Protein–RNA interactions for Protein: Q9BWF2

TRAIP, E3 ubiquitin-protein ligase TRAIP, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAIPQ9BWF2 OR52E6-201ENST00000329322 970 ntAPPRIS P1 BASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 PTPRC-202ENST00000367364 1017 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 MCTS1-202ENST00000371317 1018 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 FABP3-201ENST00000373713 725 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 TXNDC8-202ENST00000374510 455 ntAPPRIS P2 TSL 1 (best) BASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 MTIF3-203ENST00000405591 889 ntAPPRIS P1 TSL 1 (best) BASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 AL033519.1-201ENST00000407266 307 ntBASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 SNX10-204ENST00000409838 944 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 PRELID3BP11-201ENST00000414230 479 ntBASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 AP000550.2-201ENST00000417463 774 ntTSL 5 BASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 AL121759.1-202ENST00000425746 387 ntTSL 3 BASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 CYP4F32P-201ENST00000426492 504 ntBASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 RPP40P1-201ENST00000426762 456 ntBASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 AL590999.1-204ENST00000430595 638 ntTSL 3 BASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 AP000552.3-201ENST00000434730 775 ntTSL 5 BASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 HMGN1P6-201ENST00000438508 291 ntBASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 MTND1P30-201ENST00000441241 901 ntBASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 LINC00973-201ENST00000473756 962 ntTSL 2 BASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 AC092924.1-201ENST00000496084 487 ntTSL 4 BASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 RN7SL143P-201ENST00000496780 297 ntBASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 AC027627.1-201ENST00000506895 753 ntTSL 3 BASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 LINC02465-201ENST00000507099 532 ntTSL 4 BASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 AC079380.1-201ENST00000507844 619 ntTSL 3 BASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 SUMO2P7-201ENST00000511179 285 ntBASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 SNORA48.10-201ENST00000516965 160 ntBASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 LINC01484-201ENST00000517733 555 ntTSL 4 BASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 HPS5-207ENST00000537258 1275 ntTSL 5 BASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 AL133163.3-201ENST00000556448 504 ntTSL 5 BASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 AC026462.3-201ENST00000565153 557 ntTSL 2 BASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 ZNF137P-202ENST00000597158 308 ntTSL 3 BASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 AC018714.1-201ENST00000605028 208 ntBASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 SAMD12-AS1-201ENST00000625758 718 ntTSL 5 BASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 TEX41-256ENST00000626411 368 ntTSL 5 BASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 AC183089.2-201ENST00000637931 916 ntBASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 AP002800.1-201ENST00000624982 2225 ntBASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 NBPF9-205ENST00000613595 4527 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 CNOT4-206ENST00000428680 4642 ntTSL 1 (best) BASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 ACOD1-202ENST00000449753 2097 ntAPPRIS ALT2 TSL 3 BASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 SORBS1-205ENST00000371227 7279 ntAPPRIS ALT2 TSL 1 (best) BASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 NIN-217ENST00000530997 8368 ntAPPRIS P5 TSL 5 BASIC7.53□□□□□ -1.2
TRAIPQ9BWF2 ATP5A1P1-201ENST00000454088 1321 ntBASIC7.52□□□□□ -1.2
TRAIPQ9BWF2 OR5BR1P-201ENST00000524992 1330 ntBASIC7.52□□□□□ -1.2
TRAIPQ9BWF2 PPP2R5C-226ENST00000557095 1307 ntTSL 1 (best) BASIC7.52□□□□□ -1.2
TRAIPQ9BWF2 PPP1R1C-201ENST00000280295 1636 ntTSL 1 (best) BASIC7.52□□□□□ -1.2
TRAIPQ9BWF2 ERLIN2-201ENST00000276461 6073 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.2
TRAIPQ9BWF2 GAPT-201ENST00000318469 2119 ntAPPRIS P1 BASIC7.52□□□□□ -1.2
TRAIPQ9BWF2 VEZF1-204ENST00000584396 2342 ntAPPRIS ALT2 TSL 5 BASIC7.52□□□□□ -1.2
TRAIPQ9BWF2 CUL1-204ENST00000617797 2508 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 CDH17-203ENST00000450165 2625 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 AP001636.3-201ENST00000533954 2810 ntTSL 2 BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 CACNB2-215ENST00000615785 3707 ntTSL 5 BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 PIRT-201ENST00000580256 3810 ntAPPRIS P1 TSL 2 BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 KIAA0391-201ENST00000250377 6118 ntTSL 2 BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 BDNF-212ENST00000525528 4766 ntAPPRIS P1 BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 CSTF3-201ENST00000323959 2797 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 GABRB2-209ENST00000612710 2470 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 GAS2-201ENST00000278187 2170 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 BCL2L14-203ENST00000308721 1897 ntAPPRIS P1 TSL 1 (best) BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 AP005131.1-201ENST00000585366 4745 ntTSL 5 BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 VIM-AS1-201ENST00000437232 1351 ntTSL 2 BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 AC016716.1-201ENST00000265882 708 ntBASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 SDHC-203ENST00000392169 369 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 FCF1P2-201ENST00000415284 583 ntBASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 AC009229.2-201ENST00000417213 351 ntTSL 3 BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 AC012519.1-201ENST00000424588 610 ntBASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 IFNNP1-201ENST00000429219 553 ntBASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 AC244035.1-201ENST00000430042 390 ntBASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 GAPDHP19-201ENST00000431768 1005 ntBASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 AC004470.1-201ENST00000442155 382 ntTSL 5 BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 AL033379.1-201ENST00000442184 481 ntTSL 3 BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 RAB11AP1-201ENST00000442978 646 ntBASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 AL035420.1-202ENST00000450129 357 ntTSL 3 BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 RPL10P17-201ENST00000453852 316 ntBASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 FOXP1-AS1-201ENST00000465742 700 ntTSL 1 (best) BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 RN7SL654P-201ENST00000479178 292 ntBASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 AL117692.1-201ENST00000494283 713 ntBASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 MTERF4-220ENST00000495694 909 ntTSL 5 BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 LINC02513-201ENST00000503465 500 ntTSL 2 BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 RNU6-202P-201ENST00000515998 96 ntBASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 OR5M1-201ENST00000526538 948 ntAPPRIS P1 BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 AC108471.2-204ENST00000526807 784 ntTSL 5 BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 AC090115.2-201ENST00000548060 883 ntBASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 AC123905.1-201ENST00000552098 541 ntTSL 4 BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 AC012404.1-201ENST00000560876 476 ntTSL 3 BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 AC037487.4-201ENST00000577423 625 ntTSL 3 BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 AC138207.8-204ENST00000579588 527 ntBASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 AC006441.1-201ENST00000581083 437 ntTSL 5 BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 AC024267.2-201ENST00000582737 417 ntBASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 AP005057.1-201ENST00000583827 574 ntTSL 4 BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 VN1R92P-201ENST00000598511 928 ntBASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 AC092653.1-201ENST00000608509 531 ntBASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 5S_rRNA.23-201ENST00000612086 102 ntBASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 AL158063.1-201ENST00000615349 536 ntBASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 CNTNAP3P1-201ENST00000616657 906 ntBASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 AL031667.3-201ENST00000620124 655 ntBASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 EDRF1-AS1-214ENST00000622798 526 ntTSL 5 BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 LAMTOR5-AS1-233ENST00000625451 470 ntTSL 5 BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 ARFGAP2-230ENST00000629231 213 ntTSL 5 BASIC7.52□□□□□ -1.21
TRAIPQ9BWF2 AC092574.2-201ENST00000631198 753 ntTSL 3 BASIC7.52□□□□□ -1.21
Retrieved 100 of 98,524 protein–RNA pairs in 118.9 ms