736 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 AC008592.2-201ENST00000506070 571 ntTSL 3 BASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 AC024132.2-201ENST00000506878 482 ntTSL 3 BASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 GAPDHP62-201ENST00000515313 990 ntBASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 RNA5SP230-201ENST00000517039 122 ntBASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 HMMR-AS1-202ENST00000521666 800 ntTSL 2 BASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 UQCRB-209ENST00000523920 695 ntTSL 5 BASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 HMGB1P40-201ENST00000525121 540 ntBASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 TAS2R46-201ENST00000533467 930 ntAPPRIS P1 BASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 OR11J2P-201ENST00000555298 907 ntBASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 RBM22P1-201ENST00000578589 1214 ntBASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 AC092316.1-201ENST00000598703 297 ntTSL 5 BASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 HIRAP1-201ENST00000605318 787 ntBASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 Mico1.1-201ENST00000611698 204 ntBASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 AC007786.3-201ENST00000615154 596 ntBASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 AL121890.2-201ENST00000617644 465 ntBASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 AP001005.3-201ENST00000622049 129 ntBASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 RFC1-217ENST00000639695 867 ntTSL 5 BASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 HACD3-209ENST00000566511 1782 ntTSL 5 BASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 AC239809.3-214ENST00000496508 2513 ntTSL 2 BASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 TCP11-207ENST00000418521 1575 ntAPPRIS ALT2 TSL 5 BASIC5.46□□□□□ -1.54
TM9SF3Q9HD45 C12orf50-201ENST00000298699 1722 ntAPPRIS P1 TSL 2 BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 PTPRB-202ENST00000334414 12316 ntAPPRIS P4 TSL 1 (best) BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 KCNC4-201ENST00000369787 18750 ntAPPRIS P3 TSL 1 (best) BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 PEX26-201ENST00000329627 18445 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 FNIP1-202ENST00000307968 6388 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 OR2J2-202ENST00000377167 1272 ntAPPRIS P1 BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 SNORA16A-201ENST00000384342 137 ntBASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 MIR550A3-201ENST00000390735 95 ntBASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 AL645733.1-201ENST00000402250 217 ntBASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 AC096644.3-201ENST00000416788 338 ntBASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 AL121878.1-201ENST00000418638 859 ntBASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 AL590762.4-201ENST00000425885 253 ntBASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 AL591623.2-201ENST00000449978 222 ntBASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 SLC9A9-AS1-201ENST00000479030 518 ntTSL 5 BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 SETSIP-201ENST00000485873 879 ntAPPRIS ALT2 BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 AC012629.1-201ENST00000503953 342 ntTSL 3 BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 AC097515.1-202ENST00000511818 371 ntTSL 3 BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 AP001267.3-204ENST00000528578 423 ntTSL 3 BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 LINC01493-201ENST00000530102 460 ntTSL 5 BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 AC087636.1-201ENST00000554787 573 ntTSL 4 BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 AL359219.2-201ENST00000555184 348 ntBASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 AF107885.2-202ENST00000557653 448 ntTSL 5 BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 AC020659.1-204ENST00000562920 400 ntTSL 3 BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 AC106730.2-201ENST00000566641 540 ntBASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 DHFRP1-201ENST00000579682 559 ntBASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 AC016747.2-201ENST00000605902 364 ntTSL 2 BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 SNHG5-214ENST00000623001 598 ntTSL 2 BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 AP001029.2-203ENST00000589795 4910 ntBASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 AC011933.2-201ENST00000578539 2790 ntBASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 RBPJP2-201ENST00000618187 1444 ntBASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 SOCS5P3-201ENST00000425115 1576 ntBASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 LINC01553-203ENST00000521074 4329 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 KSR2-202ENST00000425217 17008 ntTSL 5 BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 FOXP2-205ENST00000393489 2285 ntTSL 1 (best) BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 AL022311.1-201ENST00000623726 19416 ntBASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 PDE7A-201ENST00000379419 2425 ntAPPRIS P3 TSL 2 BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 RAPH1-207ENST00000423104 1860 ntAPPRIS ALT2 TSL 5 BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC5.45□□□□□ -1.54
TM9SF3Q9HD45 FAM72A-201ENST00000341209 1774 ntTSL 1 (best) BASIC5.44□□□□□ -1.54
Retrieved 100 of 98,524 protein–RNA pairs in 95.7 ms