Protein–RNA interactions for Protein: Q96RL7

VPS13A, Vacuolar protein sorting-associated protein 13A, humanhuman

Predictions only

Length 3,174 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13AQ96RL7 MCM10-202ENST00000378714 4547 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 TMEM68-219ENST00000617977 4512 ntTSL 5 BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 MMP12-201ENST00000571244 1874 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 SNORD56.6-201ENST00000384569 71 ntBASIC4.86□□□□□ -1.63
VPS13AQ96RL7 SNX24-202ENST00000395451 1050 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 YWHAZP2-201ENST00000440317 728 ntBASIC4.86□□□□□ -1.63
VPS13AQ96RL7 AC007016.1-201ENST00000512110 244 ntBASIC4.86□□□□□ -1.63
VPS13AQ96RL7 RPS4XP16-203ENST00000596904 698 ntTSL 5 BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 AC004777.1-201ENST00000624317 287 ntBASIC4.86□□□□□ -1.63
VPS13AQ96RL7 THRB-202ENST00000356447 6345 ntAPPRIS P2 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 NOL8-208ENST00000442668 4281 ntAPPRIS P3 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 PTPRO-210ENST00000544244 3978 ntAPPRIS ALT2 TSL 2 BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 ACTR3BP2-202ENST00000623630 1338 ntBASIC4.86□□□□□ -1.63
VPS13AQ96RL7 EBLN2-201ENST00000533473 1679 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 CARD8-202ENST00000391898 5263 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 PIGW-206ENST00000620233 2264 ntAPPRIS P1 TSL 2 BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 ABCA9-201ENST00000340001 6514 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 URB1-201ENST00000382751 10832 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 AC239803.1-202ENST00000432038 590 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 AL162591.2-201ENST00000449634 317 ntBASIC4.86□□□□□ -1.63
VPS13AQ96RL7 MIR4432HG-202ENST00000453476 703 ntTSL 3 BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 LINC02408-202ENST00000538573 559 ntTSL 4 BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 AC010197.1-201ENST00000541860 578 ntTSL 4 BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 RN7SL176P-201ENST00000580352 264 ntBASIC4.86□□□□□ -1.63
VPS13AQ96RL7 AP003400.2-201ENST00000624036 666 ntBASIC4.86□□□□□ -1.63
VPS13AQ96RL7 AC130448.2-201ENST00000624082 374 ntBASIC4.86□□□□□ -1.63
VPS13AQ96RL7 RPS4Y2-201ENST00000629237 792 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
VPS13AQ96RL7 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 AASDH-203ENST00000502617 3004 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 ZNF615-201ENST00000376716 4048 ntAPPRIS P3 TSL 2 BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 HEPH-209ENST00000519389 6013 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 GLYATL1-201ENST00000300079 2068 ntAPPRIS P3 TSL 2 BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 OR52K1-202ENST00000641528 5456 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 BMPR1A-201ENST00000372037 11255 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 SOD2-211ENST00000538183 14266 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 RIPOR2-208ENST00000613507 5539 ntAPPRIS P4 TSL 5 BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 SIAH3-201ENST00000400405 7057 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 TRPS1-212ENST00000640765 9514 ntTSL 2 BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 DSCR8-201ENST00000357704 552 ntAPPRIS P5 TSL 2 BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 TRAV35-201ENST00000390462 330 ntBASIC4.85□□□□□ -1.63
VPS13AQ96RL7 HYALP1-201ENST00000417674 1279 ntBASIC4.85□□□□□ -1.63
VPS13AQ96RL7 HSFY6P-201ENST00000445573 403 ntBASIC4.85□□□□□ -1.63
VPS13AQ96RL7 AL157938.2-204ENST00000589667 826 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 ZNF43-209ENST00000598288 560 ntTSL 4 BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 AL353729.2-201ENST00000605859 1249 ntBASIC4.85□□□□□ -1.63
VPS13AQ96RL7 AC087821.1-201ENST00000623639 567 ntBASIC4.85□□□□□ -1.63
VPS13AQ96RL7 UTP15-208ENST00000543251 4922 ntTSL 2 BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 TCF4-278ENST00000636400 8343 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 TMCC1-202ENST00000426664 5484 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 CEACAM5-202ENST00000398599 2451 ntAPPRIS ALT2 TSL 5 BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 HHIP-201ENST00000296575 10072 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 TP53BP1-201ENST00000263801 6346 ntAPPRIS P3 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 MCM10-201ENST00000378694 4587 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 TRDC-201ENST00000390477 720 ntAPPRIS P1 BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 SNORA48.4-201ENST00000391089 134 ntBASIC4.85□□□□□ -1.63
VPS13AQ96RL7 AL358176.3-201ENST00000420757 454 ntBASIC4.85□□□□□ -1.63
VPS13AQ96RL7 VAV3-AS1-201ENST00000438318 619 ntTSL 2 BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 RN7SL303P-201ENST00000469773 251 ntBASIC4.85□□□□□ -1.63
VPS13AQ96RL7 ECM1P2-201ENST00000503354 1577 ntBASIC4.85□□□□□ -1.63
VPS13AQ96RL7 LINC02014-201ENST00000514010 713 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 GABARAPL1-212ENST00000543602 653 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 CCNG2P1-201ENST00000549521 1000 ntBASIC4.85□□□□□ -1.63
VPS13AQ96RL7 AC008770.4-201ENST00000586394 468 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 AC004596.1-201ENST00000586560 528 ntTSL 3 BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 DCUN1D1-201ENST00000292782 7954 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 MAP3K7-203ENST00000369327 4558 ntTSL 1 (best) BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 CAV1-205ENST00000405348 2443 ntAPPRIS ALT1 TSL 5 BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 TRPM8-201ENST00000324695 5621 ntAPPRIS P1 TSL 1 (best) BASIC4.85□□□□□ -1.63
VPS13AQ96RL7 KATNAL1-201ENST00000380615 7551 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
VPS13AQ96RL7 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
VPS13AQ96RL7 AL355916.1-202ENST00000508827 5103 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
VPS13AQ96RL7 FZD10-AS1-201ENST00000505807 10193 ntTSL 2 BASIC4.84□□□□□ -1.63
VPS13AQ96RL7 CTNND1-219ENST00000528621 5907 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
VPS13AQ96RL7 ZNF24-202ENST00000399061 6282 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.63
VPS13AQ96RL7 AC079922.1-201ENST00000443291 359 ntBASIC4.84□□□□□ -1.63
VPS13AQ96RL7 KCNQ5-IT1-201ENST00000445310 563 ntTSL 2 BASIC4.84□□□□□ -1.63
VPS13AQ96RL7 AC108751.3-201ENST00000461814 1020 ntBASIC4.84□□□□□ -1.63
VPS13AQ96RL7 UGT2B26P-201ENST00000508672 1613 ntBASIC4.84□□□□□ -1.63
VPS13AQ96RL7 SAMMSON-210ENST00000641260 1308 ntBASIC4.84□□□□□ -1.63
VPS13AQ96RL7 CSDE1-205ENST00000438362 4167 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
VPS13AQ96RL7 RAPGEF4-213ENST00000535187 3707 ntTSL 2 BASIC4.84□□□□□ -1.63
VPS13AQ96RL7 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC4.84□□□□□ -1.63
VPS13AQ96RL7 OR2M7-201ENST00000317965 939 ntAPPRIS P1 BASIC4.84□□□□□ -1.63
VPS13AQ96RL7 SNORD8-201ENST00000363915 110 ntBASIC4.84□□□□□ -1.63
VPS13AQ96RL7 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC4.84□□□□□ -1.63
VPS13AQ96RL7 AC091959.2-201ENST00000477363 321 ntBASIC4.84□□□□□ -1.63
VPS13AQ96RL7 RPS27AP16-201ENST00000492222 470 ntBASIC4.84□□□□□ -1.63
VPS13AQ96RL7 OR2A3P-201ENST00000493774 953 ntBASIC4.84□□□□□ -1.63
VPS13AQ96RL7 NPM1P6-201ENST00000521088 871 ntBASIC4.84□□□□□ -1.63
VPS13AQ96RL7 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC4.84□□□□□ -1.63
VPS13AQ96RL7 AC006270.1-201ENST00000582889 478 ntTSL 3 BASIC4.84□□□□□ -1.63
VPS13AQ96RL7 H3F3BP2-201ENST00000583907 357 ntBASIC4.84□□□□□ -1.63
VPS13AQ96RL7 MIR492-201ENST00000638676 116 ntBASIC4.84□□□□□ -1.63
VPS13AQ96RL7 AQP9-201ENST00000219919 3034 ntAPPRIS P1 TSL 1 (best) BASIC4.84□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 92.6 ms