Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
PCDH9Q9HC56 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PCDH9Q9HC56 SEC31A-217ENST00000505984 3596 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PCDH9Q9HC56 SLC26A7-201ENST00000276609 5263 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PCDH9Q9HC56 CA1-225ENST00000626824 2405 ntTSL 5 BASIC5.57□□□□□ -1.52
PCDH9Q9HC56 AL513548.1-201ENST00000562904 1724 ntBASIC5.57□□□□□ -1.52
PCDH9Q9HC56 SCN1A-209ENST00000635750 8299 ntAPPRIS P3 TSL 5 BASIC5.57□□□□□ -1.52
PCDH9Q9HC56 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PCDH9Q9HC56 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.57□□□□□ -1.52
PCDH9Q9HC56 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PCDH9Q9HC56 FNIP1-201ENST00000307954 6366 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PCDH9Q9HC56 CEPT1-211ENST00000615636 1966 ntTSL 5 BASIC5.57□□□□□ -1.52
PCDH9Q9HC56 ARHGAP24-201ENST00000264343 4572 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PCDH9Q9HC56 AC079298.1-201ENST00000625026 1619 ntBASIC5.57□□□□□ -1.52
PCDH9Q9HC56 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.57□□□□□ -1.52
PCDH9Q9HC56 RNU6-618P-201ENST00000363518 112 ntBASIC5.57□□□□□ -1.52
PCDH9Q9HC56 RNU6-152P-201ENST00000384037 107 ntBASIC5.57□□□□□ -1.52
PCDH9Q9HC56 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC5.57□□□□□ -1.52
PCDH9Q9HC56 LINC00458-201ENST00000423442 1060 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PCDH9Q9HC56 AC003685.1-201ENST00000440430 466 ntTSL 2 BASIC5.57□□□□□ -1.52
PCDH9Q9HC56 AL606490.8-201ENST00000441624 319 ntBASIC5.57□□□□□ -1.52
PCDH9Q9HC56 RPS15AP29-201ENST00000445539 400 ntBASIC5.57□□□□□ -1.52
PCDH9Q9HC56 MORF4L1P4-201ENST00000450245 976 ntBASIC5.57□□□□□ -1.52
PCDH9Q9HC56 GAPDHP14-201ENST00000450472 937 ntBASIC5.57□□□□□ -1.52
PCDH9Q9HC56 PRPF38AP1-201ENST00000451976 933 ntBASIC5.57□□□□□ -1.52
PCDH9Q9HC56 AC023141.9-201ENST00000458734 412 ntBASIC5.57□□□□□ -1.52
PCDH9Q9HC56 AL049874.2-201ENST00000492636 288 ntBASIC5.57□□□□□ -1.52
PCDH9Q9HC56 SSX6-203ENST00000509958 336 ntTSL 3 BASIC5.57□□□□□ -1.52
PCDH9Q9HC56 EIF3KP3-201ENST00000514461 639 ntBASIC5.57□□□□□ -1.52
PCDH9Q9HC56 IGLVIV-64-201ENST00000518581 301 ntBASIC5.57□□□□□ -1.52
PCDH9Q9HC56 IGKV3D-34-201ENST00000522638 302 ntBASIC5.57□□□□□ -1.52
PCDH9Q9HC56 AP003501.1-201ENST00000524453 744 ntTSL 3 BASIC5.57□□□□□ -1.52
PCDH9Q9HC56 AC021393.1-201ENST00000531077 433 ntTSL 3 BASIC5.57□□□□□ -1.52
PCDH9Q9HC56 AC027369.5-201ENST00000533838 755 ntBASIC5.57□□□□□ -1.52
PCDH9Q9HC56 TRDN-205ENST00000546248 1179 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PCDH9Q9HC56 AC122134.1-202ENST00000569111 1201 ntBASIC5.57□□□□□ -1.52
PCDH9Q9HC56 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.57□□□□□ -1.52
PCDH9Q9HC56 AC104984.2-201ENST00000582938 385 ntTSL 3 BASIC5.57□□□□□ -1.52
PCDH9Q9HC56 PRPF19P1-201ENST00000584766 898 ntBASIC5.57□□□□□ -1.52
PCDH9Q9HC56 AL118522.2-201ENST00000616045 615 ntBASIC5.57□□□□□ -1.52
PCDH9Q9HC56 HOTTIP_3.1-201ENST00000619957 337 ntBASIC5.57□□□□□ -1.52
PCDH9Q9HC56 FRG1EP-201ENST00000634469 770 ntBASIC5.57□□□□□ -1.52
PCDH9Q9HC56 GTPBP10-201ENST00000222511 7531 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PCDH9Q9HC56 MFAP1-201ENST00000267812 2155 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PCDH9Q9HC56 MIPOL1-204ENST00000539062 2389 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
PCDH9Q9HC56 OR2A7-202ENST00000641841 2062 ntAPPRIS P1 BASIC5.57□□□□□ -1.52
PCDH9Q9HC56 RGS6-204ENST00000404301 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PCDH9Q9HC56 RGS6-206ENST00000407322 1497 ntAPPRIS ALT1 TSL 1 (best) BASIC5.57□□□□□ -1.52
PCDH9Q9HC56 ZNF790-201ENST00000356725 3037 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 ZNF83-202ENST00000536937 2726 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 DLGAP5-202ENST00000395425 2954 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 VPS41-203ENST00000395969 3181 ntTSL 5 BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 ZEB1-219ENST00000560721 3368 ntAPPRIS ALT2 TSL 2 BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 ITGB3BP-201ENST00000271002 948 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 TAAR1-201ENST00000275216 1020 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 MTHFD2P5-201ENST00000320415 844 ntBASIC5.56□□□□□ -1.52
PCDH9Q9HC56 STATH-202ENST00000381060 534 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 AC005323.2-201ENST00000399342 583 ntTSL 3 BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 AC012499.1-201ENST00000412133 741 ntTSL 5 BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 AC009498.1-201ENST00000419860 541 ntTSL 4 BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 AC124944.2-201ENST00000429866 1242 ntBASIC5.56□□□□□ -1.52
PCDH9Q9HC56 AC090018.1-201ENST00000434369 367 ntBASIC5.56□□□□□ -1.52
PCDH9Q9HC56 LINC02094-201ENST00000437646 520 ntTSL 2 BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 AL390119.1-201ENST00000440329 312 ntBASIC5.56□□□□□ -1.52
PCDH9Q9HC56 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 AL035090.1-201ENST00000454835 332 ntBASIC5.56□□□□□ -1.52
PCDH9Q9HC56 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 NPM1P28-201ENST00000492269 840 ntBASIC5.56□□□□□ -1.52
PCDH9Q9HC56 RN7SL466P-201ENST00000497546 295 ntBASIC5.56□□□□□ -1.52
PCDH9Q9HC56 EIF4E-204ENST00000504432 1132 ntTSL 5 BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 MTND6P2-201ENST00000512226 524 ntBASIC5.56□□□□□ -1.52
PCDH9Q9HC56 AC107391.1-201ENST00000514966 412 ntTSL 2 BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 RN7SKP99-201ENST00000517028 307 ntBASIC5.56□□□□□ -1.52
PCDH9Q9HC56 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 AL359219.2-201ENST00000555184 348 ntBASIC5.56□□□□□ -1.52
PCDH9Q9HC56 AL161757.4-204ENST00000557136 834 ntTSL 3 BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 USP3-AS1-202ENST00000559357 455 ntTSL 2 BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 AC026464.3-201ENST00000563634 564 ntAPPRIS P1 TSL 4 BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 GS1-279B7.1-203ENST00000565520 609 ntTSL 5 BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 AC015720.2-201ENST00000567709 334 ntBASIC5.56□□□□□ -1.52
PCDH9Q9HC56 RN7SL356P-201ENST00000582228 248 ntBASIC5.56□□□□□ -1.52
PCDH9Q9HC56 LINC01125-220ENST00000599501 965 ntAPPRIS ALT2 TSL 5 BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 AL160400.1-201ENST00000606385 1030 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 AC109583.2-201ENST00000617367 129 ntBASIC5.56□□□□□ -1.52
PCDH9Q9HC56 AL590410.1-201ENST00000617925 333 ntBASIC5.56□□□□□ -1.52
PCDH9Q9HC56 AC253576.2-201ENST00000618815 580 ntBASIC5.56□□□□□ -1.52
PCDH9Q9HC56 AL356490.1-201ENST00000623079 479 ntBASIC5.56□□□□□ -1.52
PCDH9Q9HC56 AL355860.1-201ENST00000636087 1229 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 AC099654.6-201ENST00000636487 512 ntBASIC5.56□□□□□ -1.52
PCDH9Q9HC56 ART3-202ENST00000349321 1528 ntAPPRIS P3 TSL 1 (best) BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 AC093155.3-201ENST00000370548 2013 ntAPPRIS P1 TSL 2 BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 HMMR-202ENST00000358715 2988 ntAPPRIS P4 TSL 1 (best) BASIC5.56□□□□□ -1.52
PCDH9Q9HC56 SLC10A7-202ENST00000394059 1730 ntTSL 1 (best) BASIC5.56□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 85.7 ms