Protein–RNA interactions for Protein: P51956

NEK3, Serine/threonine-protein kinase Nek3, humanhuman

Predictions only

Length 506 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3P51956 C4orf17-201ENST00000326581 1636 ntAPPRIS P2 TSL 1 (best) BASIC6.08□□□□□ -1.44
NEK3P51956 ZNF679-201ENST00000255746 1297 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
NEK3P51956 SNORA62.2-201ENST00000364672 152 ntBASIC6.08□□□□□ -1.44
NEK3P51956 SLC20A1P1-201ENST00000413906 956 ntBASIC6.08□□□□□ -1.44
NEK3P51956 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC6.08□□□□□ -1.44
NEK3P51956 AL590727.1-201ENST00000418652 771 ntTSL 2 BASIC6.08□□□□□ -1.44
NEK3P51956 VN1R37P-201ENST00000419096 748 ntBASIC6.08□□□□□ -1.44
NEK3P51956 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC6.08□□□□□ -1.44
NEK3P51956 MS4A6A-202ENST00000420732 863 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
NEK3P51956 AL390243.1-201ENST00000422038 708 ntTSL 2 BASIC6.08□□□□□ -1.44
NEK3P51956 LINC00400-201ENST00000425609 547 ntTSL 3 BASIC6.08□□□□□ -1.44
NEK3P51956 SEC63P1-201ENST00000425785 1258 ntBASIC6.08□□□□□ -1.44
NEK3P51956 RPL5P2-201ENST00000429598 854 ntBASIC6.08□□□□□ -1.44
NEK3P51956 LINC01307-202ENST00000444327 771 ntTSL 2 BASIC6.08□□□□□ -1.44
NEK3P51956 AL157400.3-201ENST00000449882 1298 ntTSL 5 BASIC6.08□□□□□ -1.44
NEK3P51956 RPL23AP60-201ENST00000450011 454 ntBASIC6.08□□□□□ -1.44
NEK3P51956 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC6.08□□□□□ -1.44
NEK3P51956 RN7SL352P-201ENST00000466002 277 ntBASIC6.08□□□□□ -1.44
NEK3P51956 AC124945.1-201ENST00000485133 188 ntBASIC6.08□□□□□ -1.44
NEK3P51956 RPS27AP16-201ENST00000492222 470 ntBASIC6.08□□□□□ -1.44
NEK3P51956 AC091826.2-201ENST00000504034 412 ntTSL 3 BASIC6.08□□□□□ -1.44
NEK3P51956 RNA5SP438-201ENST00000516561 112 ntBASIC6.08□□□□□ -1.44
NEK3P51956 RNA5SP271-201ENST00000516700 88 ntBASIC6.08□□□□□ -1.44
NEK3P51956 AC018861.2-201ENST00000518078 513 ntTSL 2 BASIC6.08□□□□□ -1.44
NEK3P51956 AC008705.1-201ENST00000518837 489 ntTSL 3 BASIC6.08□□□□□ -1.44
NEK3P51956 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC6.08□□□□□ -1.44
NEK3P51956 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC6.08□□□□□ -1.44
NEK3P51956 OR5AK3P-201ENST00000527486 1297 ntBASIC6.08□□□□□ -1.44
NEK3P51956 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC6.08□□□□□ -1.44
NEK3P51956 AC048382.2-201ENST00000560239 492 ntTSL 2 BASIC6.08□□□□□ -1.44
NEK3P51956 AC092134.1-201ENST00000563690 800 ntTSL 3 BASIC6.08□□□□□ -1.44
NEK3P51956 AC011458.1-201ENST00000604034 617 ntBASIC6.08□□□□□ -1.44
NEK3P51956 AL671511.2-201ENST00000611838 659 ntTSL 2 BASIC6.08□□□□□ -1.44
NEK3P51956 MIR6809-201ENST00000612189 116 ntBASIC6.08□□□□□ -1.44
NEK3P51956 MIR7973-1-201ENST00000614683 76 ntBASIC6.08□□□□□ -1.44
NEK3P51956 SNX18P12-201ENST00000624821 759 ntBASIC6.08□□□□□ -1.44
NEK3P51956 TMEM30CP-203ENST00000637814 1035 ntBASIC6.08□□□□□ -1.44
NEK3P51956 LEPR-208ENST00000616738 5081 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
NEK3P51956 FAM229B-201ENST00000368656 2543 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
NEK3P51956 ZNF337-AS1-201ENST00000414393 4666 ntTSL 2 BASIC6.08□□□□□ -1.44
NEK3P51956 NUF2-202ENST00000367900 1842 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
NEK3P51956 AC012254.3-201ENST00000591183 2117 ntBASIC6.08□□□□□ -1.44
NEK3P51956 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
NEK3P51956 ADGRL3-218ENST00000514996 4731 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
NEK3P51956 ZNF615-213ENST00000602063 4094 ntAPPRIS P3 TSL 5 BASIC6.08□□□□□ -1.44
NEK3P51956 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
NEK3P51956 PARP4P2-201ENST00000446672 3326 ntBASIC6.07□□□□□ -1.44
NEK3P51956 RYR2-201ENST00000360064 14850 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
NEK3P51956 C17orf105-201ENST00000449302 3753 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
NEK3P51956 FILIP1L-202ENST00000354552 3970 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
NEK3P51956 AC009095.1-201ENST00000388909 1326 ntTSL 5 BASIC6.07□□□□□ -1.44
NEK3P51956 ZNF480-205ENST00000595962 4738 ntAPPRIS P3 TSL 1 (best) BASIC6.07□□□□□ -1.44
NEK3P51956 AF287957.1-201ENST00000607368 1595 ntBASIC6.07□□□□□ -1.44
NEK3P51956 BICD1-204ENST00000548411 8811 ntAPPRIS ALT1 TSL 1 (best) BASIC6.07□□□□□ -1.44
NEK3P51956 CHRDL1-202ENST00000372045 3860 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
NEK3P51956 LINC00707-201ENST00000436383 3070 ntTSL 2 BASIC6.07□□□□□ -1.44
NEK3P51956 Z95114.1-201ENST00000624264 14574 ntBASIC6.07□□□□□ -1.44
NEK3P51956 REP15-201ENST00000310791 1078 ntAPPRIS P1 BASIC6.07□□□□□ -1.44
NEK3P51956 HBG1-201ENST00000330597 808 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
NEK3P51956 RBMS3-AS2-201ENST00000366321 582 ntTSL 3 BASIC6.07□□□□□ -1.44
NEK3P51956 CTNNAL1-203ENST00000374594 824 ntTSL 3 BASIC6.07□□□□□ -1.44
NEK3P51956 LYPLA1P3-201ENST00000402650 695 ntBASIC6.07□□□□□ -1.44
NEK3P51956 AL365184.1-201ENST00000413801 572 ntTSL 3 BASIC6.07□□□□□ -1.44
NEK3P51956 AL445183.3-201ENST00000414168 502 ntBASIC6.07□□□□□ -1.44
NEK3P51956 MTND2P9-201ENST00000422293 931 ntBASIC6.07□□□□□ -1.44
NEK3P51956 DEFB130D-201ENST00000426866 237 ntBASIC6.07□□□□□ -1.44
NEK3P51956 LINC01935-201ENST00000431897 437 ntTSL 3 BASIC6.07□□□□□ -1.44
NEK3P51956 TUBB4BP6-201ENST00000437576 479 ntBASIC6.07□□□□□ -1.44
NEK3P51956 AF130359.1-201ENST00000444868 438 ntTSL 3 BASIC6.07□□□□□ -1.44
NEK3P51956 AL139275.1-201ENST00000447315 824 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
NEK3P51956 AL358075.1-201ENST00000450004 649 ntTSL 3 BASIC6.07□□□□□ -1.44
NEK3P51956 RPL7AP52-201ENST00000458096 790 ntBASIC6.07□□□□□ -1.44
NEK3P51956 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC6.07□□□□□ -1.44
NEK3P51956 AC104687.1-201ENST00000485829 412 ntBASIC6.07□□□□□ -1.44
NEK3P51956 RN7SL193P-201ENST00000491708 276 ntBASIC6.07□□□□□ -1.44
NEK3P51956 LINC02005-201ENST00000498832 782 ntTSL 3 BASIC6.07□□□□□ -1.44
NEK3P51956 LINC02503-201ENST00000510505 812 ntTSL 2 BASIC6.07□□□□□ -1.44
NEK3P51956 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
NEK3P51956 snoU109.6-201ENST00000516831 118 ntBASIC6.07□□□□□ -1.44
NEK3P51956 HGNC:24955-208ENST00000521585 1260 ntTSL 4 BASIC6.07□□□□□ -1.44
NEK3P51956 WBP1LP3-201ENST00000523033 208 ntBASIC6.07□□□□□ -1.44
NEK3P51956 AP003066.2-201ENST00000529375 555 ntBASIC6.07□□□□□ -1.44
NEK3P51956 RSF1-IT2-201ENST00000529656 566 ntTSL 5 BASIC6.07□□□□□ -1.44
NEK3P51956 PAFAH1B2-206ENST00000530272 850 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
NEK3P51956 AP000873.2-204ENST00000530825 375 ntTSL 3 BASIC6.07□□□□□ -1.44
NEK3P51956 OTX2-203ENST00000554559 715 ntTSL 5 BASIC6.07□□□□□ -1.44
NEK3P51956 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC6.07□□□□□ -1.44
NEK3P51956 LINC01533-201ENST00000585739 616 ntTSL 5 BASIC6.07□□□□□ -1.44
NEK3P51956 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC6.07□□□□□ -1.44
NEK3P51956 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC6.07□□□□□ -1.44
NEK3P51956 AL355974.3-201ENST00000617383 467 ntBASIC6.07□□□□□ -1.44
NEK3P51956 FRG1HP-204ENST00000617940 757 ntBASIC6.07□□□□□ -1.44
NEK3P51956 AC009269.6-201ENST00000621778 588 ntBASIC6.07□□□□□ -1.44
NEK3P51956 LINC01955-201ENST00000626392 792 ntTSL 5 BASIC6.07□□□□□ -1.44
NEK3P51956 ATM-229ENST00000639953 587 ntTSL 5 BASIC6.07□□□□□ -1.44
NEK3P51956 ZNF248-201ENST00000357328 4795 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
NEK3P51956 ZMYM6-201ENST00000317538 2702 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
NEK3P51956 PARD3B-214ENST00000622699 7442 ntTSL 5 BASIC6.07□□□□□ -1.44
NEK3P51956 ZNF639-210ENST00000621687 1458 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
NEK3P51956 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC6.07□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 78.4 ms