Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 SNX10-202ENST00000396376 2491 ntAPPRIS P2 TSL 1 (best) BASIC5□□□□□ -1.61
COL5A1P20908 PRR4-201ENST00000228811 563 ntAPPRIS P3 TSL 1 (best) BASIC5□□□□□ -1.61
COL5A1P20908 AC135895.1-201ENST00000360528 1058 ntTSL 5 BASIC5□□□□□ -1.61
COL5A1P20908 OR8V1P-201ENST00000395193 873 ntBASIC5□□□□□ -1.61
COL5A1P20908 LINC01047-201ENST00000415193 778 ntTSL 5 BASIC5□□□□□ -1.61
COL5A1P20908 AL359633.2-201ENST00000415787 622 ntTSL 1 (best) BASIC5□□□□□ -1.61
COL5A1P20908 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC5□□□□□ -1.61
COL5A1P20908 OR2AM1P-201ENST00000422137 422 ntBASIC5□□□□□ -1.61
COL5A1P20908 DNAJC19P7-201ENST00000428811 344 ntBASIC5□□□□□ -1.61
COL5A1P20908 AL353689.2-201ENST00000433837 440 ntTSL 3 BASIC5□□□□□ -1.61
COL5A1P20908 RPS29P10-201ENST00000439197 166 ntBASIC5□□□□□ -1.61
COL5A1P20908 AL512380.1-202ENST00000447728 543 ntTSL 5 BASIC5□□□□□ -1.61
COL5A1P20908 HMGN2P25-201ENST00000486956 268 ntBASIC5□□□□□ -1.61
COL5A1P20908 LINC02215-201ENST00000503320 543 ntTSL 4 BASIC5□□□□□ -1.61
COL5A1P20908 AC079921.1-201ENST00000509449 946 ntTSL 3 BASIC5□□□□□ -1.61
COL5A1P20908 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5□□□□□ -1.61
COL5A1P20908 GCSHP4-201ENST00000538792 439 ntBASIC5□□□□□ -1.61
COL5A1P20908 PRR4-206ENST00000540107 388 ntAPPRIS ALT2 TSL 3 BASIC5□□□□□ -1.61
COL5A1P20908 AP001542.3-201ENST00000587619 527 ntTSL 5 BASIC5□□□□□ -1.61
COL5A1P20908 BNIP3P22-201ENST00000593399 556 ntBASIC5□□□□□ -1.61
COL5A1P20908 LINC01198-207ENST00000598084 881 ntTSL 5 BASIC5□□□□□ -1.61
COL5A1P20908 CNOT1-216ENST00000569240 7660 ntAPPRIS ALT1 TSL 1 (best) BASIC5□□□□□ -1.61
COL5A1P20908 BNIP3L-202ENST00000518611 1352 ntTSL 2 BASIC4.99□□□□□ -1.61
COL5A1P20908 MTRNR2L6-201ENST00000604952 1447 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
COL5A1P20908 AMOT-203ENST00000371959 7319 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL5A1P20908 ZNF766-201ENST00000439461 6298 ntAPPRIS P2 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL5A1P20908 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC4.99□□□□□ -1.61
COL5A1P20908 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC4.99□□□□□ -1.61
COL5A1P20908 AC037459.2-201ENST00000514980 4076 ntTSL 2 BASIC4.99□□□□□ -1.61
COL5A1P20908 AC144833.1-201ENST00000567953 4089 ntBASIC4.99□□□□□ -1.61
COL5A1P20908 FOXP2-203ENST00000378237 2187 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL5A1P20908 N4BP2-201ENST00000261435 9744 ntAPPRIS P1 TSL 5 BASIC4.99□□□□□ -1.61
COL5A1P20908 TEDDM1-201ENST00000367565 2500 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
COL5A1P20908 PMFBP1-207ENST00000537465 3935 ntAPPRIS ALT2 TSL 2 BASIC4.99□□□□□ -1.61
COL5A1P20908 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL5A1P20908 ELSPBP1-201ENST00000339841 1052 ntAPPRIS P2 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL5A1P20908 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL5A1P20908 KCNIP4-202ENST00000382148 2481 ntAPPRIS ALT1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL5A1P20908 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC4.99□□□□□ -1.61
COL5A1P20908 CHEK2P3-201ENST00000416118 248 ntBASIC4.99□□□□□ -1.61
COL5A1P20908 AC006369.1-201ENST00000419425 548 ntTSL 3 BASIC4.99□□□□□ -1.61
COL5A1P20908 RSL24D1P6-201ENST00000426934 401 ntBASIC4.99□□□□□ -1.61
COL5A1P20908 RPL5P25-201ENST00000441148 775 ntBASIC4.99□□□□□ -1.61
COL5A1P20908 EDA2R-204ENST00000451436 3464 ntAPPRIS P3 TSL 5 BASIC4.99□□□□□ -1.61
COL5A1P20908 PTCHD1-AS-201ENST00000455399 718 ntTSL 3 BASIC4.99□□□□□ -1.61
COL5A1P20908 AC104119.1-201ENST00000508829 339 ntTSL 5 BASIC4.99□□□□□ -1.61
COL5A1P20908 AC026719.2-201ENST00000515656 295 ntTSL 3 BASIC4.99□□□□□ -1.61
COL5A1P20908 SCARNA9-201ENST00000530422 353 ntBASIC4.99□□□□□ -1.61
COL5A1P20908 AP005436.3-201ENST00000532849 572 ntTSL 5 BASIC4.99□□□□□ -1.61
COL5A1P20908 RIMKLB-207ENST00000538135 5392 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL5A1P20908 LIMA1-203ENST00000547825 3920 ntAPPRIS ALT2 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL5A1P20908 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC4.99□□□□□ -1.61
COL5A1P20908 AGBL1-AS1-203ENST00000566878 865 ntTSL 3 BASIC4.99□□□□□ -1.61
COL5A1P20908 GAPLINC-202ENST00000579007 643 ntTSL 3 BASIC4.99□□□□□ -1.61
COL5A1P20908 AL139124.1-201ENST00000609123 421 ntBASIC4.99□□□□□ -1.61
COL5A1P20908 AL161616.1-201ENST00000611867 286 ntBASIC4.99□□□□□ -1.61
COL5A1P20908 PAK3-213ENST00000620137 2130 ntTSL 5 BASIC4.99□□□□□ -1.61
COL5A1P20908 AC003973.3-201ENST00000624863 2822 ntBASIC4.99□□□□□ -1.61
COL5A1P20908 AC091046.3-201ENST00000631455 1574 ntBASIC4.99□□□□□ -1.61
COL5A1P20908 LINC02397-201ENST00000504409 10626 ntTSL 1 (best) BASIC4.99□□□□□ -1.61
COL5A1P20908 FBXO25-204ENST00000382824 10386 ntAPPRIS P4 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL5A1P20908 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL5A1P20908 TRIQK-214ENST00000521988 3672 ntAPPRIS P1 TSL 1 (best) BASIC4.99□□□□□ -1.61
COL5A1P20908 ORC4-214ENST00000535373 6710 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
COL5A1P20908 INO80D-201ENST00000403263 14136 ntAPPRIS P1 TSL 5 BASIC4.98□□□□□ -1.61
COL5A1P20908 BLM-201ENST00000355112 5258 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL5A1P20908 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL5A1P20908 RPL7-204ENST00000396467 1526 ntTSL 3 BASIC4.98□□□□□ -1.61
COL5A1P20908 LINC02523-201ENST00000423208 2963 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL5A1P20908 IRAK4-203ENST00000448290 1381 ntTSL 5 BASIC4.98□□□□□ -1.61
COL5A1P20908 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC4.98□□□□□ -1.61
COL5A1P20908 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
COL5A1P20908 OR5AN1-201ENST00000313940 1037 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
COL5A1P20908 FHIT-201ENST00000341848 174 ntTSL 3 BASIC4.98□□□□□ -1.61
COL5A1P20908 ZNRF3-IT1-201ENST00000412798 674 ntTSL 5 BASIC4.98□□□□□ -1.61
COL5A1P20908 AC119751.6-201ENST00000416712 186 ntBASIC4.98□□□□□ -1.61
COL5A1P20908 AL159174.1-202ENST00000425588 442 ntTSL 3 BASIC4.98□□□□□ -1.61
COL5A1P20908 AC007559.1-201ENST00000428736 355 ntBASIC4.98□□□□□ -1.61
COL5A1P20908 HSPD1P12-201ENST00000429127 1069 ntBASIC4.98□□□□□ -1.61
COL5A1P20908 AC124944.2-201ENST00000429866 1242 ntBASIC4.98□□□□□ -1.61
COL5A1P20908 RPS24P16-201ENST00000497294 392 ntBASIC4.98□□□□□ -1.61
COL5A1P20908 LINC02223-202ENST00000511596 578 ntTSL 5 BASIC4.98□□□□□ -1.61
COL5A1P20908 RGS5-219ENST00000528019 512 ntTSL 4 BASIC4.98□□□□□ -1.61
COL5A1P20908 LINC02327-203ENST00000550122 738 ntTSL 2 BASIC4.98□□□□□ -1.61
COL5A1P20908 AC138360.1-201ENST00000552332 386 ntTSL 3 BASIC4.98□□□□□ -1.61
COL5A1P20908 OR11H2-201ENST00000556246 948 ntAPPRIS P1 BASIC4.98□□□□□ -1.61
COL5A1P20908 DIAPH2-AS1-204ENST00000579945 974 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL5A1P20908 MIR7853-201ENST00000584820 132 ntBASIC4.98□□□□□ -1.61
COL5A1P20908 AL020997.2-201ENST00000602607 184 ntBASIC4.98□□□□□ -1.61
COL5A1P20908 PCBP1-AS1-278ENST00000625518 864 ntTSL 5 BASIC4.98□□□□□ -1.61
COL5A1P20908 ZNF420-202ENST00000337995 3535 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL5A1P20908 ZNF528-203ENST00000391788 4209 ntTSL 2 BASIC4.98□□□□□ -1.61
COL5A1P20908 C18orf54-202ENST00000382911 4056 ntTSL 5 BASIC4.98□□□□□ -1.61
COL5A1P20908 BDNF-AS-202ENST00000499568 2039 ntTSL 1 (best) BASIC4.98□□□□□ -1.61
COL5A1P20908 PIK3CB-201ENST00000289153 5919 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL5A1P20908 PATE4-201ENST00000457514 1983 ntAPPRIS P2 TSL 2 BASIC4.98□□□□□ -1.61
COL5A1P20908 GJA9-201ENST00000357771 1799 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
COL5A1P20908 AL117339.4-201ENST00000608335 7063 ntBASIC4.98□□□□□ -1.61
COL5A1P20908 AC004076.2-201ENST00000620532 3323 ntBASIC4.98□□□□□ -1.61
COL5A1P20908 SOCS5-201ENST00000306503 4771 ntAPPRIS P1 TSL 1 (best) BASIC4.98□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 89.9 ms