Protein–RNA interactions for Protein: P35548

MSX2, Homeobox protein MSX-2, humanhuman

Predicted RBP Predictions only

Length 267 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX2P35548 SMAD5-211ENST00000545279 7012 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
MSX2P35548 AC021086.1-201ENST00000499025 1569 ntTSL 3 BASIC5.87□□□□□ -1.47
MSX2P35548 ARHGAP15-201ENST00000295095 1775 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
MSX2P35548 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC5.87□□□□□ -1.47
MSX2P35548 AC011933.2-201ENST00000578539 2790 ntBASIC5.87□□□□□ -1.47
MSX2P35548 TMC5-201ENST00000219821 3687 ntAPPRIS P3 TSL 1 (best) BASIC5.87□□□□□ -1.47
MSX2P35548 SLC25A30-204ENST00000519676 3670 ntAPPRIS P1 TSL 1 (best) BASIC5.87□□□□□ -1.47
MSX2P35548 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
MSX2P35548 ECT2-216ENST00000540509 4406 ntAPPRIS P2 TSL 5 BASIC5.86□□□□□ -1.47
MSX2P35548 ATF2-212ENST00000426833 4132 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
MSX2P35548 MYBPC1-214ENST00000549145 4031 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
MSX2P35548 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.86□□□□□ -1.47
MSX2P35548 AL160286.3-201ENST00000569644 3294 ntTSL 2 BASIC5.86□□□□□ -1.47
MSX2P35548 LCA5L-203ENST00000380671 2080 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
MSX2P35548 AP000432.2-201ENST00000624164 2048 ntBASIC5.86□□□□□ -1.47
MSX2P35548 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
MSX2P35548 VNN2-206ENST00000525270 1608 ntAPPRIS ALT2 TSL 2 BASIC5.86□□□□□ -1.47
MSX2P35548 ZNF849P-201ENST00000594711 1566 ntBASIC5.86□□□□□ -1.47
MSX2P35548 NCOA3-202ENST00000371998 4668 ntAPPRIS P4 TSL 1 (best) BASIC5.86□□□□□ -1.47
MSX2P35548 AL133268.1-201ENST00000405676 1401 ntBASIC5.86□□□□□ -1.47
MSX2P35548 AC092451.3-201ENST00000625067 1343 ntBASIC5.86□□□□□ -1.47
MSX2P35548 IL5-201ENST00000231454 816 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
MSX2P35548 SPATA42-201ENST00000369989 535 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
MSX2P35548 Y_RNA.559-201ENST00000384686 107 ntBASIC5.86□□□□□ -1.47
MSX2P35548 RSL24D1P4-201ENST00000400938 484 ntBASIC5.86□□□□□ -1.47
MSX2P35548 MTCO1P56-201ENST00000401674 224 ntBASIC5.86□□□□□ -1.47
MSX2P35548 AL590084.1-201ENST00000407885 387 ntBASIC5.86□□□□□ -1.47
MSX2P35548 RN7SKP17-201ENST00000411242 351 ntBASIC5.86□□□□□ -1.47
MSX2P35548 RPS7P9-201ENST00000414704 586 ntBASIC5.86□□□□□ -1.47
MSX2P35548 AL133268.4-201ENST00000424868 472 ntTSL 3 BASIC5.86□□□□□ -1.47
MSX2P35548 AL138775.1-201ENST00000429539 575 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
MSX2P35548 PUDPP2-201ENST00000431423 643 ntBASIC5.86□□□□□ -1.47
MSX2P35548 AL583839.2-201ENST00000443716 641 ntTSL 3 BASIC5.86□□□□□ -1.47
MSX2P35548 LINC01376-204ENST00000449124 626 ntTSL 2 BASIC5.86□□□□□ -1.47
MSX2P35548 CCRL1P1-201ENST00000449542 1053 ntBASIC5.86□□□□□ -1.47
MSX2P35548 NECAP1P2-201ENST00000455668 727 ntBASIC5.86□□□□□ -1.47
MSX2P35548 TREML3P-201ENST00000457327 501 ntBASIC5.86□□□□□ -1.47
MSX2P35548 AC010655.2-201ENST00000493710 662 ntTSL 3 BASIC5.86□□□□□ -1.47
MSX2P35548 RN7SL284P-201ENST00000498823 275 ntBASIC5.86□□□□□ -1.47
MSX2P35548 AC020900.1-201ENST00000502568 565 ntTSL 4 BASIC5.86□□□□□ -1.47
MSX2P35548 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC5.86□□□□□ -1.47
MSX2P35548 LINC01339-201ENST00000505712 440 ntTSL 2 BASIC5.86□□□□□ -1.47
MSX2P35548 ADGRL3-AS1-203ENST00000506704 606 ntTSL 5 BASIC5.86□□□□□ -1.47
MSX2P35548 AC093325.1-201ENST00000508378 326 ntBASIC5.86□□□□□ -1.47
MSX2P35548 TOMM22P4-201ENST00000511318 336 ntBASIC5.86□□□□□ -1.47
MSX2P35548 LINC01365-202ENST00000512219 637 ntTSL 5 BASIC5.86□□□□□ -1.47
MSX2P35548 RNU6-759P-201ENST00000516740 103 ntBASIC5.86□□□□□ -1.47
MSX2P35548 RNU6-232P-201ENST00000517144 64 ntBASIC5.86□□□□□ -1.47
MSX2P35548 TMEM97P2-201ENST00000517841 403 ntBASIC5.86□□□□□ -1.47
MSX2P35548 PTK2-220ENST00000520151 573 ntTSL 4 BASIC5.86□□□□□ -1.47
MSX2P35548 AC007876.1-201ENST00000527562 983 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
MSX2P35548 RPA2P3-201ENST00000533268 770 ntBASIC5.86□□□□□ -1.47
MSX2P35548 LRTOMT-217ENST00000539587 428 ntTSL 2 BASIC5.86□□□□□ -1.47
MSX2P35548 GLYCAM1-202ENST00000546607 553 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
MSX2P35548 AC025031.1-201ENST00000552634 562 ntTSL 4 BASIC5.86□□□□□ -1.47
MSX2P35548 AL133370.1-201ENST00000554679 537 ntTSL 3 BASIC5.86□□□□□ -1.47
MSX2P35548 LINC02319-201ENST00000555852 349 ntTSL 3 BASIC5.86□□□□□ -1.47
MSX2P35548 LINS1-207ENST00000560133 1196 ntTSL 2 BASIC5.86□□□□□ -1.47
MSX2P35548 AC092718.4-201ENST00000566639 716 ntBASIC5.86□□□□□ -1.47
MSX2P35548 CCDC178-208ENST00000579916 1017 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
MSX2P35548 AC022069.1-201ENST00000582910 658 ntBASIC5.86□□□□□ -1.47
MSX2P35548 AC015878.1-201ENST00000584611 679 ntTSL 3 BASIC5.86□□□□□ -1.47
MSX2P35548 AC005332.4-201ENST00000592752 579 ntBASIC5.86□□□□□ -1.47
MSX2P35548 AL031985.2-201ENST00000600955 480 ntBASIC5.86□□□□□ -1.47
MSX2P35548 AC067773.1-201ENST00000603284 1094 ntBASIC5.86□□□□□ -1.47
MSX2P35548 LINC01050-201ENST00000604485 760 ntTSL 3 BASIC5.86□□□□□ -1.47
MSX2P35548 AP000254.1-201ENST00000609934 520 ntBASIC5.86□□□□□ -1.47
MSX2P35548 AC244100.4-201ENST00000617747 388 ntBASIC5.86□□□□□ -1.47
MSX2P35548 AC243829.2-201ENST00000617914 470 ntTSL 3 BASIC5.86□□□□□ -1.47
MSX2P35548 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
MSX2P35548 AC015722.2-201ENST00000622210 551 ntBASIC5.86□□□□□ -1.47
MSX2P35548 NFAT5-212ENST00000627621 5875 ntAPPRIS ALT1 TSL 2 BASIC5.86□□□□□ -1.47
MSX2P35548 PLCB4-201ENST00000278655 5430 ntAPPRIS ALT1 TSL 1 (best) BASIC5.86□□□□□ -1.47
MSX2P35548 LZTFL1-215ENST00000536047 4342 ntTSL 2 BASIC5.86□□□□□ -1.47
MSX2P35548 AKAP7-201ENST00000263050 2238 ntTSL 5 BASIC5.86□□□□□ -1.47
MSX2P35548 AC004852.2-201ENST00000614289 2218 ntTSL 1 (best) BASIC5.86□□□□□ -1.47
MSX2P35548 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
MSX2P35548 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.86□□□□□ -1.47
MSX2P35548 HELZ-207ENST00000580168 6279 ntAPPRIS P1 TSL 1 (best) BASIC5.86□□□□□ -1.47
MSX2P35548 ADGRL3-210ENST00000508946 4758 ntAPPRIS ALT2 TSL 5 BASIC5.86□□□□□ -1.47
MSX2P35548 PIGN-247ENST00000640540 4720 ntTSL 5 BASIC5.86□□□□□ -1.47
MSX2P35548 SCN1A-203ENST00000409050 5946 ntTSL 5 BASIC5.86□□□□□ -1.47
MSX2P35548 EPS8-209ENST00000542903 1858 ntTSL 2 BASIC5.85□□□□□ -1.47
MSX2P35548 ZNF23-207ENST00000564528 3020 ntAPPRIS ALT2 TSL 2 BASIC5.85□□□□□ -1.47
MSX2P35548 DECR1-215ENST00000522161 1766 ntAPPRIS ALT2 TSL 2 BASIC5.85□□□□□ -1.47
MSX2P35548 PTPRB-210ENST00000551525 5291 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
MSX2P35548 AC079601.1-201ENST00000547824 2791 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
MSX2P35548 ATXN2-202ENST00000389153 3854 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
MSX2P35548 ADAM21-201ENST00000603540 2658 ntAPPRIS P1 TSL 3 BASIC5.85□□□□□ -1.47
MSX2P35548 OR2AP1-202ENST00000641114 1548 ntAPPRIS P1 BASIC5.85□□□□□ -1.47
MSX2P35548 MPHOSPH9-220ENST00000606320 6351 ntAPPRIS P2 TSL 5 BASIC5.85□□□□□ -1.47
MSX2P35548 RBPJP6-201ENST00000411556 1431 ntBASIC5.85□□□□□ -1.47
MSX2P35548 NOSTRIN-201ENST00000317647 2294 ntAPPRIS P1 TSL 1 (best) BASIC5.85□□□□□ -1.47
MSX2P35548 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.85□□□□□ -1.47
MSX2P35548 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.85□□□□□ -1.47
MSX2P35548 AC124312.1-201ENST00000551312 1325 ntAPPRIS P5 TSL 5 BASIC5.85□□□□□ -1.47
MSX2P35548 AC024587.1-201ENST00000505925 2157 ntBASIC5.85□□□□□ -1.47
MSX2P35548 KIF16B-202ENST00000355755 606 ntTSL 1 (best) BASIC5.85□□□□□ -1.47
MSX2P35548 SNORD1C-201ENST00000363315 78 ntBASIC5.85□□□□□ -1.47
MSX2P35548 AL672167.2-201ENST00000377164 879 ntBASIC5.85□□□□□ -1.47
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms