Protein–RNA interactions for Protein: Q8NEF3

CCDC112, Coiled-coil domain-containing protein 112, humanhuman

Predictions only

Length 446 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC112Q8NEF3 LINC02047-201ENST00000494761 1371 ntTSL 1 (best) BASIC5.8□□□□□ -1.48
CCDC112Q8NEF3 KLRC4-KLRK1-201ENST00000539300 1507 ntAPPRIS P5 TSL 2 BASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 AC020633.1-201ENST00000468439 2247 ntBASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 DNAAF4-CCPG1-201ENST00000565113 4589 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 MPHOSPH9-211ENST00000541076 6136 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 OR9A2-201ENST00000350513 1038 ntAPPRIS P1 BASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 RNA5SP223-201ENST00000365174 120 ntBASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 AC245060.4-201ENST00000413293 1121 ntBASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 OR6C64P-201ENST00000419708 825 ntBASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 AC092634.4-201ENST00000419937 423 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 HMGB3P24-201ENST00000433260 622 ntBASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 AL731574.1-201ENST00000447757 456 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 CD200R1L-202ENST00000448932 750 ntAPPRIS ALT2 TSL 5 BASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 AL672138.1-201ENST00000450604 1015 ntBASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 AL359265.3-201ENST00000456125 579 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 AC079168.1-201ENST00000458741 345 ntBASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 AL136038.1-201ENST00000497246 351 ntBASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 LINC02147-201ENST00000509367 807 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 LIAS-205ENST00000509519 1005 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 GYPB-213ENST00000513128 360 ntTSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 AC105031.1-201ENST00000518550 476 ntBASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 PKIA-AS1-201ENST00000519242 995 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 AC007601.2-201ENST00000566957 502 ntTSL 3 BASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 DARS-AS1-217ENST00000599279 544 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 RN7SL544P-201ENST00000617232 284 ntBASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 MIR6886-201ENST00000619864 61 ntBASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 RN7SL763P-201ENST00000620922 284 ntBASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 AC068631.1-223ENST00000625877 472 ntTSL 5 BASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 AL049767.1-202ENST00000637826 242 ntBASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 CCPG1-202ENST00000425574 1945 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 SMARCA2-206ENST00000382185 1584 ntTSL 2 BASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 PEX2-201ENST00000357039 4317 ntAPPRIS P1 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 KLHL13-201ENST00000262820 3972 ntAPPRIS P3 TSL 1 (best) BASIC5.79□□□□□ -1.48
CCDC112Q8NEF3 DNAH7-202ENST00000409063 1845 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 CROT-204ENST00000442291 1993 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 MRE11P1-201ENST00000464884 2127 ntBASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 MPDZ-204ENST00000381022 7589 ntAPPRIS ALT2 TSL 5 BASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 CNKSR2-202ENST00000379510 5315 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 AC063976.2-201ENST00000425667 3556 ntBASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 GRIK2-201ENST00000318991 4317 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 OR6K2-201ENST00000359610 975 ntAPPRIS P1 BASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 RN7SKP292-201ENST00000365522 317 ntBASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 OR7E101P-201ENST00000400428 513 ntBASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 TANK-203ENST00000402568 878 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 LSM5-203ENST00000409782 649 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 RMRPP5-201ENST00000411156 267 ntBASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 RN7SKP293-201ENST00000411389 296 ntBASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 OR2AT2P-201ENST00000413438 905 ntBASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 AC113412.1-201ENST00000425840 504 ntBASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 CYP1B1-AS1-202ENST00000427168 484 ntTSL 4 BASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 AL732323.1-201ENST00000445897 456 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 MRPL35P2-201ENST00000448009 511 ntBASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 VDAC2P4-201ENST00000452925 711 ntBASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 GSTM1-206ENST00000483399 512 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 RN7SL591P-201ENST00000496150 292 ntBASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 AC098869.2-201ENST00000514187 862 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 SNORA70.20-201ENST00000516848 126 ntBASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 AC104212.3-201ENST00000522044 444 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 AC007225.2-201ENST00000562529 256 ntBASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 AC015845.1-202ENST00000580184 242 ntTSL 3 BASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 AC011626.1-201ENST00000604710 562 ntBASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 ATP13A3-211ENST00000619199 5227 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 UBE4A-203ENST00000545354 2149 ntTSL 2 BASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 AFTPH-204ENST00000409933 2811 ntAPPRIS ALT1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 ZNF445-201ENST00000396077 18299 ntAPPRIS P1 TSL 1 (best) BASIC5.78□□□□□ -1.48
CCDC112Q8NEF3 FGG-205ENST00000407946 1636 ntTSL 5 BASIC5.77□□□□□ -1.48
CCDC112Q8NEF3 PDE10A-201ENST00000366882 8233 ntAPPRIS P3 TSL 5 BASIC5.77□□□□□ -1.49
CCDC112Q8NEF3 AC083843.3-201ENST00000623679 2186 ntBASIC5.77□□□□□ -1.49
CCDC112Q8NEF3 ANKRD36B-202ENST00000359901 4297 ntAPPRIS P1 TSL 5 BASIC5.77□□□□□ -1.49
CCDC112Q8NEF3 CIR1P2-201ENST00000514821 1342 ntBASIC5.77□□□□□ -1.49
CCDC112Q8NEF3 PCDH15-214ENST00000395446 3948 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC112Q8NEF3 LINC01355-201ENST00000566551 5444 ntBASIC5.77□□□□□ -1.49
CCDC112Q8NEF3 IFIT1B-201ENST00000371809 1972 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
CCDC112Q8NEF3 MIR375-201ENST00000362103 64 ntBASIC5.77□□□□□ -1.49
CCDC112Q8NEF3 RPL6P21-201ENST00000418672 846 ntBASIC5.77□□□□□ -1.49
CCDC112Q8NEF3 RPL34P3-201ENST00000421454 338 ntBASIC5.77□□□□□ -1.49
CCDC112Q8NEF3 AC079355.1-201ENST00000421770 223 ntBASIC5.77□□□□□ -1.49
CCDC112Q8NEF3 AC010737.1-201ENST00000426699 559 ntTSL 2 BASIC5.77□□□□□ -1.49
CCDC112Q8NEF3 AC015923.1-201ENST00000435892 305 ntTSL 2 BASIC5.77□□□□□ -1.49
CCDC112Q8NEF3 AC062032.1-201ENST00000436245 355 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC112Q8NEF3 RPL36AP39-201ENST00000445859 318 ntBASIC5.77□□□□□ -1.49
CCDC112Q8NEF3 YWHAEP1-201ENST00000453697 763 ntBASIC5.77□□□□□ -1.49
CCDC112Q8NEF3 RPS23P6-201ENST00000466136 431 ntBASIC5.77□□□□□ -1.49
CCDC112Q8NEF3 RN7SL447P-201ENST00000494711 245 ntBASIC5.77□□□□□ -1.49
CCDC112Q8NEF3 RN7SKP46-201ENST00000515942 234 ntBASIC5.77□□□□□ -1.49
CCDC112Q8NEF3 CYCSP22-201ENST00000517555 339 ntBASIC5.77□□□□□ -1.49
CCDC112Q8NEF3 PFDN1-207ENST00000524074 395 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC112Q8NEF3 AP001085.1-201ENST00000524441 639 ntTSL 2 BASIC5.77□□□□□ -1.49
CCDC112Q8NEF3 RN7SL708P-201ENST00000580952 299 ntBASIC5.77□□□□□ -1.49
CCDC112Q8NEF3 AC129510.2-201ENST00000582774 345 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC112Q8NEF3 AC010463.2-201ENST00000597592 661 ntTSL 5 BASIC5.77□□□□□ -1.49
CCDC112Q8NEF3 PPATP2-201ENST00000605635 508 ntBASIC5.77□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 97 ms