Protein–RNA interactions for Protein: O00409

FOXN3, Forkhead box protein N3, humanhuman

Predicted RBP Predictions only

Length 490 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXN3O00409 IKZF2-201ENST00000342002 3747 ntAPPRIS ALT2 TSL 1 (best) BASIC6.1□□□□□ -1.43
FOXN3O00409 VNN2-201ENST00000326499 2118 ntAPPRIS P4 TSL 1 (best) BASIC6.1□□□□□ -1.43
FOXN3O00409 AC011912.1-201ENST00000623483 5819 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
FOXN3O00409 FILIP1L-201ENST00000331335 4219 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
FOXN3O00409 AC007557.3-201ENST00000418591 3135 ntTSL 2 BASIC6.1□□□□□ -1.43
FOXN3O00409 AFM-201ENST00000226355 2059 ntAPPRIS P1 TSL 1 (best) BASIC6.1□□□□□ -1.43
FOXN3O00409 RAD17-220ENST00000616683 3057 ntTSL 1 (best) BASIC6.1□□□□□ -1.43
FOXN3O00409 FAM170B-AS1-203ENST00000442525 2000 ntTSL 2 BASIC6.09□□□□□ -1.43
FOXN3O00409 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC6.09□□□□□ -1.43
FOXN3O00409 ZNF285-204ENST00000591679 2388 ntAPPRIS ALT2 TSL 4 BASIC6.09□□□□□ -1.43
FOXN3O00409 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
FOXN3O00409 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC6.09□□□□□ -1.43
FOXN3O00409 RLN1-201ENST00000223862 967 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
FOXN3O00409 RNASE2-201ENST00000304625 755 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
FOXN3O00409 TAF13-201ENST00000338366 813 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
FOXN3O00409 FAS-203ENST00000355279 983 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
FOXN3O00409 RPS24-201ENST00000360830 514 ntAPPRIS ALT1 TSL 1 (best) BASIC6.09□□□□□ -1.43
FOXN3O00409 YAF2-202ENST00000380790 1211 ntTSL 2 BASIC6.09□□□□□ -1.43
FOXN3O00409 RNU6-354P-201ENST00000383862 107 ntBASIC6.09□□□□□ -1.43
FOXN3O00409 RNU6-610P-201ENST00000384264 107 ntBASIC6.09□□□□□ -1.43
FOXN3O00409 AC099535.1-201ENST00000408928 371 ntBASIC6.09□□□□□ -1.43
FOXN3O00409 LINC00396-201ENST00000411690 439 ntTSL 3 BASIC6.09□□□□□ -1.43
FOXN3O00409 AC097467.3-223ENST00000417474 449 ntTSL 3 BASIC6.09□□□□□ -1.43
FOXN3O00409 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC6.09□□□□□ -1.43
FOXN3O00409 SPARCL1-202ENST00000418378 2994 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
FOXN3O00409 AC019117.1-202ENST00000439046 589 ntTSL 3 BASIC6.09□□□□□ -1.43
FOXN3O00409 AL137186.1-201ENST00000440436 480 ntTSL 3 BASIC6.09□□□□□ -1.43
FOXN3O00409 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
FOXN3O00409 CBX1P5-201ENST00000475330 559 ntBASIC6.09□□□□□ -1.43
FOXN3O00409 AC117394.1-201ENST00000477323 567 ntBASIC6.09□□□□□ -1.43
FOXN3O00409 RN7SL423P-201ENST00000486202 304 ntBASIC6.09□□□□□ -1.43
FOXN3O00409 RN7SL649P-201ENST00000496974 275 ntBASIC6.09□□□□□ -1.43
FOXN3O00409 NUDT6-203ENST00000502270 678 ntTSL 5 BASIC6.09□□□□□ -1.43
FOXN3O00409 IGLV3-24-201ENST00000517477 197 ntBASIC6.09□□□□□ -1.43
FOXN3O00409 CCDC7-209ENST00000539197 581 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
FOXN3O00409 GPRC5D-AS1-205ENST00000540198 404 ntTSL 5 BASIC6.09□□□□□ -1.43
FOXN3O00409 ZFAND6-208ENST00000558688 780 ntTSL 2 BASIC6.09□□□□□ -1.43
FOXN3O00409 ARPP19-204ENST00000563277 955 ntTSL 2 BASIC6.09□□□□□ -1.43
FOXN3O00409 CASC22-201ENST00000569713 386 ntTSL 5 BASIC6.09□□□□□ -1.43
FOXN3O00409 AC092132.1-201ENST00000570859 352 ntTSL 3 BASIC6.09□□□□□ -1.43
FOXN3O00409 AC130371.1-201ENST00000577023 230 ntTSL 5 BASIC6.09□□□□□ -1.43
FOXN3O00409 SSX4B-201ENST00000595235 1221 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
FOXN3O00409 SSX4-201ENST00000595689 1221 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.43
FOXN3O00409 COX6CP7-201ENST00000597056 208 ntBASIC6.09□□□□□ -1.43
FOXN3O00409 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC6.09□□□□□ -1.43
FOXN3O00409 AC242426.3-203ENST00000606757 712 ntTSL 3 BASIC6.09□□□□□ -1.43
FOXN3O00409 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.43
FOXN3O00409 YPEL5-202ENST00000379519 2499 ntAPPRIS P1 TSL 2 BASIC6.09□□□□□ -1.43
FOXN3O00409 DLC1-209ENST00000511869 2451 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
FOXN3O00409 ZNF189-201ENST00000259395 3115 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
FOXN3O00409 MMP8-201ENST00000236826 3056 ntAPPRIS P1 TSL 1 (best) BASIC6.09□□□□□ -1.44
FOXN3O00409 WDR95P-201ENST00000425638 1542 ntBASIC6.09□□□□□ -1.44
FOXN3O00409 SYNCRIP-204ENST00000616122 6764 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
FOXN3O00409 MRE11-203ENST00000393241 2604 ntAPPRIS ALT1 TSL 5 BASIC6.09□□□□□ -1.44
FOXN3O00409 SPAM1-203ENST00000402183 1860 ntAPPRIS P4 TSL 5 BASIC6.09□□□□□ -1.44
FOXN3O00409 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
FOXN3O00409 SMARCA2-201ENST00000302401 2242 ntTSL 2 BASIC6.09□□□□□ -1.44
FOXN3O00409 NPHP1-204ENST00000417665 2246 ntTSL 5 BASIC6.09□□□□□ -1.44
FOXN3O00409 C8orf22-201ENST00000303202 1499 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
FOXN3O00409 TBC1D15-201ENST00000319106 2159 ntTSL 2 BASIC6.08□□□□□ -1.44
FOXN3O00409 ZNF546-201ENST00000347077 7987 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
FOXN3O00409 ZNF780A-204ENST00000455521 3600 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
FOXN3O00409 ZNF33B-208ENST00000613419 5843 ntAPPRIS ALT2 TSL 5 BASIC6.08□□□□□ -1.44
FOXN3O00409 SMG1P7-201ENST00000565246 2704 ntBASIC6.08□□□□□ -1.44
FOXN3O00409 PREPL-201ENST00000260648 3672 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
FOXN3O00409 KIAA1328-201ENST00000280020 4853 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
FOXN3O00409 PLS1-211ENST00000497002 2258 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
FOXN3O00409 UGGT1-201ENST00000259253 10650 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
FOXN3O00409 OR7G2-201ENST00000305456 1038 ntAPPRIS P2 BASIC6.08□□□□□ -1.44
FOXN3O00409 USMG5-201ENST00000309579 364 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
FOXN3O00409 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC6.08□□□□□ -1.44
FOXN3O00409 RNU1-146P-201ENST00000364015 165 ntBASIC6.08□□□□□ -1.44
FOXN3O00409 RNU4-7P-201ENST00000364758 141 ntBASIC6.08□□□□□ -1.44
FOXN3O00409 GAPDHP15-201ENST00000398586 975 ntBASIC6.08□□□□□ -1.44
FOXN3O00409 OR7E101P-201ENST00000400428 513 ntBASIC6.08□□□□□ -1.44
FOXN3O00409 MTND4P11-201ENST00000417020 1058 ntBASIC6.08□□□□□ -1.44
FOXN3O00409 AL354868.1-201ENST00000417077 482 ntBASIC6.08□□□□□ -1.44
FOXN3O00409 OR10T1P-201ENST00000424327 947 ntBASIC6.08□□□□□ -1.44
FOXN3O00409 AC068631.1-204ENST00000428501 534 ntTSL 3 BASIC6.08□□□□□ -1.44
FOXN3O00409 HMGB3P24-201ENST00000433260 622 ntBASIC6.08□□□□□ -1.44
FOXN3O00409 GUSBP6-201ENST00000434932 640 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
FOXN3O00409 AC007327.2-201ENST00000440788 457 ntTSL 3 BASIC6.08□□□□□ -1.44
FOXN3O00409 AL355601.1-201ENST00000444701 427 ntTSL 3 BASIC6.08□□□□□ -1.44
FOXN3O00409 AC069540.1-201ENST00000446320 988 ntBASIC6.08□□□□□ -1.44
FOXN3O00409 C2orf80-206ENST00000451346 979 ntTSL 5 BASIC6.08□□□□□ -1.44
FOXN3O00409 HMGB1P26-201ENST00000452520 628 ntBASIC6.08□□□□□ -1.44
FOXN3O00409 CALM1P2-201ENST00000452941 448 ntBASIC6.08□□□□□ -1.44
FOXN3O00409 HLA-DPA3-207ENST00000454398 229 ntBASIC6.08□□□□□ -1.44
FOXN3O00409 AC073130.1-202ENST00000454897 587 ntTSL 2 BASIC6.08□□□□□ -1.44
FOXN3O00409 ACA64.1-201ENST00000459171 127 ntBASIC6.08□□□□□ -1.44
FOXN3O00409 RN7SL741P-201ENST00000482473 289 ntBASIC6.08□□□□□ -1.44
FOXN3O00409 RPL21P47-201ENST00000483696 477 ntBASIC6.08□□□□□ -1.44
FOXN3O00409 CCDC169-211ENST00000503173 837 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
FOXN3O00409 AC096773.1-201ENST00000506852 648 ntTSL 3 BASIC6.08□□□□□ -1.44
FOXN3O00409 TMEM161B-AS1-208ENST00000507736 630 ntTSL 3 BASIC6.08□□□□□ -1.44
FOXN3O00409 AF250324.1-203ENST00000508156 517 ntTSL 3 BASIC6.08□□□□□ -1.44
FOXN3O00409 AC006499.4-201ENST00000510947 694 ntBASIC6.08□□□□□ -1.44
FOXN3O00409 RN7SKP253-201ENST00000516424 309 ntBASIC6.08□□□□□ -1.44
FOXN3O00409 AC060775.1-201ENST00000518241 520 ntBASIC6.08□□□□□ -1.44
FOXN3O00409 ARL6IP1P3-201ENST00000524544 560 ntBASIC6.08□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 129.9 ms