Protein–RNA interactions for Protein: Q9UBR4

LHX3, LIM/homeobox protein Lhx3, humanhuman

Predictions only

Length 397 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LHX3Q9UBR4 LINC02446-201ENST00000544591 868 ntTSL 2 BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 HAUS8P1-201ENST00000549005 542 ntBASIC5.29□□□□□ -1.56
LHX3Q9UBR4 ZNF227-204ENST00000586228 569 ntTSL 2 BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 LINC02073-202ENST00000592081 535 ntTSL 4 BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 GMFG-202ENST00000594700 397 ntTSL 2 BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 TAS2R6P-201ENST00000605022 826 ntBASIC5.29□□□□□ -1.56
LHX3Q9UBR4 AC016769.4-201ENST00000616893 535 ntBASIC5.29□□□□□ -1.56
LHX3Q9UBR4 MIR6719-201ENST00000622428 87 ntBASIC5.29□□□□□ -1.56
LHX3Q9UBR4 AC009120.7-201ENST00000623452 780 ntBASIC5.29□□□□□ -1.56
LHX3Q9UBR4 DUXB-201ENST00000633875 1079 ntAPPRIS P1 TSL 3 BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 AC004656.1-201ENST00000568479 4951 ntBASIC5.29□□□□□ -1.56
LHX3Q9UBR4 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 CCR2-202ENST00000400888 2232 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 CASC19-260ENST00000641828 2001 ntBASIC5.29□□□□□ -1.56
LHX3Q9UBR4 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 ST8SIA4-201ENST00000231461 6303 ntAPPRIS P1 TSL 1 (best) BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 LEPROT-206ENST00000613538 4625 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 CEP164P1-202ENST00000456938 2472 ntTSL 1 (best) BASIC5.29□□□□□ -1.56
LHX3Q9UBR4 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC5.28□□□□□ -1.56
LHX3Q9UBR4 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
LHX3Q9UBR4 OR8D4-201ENST00000321355 1331 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
LHX3Q9UBR4 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
LHX3Q9UBR4 LINC00704-201ENST00000430998 1478 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
LHX3Q9UBR4 KIF2A-203ENST00000407818 2315 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
LHX3Q9UBR4 ERVFRD-3-201ENST00000578561 1617 ntBASIC5.28□□□□□ -1.56
LHX3Q9UBR4 RNU6-1331P-201ENST00000363658 106 ntBASIC5.28□□□□□ -1.56
LHX3Q9UBR4 RNU1-74P-201ENST00000384108 171 ntBASIC5.28□□□□□ -1.56
LHX3Q9UBR4 MIR1182-201ENST00000408363 97 ntBASIC5.28□□□□□ -1.56
LHX3Q9UBR4 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.28□□□□□ -1.56
LHX3Q9UBR4 RPS29P10-201ENST00000439197 166 ntBASIC5.28□□□□□ -1.56
LHX3Q9UBR4 REG1CP-206ENST00000447469 496 ntBASIC5.28□□□□□ -1.56
LHX3Q9UBR4 AC000124.1-201ENST00000448311 957 ntTSL 2 BASIC5.28□□□□□ -1.56
LHX3Q9UBR4 LINC01765-201ENST00000448680 491 ntTSL 2 BASIC5.28□□□□□ -1.56
LHX3Q9UBR4 OR6C72P-201ENST00000451403 892 ntBASIC5.28□□□□□ -1.56
LHX3Q9UBR4 RN7SL189P-201ENST00000468631 289 ntBASIC5.28□□□□□ -1.56
LHX3Q9UBR4 APOPT1-204ENST00000473127 739 ntTSL 3 BASIC5.28□□□□□ -1.56
LHX3Q9UBR4 C21orf62-202ENST00000479548 964 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
LHX3Q9UBR4 AC004815.1-201ENST00000484185 331 ntBASIC5.28□□□□□ -1.56
LHX3Q9UBR4 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC5.28□□□□□ -1.56
LHX3Q9UBR4 JCHAIN-204ENST00000510437 640 ntAPPRIS P1 TSL 3 BASIC5.28□□□□□ -1.56
LHX3Q9UBR4 AC010451.2-201ENST00000511514 545 ntTSL 4 BASIC5.28□□□□□ -1.56
LHX3Q9UBR4 AC008695.1-201ENST00000514667 6393 ntAPPRIS P1 TSL 2 BASIC5.28□□□□□ -1.56
LHX3Q9UBR4 SNHG1-204ENST00000537068 629 ntTSL 5 BASIC5.28□□□□□ -1.56
LHX3Q9UBR4 AC092944.2-201ENST00000605443 889 ntBASIC5.28□□□□□ -1.56
LHX3Q9UBR4 AL139407.1-201ENST00000613826 1175 ntBASIC5.28□□□□□ -1.56
LHX3Q9UBR4 AC135068.12-201ENST00000637370 931 ntBASIC5.28□□□□□ -1.56
LHX3Q9UBR4 SAMMSON-227ENST00000642114 1199 ntBASIC5.28□□□□□ -1.56
LHX3Q9UBR4 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
LHX3Q9UBR4 AC092111.2-201ENST00000611627 1414 ntBASIC5.28□□□□□ -1.56
LHX3Q9UBR4 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.28□□□□□ -1.56
LHX3Q9UBR4 AL121839.2-201ENST00000565058 6943 ntBASIC5.28□□□□□ -1.56
LHX3Q9UBR4 FBXO3-208ENST00000530401 7410 ntTSL 2 BASIC5.28□□□□□ -1.56
LHX3Q9UBR4 SLC1A2-203ENST00000395753 11689 ntAPPRIS ALT1 TSL 2 BASIC5.28□□□□□ -1.56
LHX3Q9UBR4 FRAS1-207ENST00000512123 15624 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
LHX3Q9UBR4 ZFX-211ENST00000539115 6801 ntTSL 1 (best) BASIC5.28□□□□□ -1.56
LHX3Q9UBR4 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC5.28□□□□□ -1.56
LHX3Q9UBR4 SAMM50P1-201ENST00000455403 1399 ntBASIC5.28□□□□□ -1.56
LHX3Q9UBR4 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC5.28□□□□□ -1.56
LHX3Q9UBR4 AC006210.2-201ENST00000367074 1545 ntBASIC5.28□□□□□ -1.56
LHX3Q9UBR4 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.28□□□□□ -1.56
LHX3Q9UBR4 NTRK3-205ENST00000394480 19984 ntAPPRIS P3 TSL 5 BASIC5.28□□□□□ -1.56
LHX3Q9UBR4 NCOA4P2-201ENST00000340589 1813 ntBASIC5.27□□□□□ -1.57
LHX3Q9UBR4 MRPL35-202ENST00000337109 3727 ntAPPRIS P4 TSL 1 (best) BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 NAV2-AS5-201ENST00000528726 3307 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 ZSCAN4-201ENST00000318203 2246 ntAPPRIS P1 TSL 2 BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 LGALSL-202ENST00000409537 3298 ntTSL 5 BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 DYNAP-201ENST00000321600 2027 ntAPPRIS P3 TSL 2 BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 OR1L6-202ENST00000373684 1044 ntBASIC5.27□□□□□ -1.57
LHX3Q9UBR4 RCAN3-201ENST00000374393 382 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 AMELX-202ENST00000380712 835 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 AMELX-203ENST00000380714 793 ntAPPRIS P1 TSL 1 (best) BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 MIR600-201ENST00000385007 98 ntBASIC5.27□□□□□ -1.57
LHX3Q9UBR4 SNORA48.4-201ENST00000391089 134 ntBASIC5.27□□□□□ -1.57
LHX3Q9UBR4 OR8V1P-201ENST00000395193 873 ntBASIC5.27□□□□□ -1.57
LHX3Q9UBR4 U3.36-201ENST00000408418 213 ntBASIC5.27□□□□□ -1.57
LHX3Q9UBR4 RNU6ATAC21P-201ENST00000408656 126 ntBASIC5.27□□□□□ -1.57
LHX3Q9UBR4 RNU4-34P-201ENST00000410431 124 ntBASIC5.27□□□□□ -1.57
LHX3Q9UBR4 AC098592.2-201ENST00000413158 265 ntBASIC5.27□□□□□ -1.57
LHX3Q9UBR4 ATP6V1G1P7-201ENST00000415853 349 ntBASIC5.27□□□□□ -1.57
LHX3Q9UBR4 AC079760.2-203ENST00000418395 489 ntTSL 3 BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 LINC00317-201ENST00000419069 612 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 AL390036.1-201ENST00000419428 734 ntTSL 5 BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 DEFB122-201ENST00000433453 499 ntTSL 1 (best) BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 AL627308.1-201ENST00000435693 821 ntBASIC5.27□□□□□ -1.57
LHX3Q9UBR4 ZNF733P-202ENST00000444809 1573 ntBASIC5.27□□□□□ -1.57
LHX3Q9UBR4 AL139121.1-201ENST00000445647 244 ntTSL 2 BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 RN7SL515P-201ENST00000463999 297 ntBASIC5.27□□□□□ -1.57
LHX3Q9UBR4 PLGLA-202ENST00000482249 475 ntTSL 3 BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 LINC01340-201ENST00000504012 724 ntTSL 3 BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 SUMO2P4-201ENST00000504193 276 ntBASIC5.27□□□□□ -1.57
LHX3Q9UBR4 ATG10-208ENST00000513634 618 ntTSL 2 BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 WDYHV1-203ENST00000518125 880 ntTSL 2 BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 BMPR1APS2-201ENST00000527904 1012 ntBASIC5.27□□□□□ -1.57
LHX3Q9UBR4 AC022832.1-201ENST00000530718 645 ntBASIC5.27□□□□□ -1.57
LHX3Q9UBR4 TRAV11-201ENST00000539512 339 ntBASIC5.27□□□□□ -1.57
LHX3Q9UBR4 AC105020.2-201ENST00000564683 572 ntTSL 5 BASIC5.27□□□□□ -1.57
LHX3Q9UBR4 MIR3691-201ENST00000578066 90 ntBASIC5.27□□□□□ -1.57
Retrieved 100 of 98,524 protein–RNA pairs in 96.6 ms