Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 CHCHD7-203ENST00000396723 1550 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
VPS13AQ96RL7 RUNX1T1-201ENST00000265814 7284 ntAPPRIS P3 TSL 5 BASIC4.84□□□□□ -1.64
VPS13AQ96RL7 AC021092.1-201ENST00000592946 3199 ntTSL 1 (best) BASIC4.84□□□□□ -1.64
VPS13AQ96RL7 MYBPC1-203ENST00000392934 3644 ntAPPRIS ALT2 TSL 2 BASIC4.84□□□□□ -1.64
VPS13AQ96RL7 OR52I1-202ENST00000530443 2961 ntAPPRIS P1 BASIC4.84□□□□□ -1.64
VPS13AQ96RL7 ARHGEF9-229ENST00000637040 5001 ntTSL 5 BASIC4.84□□□□□ -1.64
VPS13AQ96RL7 MMACHC-201ENST00000401061 5296 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.64
VPS13AQ96RL7 LRRN3-204ENST00000451085 3725 ntAPPRIS P1 TSL 2 BASIC4.84□□□□□ -1.64
VPS13AQ96RL7 CLDND1-208ENST00000503004 2818 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
VPS13AQ96RL7 STAU2-220ENST00000522695 2646 ntAPPRIS ALT1 TSL 1 (best) BASIC4.84□□□□□ -1.64
VPS13AQ96RL7 FOXJ3-204ENST00000372572 5352 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.64
VPS13AQ96RL7 KIF3A-203ENST00000403231 2181 ntTSL 2 BASIC4.84□□□□□ -1.64
VPS13AQ96RL7 RPS29P17-201ENST00000430795 166 ntBASIC4.83□□□□□ -1.64
VPS13AQ96RL7 AC097523.2-201ENST00000435551 652 ntBASIC4.83□□□□□ -1.64
VPS13AQ96RL7 AC003092.1-202ENST00000438538 743 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 REG1CP-206ENST00000447469 496 ntBASIC4.83□□□□□ -1.64
VPS13AQ96RL7 RPS5P7-201ENST00000456664 608 ntBASIC4.83□□□□□ -1.64
VPS13AQ96RL7 AC090204.1-202ENST00000500843 737 ntTSL 5 BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 AL035078.3-201ENST00000525382 241 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 AC011477.5-201ENST00000586571 259 ntBASIC4.83□□□□□ -1.64
VPS13AQ96RL7 ZNF33A-204ENST00000458705 6084 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 AC010186.3-201ENST00000537616 2508 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 CTNND1-202ENST00000361332 6295 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 AL442639.1-201ENST00000625030 1899 ntBASIC4.83□□□□□ -1.64
VPS13AQ96RL7 OR2A42-202ENST00000641810 4946 ntAPPRIS P1 BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 CASP10-204ENST00000346817 3926 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 EED-203ENST00000351625 1696 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 SREK1IP1-204ENST00000513458 6876 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 FOXP2-204ENST00000390668 1472 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 PRICKLE2-201ENST00000295902 7918 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 SNORA9-201ENST00000384215 133 ntBASIC4.83□□□□□ -1.64
VPS13AQ96RL7 AP003025.1-201ENST00000421650 149 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 AC091390.3-201ENST00000426478 338 ntBASIC4.83□□□□□ -1.64
VPS13AQ96RL7 AL133410.1-201ENST00000574939 546 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 EIF1P5-201ENST00000585002 234 ntBASIC4.83□□□□□ -1.64
VPS13AQ96RL7 NCKAP1-202ENST00000361354 20347 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 CPXCR1-202ENST00000373111 1577 ntAPPRIS P1 TSL 2 BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 SPEF2-202ENST00000356031 5681 ntAPPRIS P2 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 GPBP1-203ENST00000424459 4683 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 CAST-207ENST00000395813 4356 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 HYKK-206ENST00000569878 4097 ntAPPRIS P1 TSL 5 BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 LINC01520-201ENST00000441457 1487 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 RUFY3-201ENST00000226328 4233 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 PROM1-220ENST00000540805 3908 ntAPPRIS ALT2 TSL 5 BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 KIF27-201ENST00000297814 4653 ntAPPRIS P3 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 CTNND1-207ENST00000426142 5800 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 ACTR3P2-201ENST00000439585 1257 ntBASIC4.83□□□□□ -1.64
VPS13AQ96RL7 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 IGHV5-78-201ENST00000450948 295 ntBASIC4.83□□□□□ -1.64
VPS13AQ96RL7 EIF4A2P4-201ENST00000458691 1196 ntBASIC4.83□□□□□ -1.64
VPS13AQ96RL7 AC011462.3-201ENST00000598988 540 ntTSL 3 BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 MIR6853-201ENST00000619642 74 ntBASIC4.83□□□□□ -1.64
VPS13AQ96RL7 AL136084.2-203ENST00000630758 690 ntTSL 5 BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 UGP2-232ENST00000640075 567 ntTSL 5 BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 MYPN-204ENST00000540630 5707 ntAPPRIS P1 TSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 LINC01720-201ENST00000413356 2216 ntTSL 1 (best) BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 CUL3-216ENST00000617432 1426 ntTSL 5 BASIC4.83□□□□□ -1.64
VPS13AQ96RL7 AL137058.3-201ENST00000624531 3099 ntBASIC4.83□□□□□ -1.64
VPS13AQ96RL7 AC092958.1-201ENST00000467198 2569 ntTSL 2 BASIC4.82□□□□□ -1.64
VPS13AQ96RL7 STAB2-201ENST00000388887 8251 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS13AQ96RL7 ADGRL3-214ENST00000511324 5042 ntTSL 5 BASIC4.82□□□□□ -1.64
VPS13AQ96RL7 SCP2-205ENST00000408941 1298 ntTSL 2 BASIC4.82□□□□□ -1.64
VPS13AQ96RL7 RAB9AP4-201ENST00000415230 609 ntBASIC4.82□□□□□ -1.64
VPS13AQ96RL7 AC104389.1-201ENST00000418080 522 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS13AQ96RL7 AL691482.1-201ENST00000453255 87 ntBASIC4.82□□□□□ -1.64
VPS13AQ96RL7 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC4.82□□□□□ -1.64
VPS13AQ96RL7 IGLVIV-65-201ENST00000517313 360 ntBASIC4.82□□□□□ -1.64
VPS13AQ96RL7 AL357172.1-201ENST00000556016 593 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS13AQ96RL7 AC090125.1-201ENST00000581541 493 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS13AQ96RL7 CTSLP2-203ENST00000628708 493 ntTSL 5 BASIC4.82□□□□□ -1.64
VPS13AQ96RL7 TMEM132B-206ENST00000613307 9659 ntAPPRIS ALT2 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS13AQ96RL7 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
VPS13AQ96RL7 SYTL5-202ENST00000456733 4704 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS13AQ96RL7 AL590065.1-201ENST00000603371 4774 ntBASIC4.82□□□□□ -1.64
VPS13AQ96RL7 AC107953.2-201ENST00000518362 1408 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
VPS13AQ96RL7 STX3-208ENST00000641815 3236 ntBASIC4.82□□□□□ -1.64
VPS13AQ96RL7 PHTF2-202ENST00000275575 4541 ntTSL 1 (best) BASIC4.82□□□□□ -1.64
VPS13AQ96RL7 IFI16-202ENST00000340979 2732 ntTSL 5 BASIC4.82□□□□□ -1.64
VPS13AQ96RL7 IFI16-204ENST00000368131 2734 ntAPPRIS P3 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS13AQ96RL7 ZEB2-234ENST00000636413 8984 ntTSL 5 BASIC4.82□□□□□ -1.64
VPS13AQ96RL7 GON4L-201ENST00000271883 7138 ntAPPRIS P3 TSL 5 BASIC4.82□□□□□ -1.64
VPS13AQ96RL7 GIGYF2-202ENST00000409196 5747 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS13AQ96RL7 SPRR2A-201ENST00000392653 709 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS13AQ96RL7 OR8V1P-201ENST00000395193 873 ntBASIC4.82□□□□□ -1.64
VPS13AQ96RL7 FABP7P1-201ENST00000424004 391 ntBASIC4.82□□□□□ -1.64
VPS13AQ96RL7 BX323845.1-201ENST00000432417 179 ntBASIC4.82□□□□□ -1.64
VPS13AQ96RL7 NOP56P2-201ENST00000447491 769 ntBASIC4.82□□□□□ -1.64
VPS13AQ96RL7 SLC25A51P1-201ENST00000468432 871 ntBASIC4.82□□□□□ -1.64
VPS13AQ96RL7 AC079910.1-201ENST00000477099 749 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS13AQ96RL7 RPL7P40-201ENST00000481703 745 ntBASIC4.82□□□□□ -1.64
VPS13AQ96RL7 RN7SL810P-201ENST00000493031 276 ntBASIC4.82□□□□□ -1.64
VPS13AQ96RL7 AC006499.6-201ENST00000511169 607 ntBASIC4.82□□□□□ -1.64
VPS13AQ96RL7 ALOX12P2-208ENST00000574183 519 ntTSL 3 BASIC4.82□□□□□ -1.64
VPS13AQ96RL7 PCNX1-201ENST00000304743 12919 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS13AQ96RL7 SLC38A1-211ENST00000612161 1607 ntTSL 5 BASIC4.82□□□□□ -1.64
VPS13AQ96RL7 AC105105.2-201ENST00000590797 4521 ntTSL 2 BASIC4.82□□□□□ -1.64
VPS13AQ96RL7 U2SURP-214ENST00000493598 3491 ntTSL 5 BASIC4.82□□□□□ -1.64
VPS13AQ96RL7 CCDC62-205ENST00000537566 3537 ntAPPRIS ALT2 TSL 2 BASIC4.82□□□□□ -1.64
VPS13AQ96RL7 TLR7-201ENST00000380659 5011 ntAPPRIS P1 TSL 1 (best) BASIC4.82□□□□□ -1.64
VPS13AQ96RL7 USP37-205ENST00000454775 5019 ntAPPRIS P1 TSL 2 BASIC4.82□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 135.9 ms