Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 AC110275.1-201ENST00000534420 623 ntAPPRIS P1 TSL 4 BASIC5.41□□□□□ -1.54
MSH3P20585 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC5.41□□□□□ -1.54
MSH3P20585 ETFRF1-202ENST00000553788 708 ntTSL 3 BASIC5.41□□□□□ -1.54
MSH3P20585 LINC00871-202ENST00000556071 554 ntTSL 3 BASIC5.41□□□□□ -1.54
MSH3P20585 ADAD1P2-201ENST00000588476 646 ntBASIC5.41□□□□□ -1.54
MSH3P20585 ELSPBP1-205ENST00000597519 557 ntTSL 3 BASIC5.41□□□□□ -1.54
MSH3P20585 GMFG-212ENST00000602185 423 ntTSL 3 BASIC5.41□□□□□ -1.54
MSH3P20585 AL356608.1-201ENST00000610034 820 ntBASIC5.41□□□□□ -1.54
MSH3P20585 AC010632.3-201ENST00000611377 369 ntBASIC5.41□□□□□ -1.54
MSH3P20585 MILR1-204ENST00000616498 747 ntAPPRIS ALT2 TSL 1 (best) BASIC5.41□□□□□ -1.54
MSH3P20585 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.41□□□□□ -1.54
MSH3P20585 NPSR1-AS1-202ENST00000419766 4821 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
MSH3P20585 CEP162-207ENST00000617909 5095 ntTSL 5 BASIC5.41□□□□□ -1.54
MSH3P20585 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
MSH3P20585 LINC02060-201ENST00000506041 1626 ntTSL 1 (best) BASIC5.41□□□□□ -1.54
MSH3P20585 ZBED6-202ENST00000550078 12481 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
MSH3P20585 GART-205ENST00000381839 3469 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
MSH3P20585 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.4□□□□□ -1.54
MSH3P20585 RMST-209ENST00000639542 3269 ntTSL 5 BASIC5.4□□□□□ -1.54
MSH3P20585 PROS2P-201ENST00000474651 1951 ntBASIC5.4□□□□□ -1.54
MSH3P20585 ADGRG4-202ENST00000394141 8971 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
MSH3P20585 MAP9-208ENST00000515654 2044 ntTSL 5 BASIC5.4□□□□□ -1.54
MSH3P20585 DNAH5-201ENST00000265104 15633 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.54
MSH3P20585 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC5.4□□□□□ -1.54
MSH3P20585 MYO9A-203ENST00000444904 7749 ntAPPRIS P2 TSL 5 BASIC5.4□□□□□ -1.54
MSH3P20585 OR8H1-201ENST00000313022 1038 ntAPPRIS P2 BASIC5.4□□□□□ -1.54
MSH3P20585 PLIN2-202ENST00000380464 655 ntTSL 2 BASIC5.4□□□□□ -1.54
MSH3P20585 AL589994.1-201ENST00000404962 340 ntBASIC5.4□□□□□ -1.54
MSH3P20585 OR3A2-201ENST00000408891 1076 ntBASIC5.4□□□□□ -1.54
MSH3P20585 GABARAPL3-201ENST00000412799 354 ntBASIC5.4□□□□□ -1.54
MSH3P20585 AC016994.1-201ENST00000425419 552 ntTSL 4 BASIC5.4□□□□□ -1.54
MSH3P20585 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.4□□□□□ -1.54
MSH3P20585 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC5.4□□□□□ -1.54
MSH3P20585 RPL12P17-201ENST00000432393 498 ntBASIC5.4□□□□□ -1.54
MSH3P20585 GSTM5P1-201ENST00000434751 660 ntBASIC5.4□□□□□ -1.54
MSH3P20585 MAPRE1P3-201ENST00000435438 796 ntBASIC5.4□□□□□ -1.54
MSH3P20585 DAZAP2-204ENST00000439799 701 ntTSL 2 BASIC5.4□□□□□ -1.54
MSH3P20585 LINC01422-203ENST00000447149 509 ntTSL 4 BASIC5.4□□□□□ -1.54
MSH3P20585 AC094108.1-201ENST00000502494 527 ntTSL 3 BASIC5.4□□□□□ -1.54
MSH3P20585 MOCS2-205ENST00000508922 1210 ntTSL 5 BASIC5.4□□□□□ -1.54
MSH3P20585 AC021106.1-201ENST00000509020 1058 ntBASIC5.4□□□□□ -1.54
MSH3P20585 LINC02117-201ENST00000513673 540 ntTSL 4 BASIC5.4□□□□□ -1.54
MSH3P20585 RNU4ATAC18P-201ENST00000516179 126 ntBASIC5.4□□□□□ -1.54
MSH3P20585 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC5.4□□□□□ -1.54
MSH3P20585 AL359715.3-201ENST00000569267 2123 ntBASIC5.4□□□□□ -1.54
MSH3P20585 AC100775.1-201ENST00000590942 522 ntTSL 3 BASIC5.4□□□□□ -1.54
MSH3P20585 XIST-210ENST00000602863 775 ntTSL 3 BASIC5.4□□□□□ -1.54
MSH3P20585 AC092474.3-201ENST00000603022 568 ntBASIC5.4□□□□□ -1.54
MSH3P20585 AC015802.5-201ENST00000607478 399 ntBASIC5.4□□□□□ -1.54
MSH3P20585 AC092953.2-201ENST00000608000 699 ntBASIC5.4□□□□□ -1.54
MSH3P20585 AC096586.2-201ENST00000610260 441 ntBASIC5.4□□□□□ -1.54
MSH3P20585 Z95327.3-201ENST00000610385 572 ntBASIC5.4□□□□□ -1.54
MSH3P20585 AC079395.2-201ENST00000610982 737 ntBASIC5.4□□□□□ -1.54
MSH3P20585 AC005840.5-201ENST00000619166 599 ntBASIC5.4□□□□□ -1.54
MSH3P20585 PXT1-202ENST00000619547 619 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.54
MSH3P20585 AC020763.5-201ENST00000623298 430 ntBASIC5.4□□□□□ -1.54
MSH3P20585 AC073869.8-201ENST00000641806 335 ntBASIC5.4□□□□□ -1.54
MSH3P20585 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.55
MSH3P20585 PSMA8-205ENST00000612461 1619 ntTSL 5 BASIC5.4□□□□□ -1.55
MSH3P20585 ZNF280B-201ENST00000613655 3714 ntAPPRIS P1 TSL 5 BASIC5.4□□□□□ -1.55
MSH3P20585 A1CF-207ENST00000395495 9400 ntTSL 5 BASIC5.4□□□□□ -1.55
MSH3P20585 PSG1-201ENST00000244296 2276 ntAPPRIS P3 TSL 1 (best) BASIC5.4□□□□□ -1.55
MSH3P20585 EPPIN-202ENST00000354280 1987 ntAPPRIS P1 TSL 1 (best) BASIC5.4□□□□□ -1.55
MSH3P20585 AP001605.1-201ENST00000420186 2603 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
MSH3P20585 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.4□□□□□ -1.55
MSH3P20585 AL158064.2-203ENST00000639897 2003 ntTSL 5 BASIC5.4□□□□□ -1.55
MSH3P20585 CKAP5-202ENST00000354558 6428 ntTSL 1 (best) BASIC5.4□□□□□ -1.55
MSH3P20585 CYP3A43-204ENST00000354829 1709 ntAPPRIS ALT1 TSL 1 (best) BASIC5.4□□□□□ -1.55
MSH3P20585 AL513548.1-201ENST00000562904 1724 ntBASIC5.4□□□□□ -1.55
MSH3P20585 SRPK2-201ENST00000357311 3700 ntAPPRIS P3 TSL 1 (best) BASIC5.39□□□□□ -1.55
MSH3P20585 EYA4-211ENST00000525849 3456 ntTSL 5 BASIC5.39□□□□□ -1.55
MSH3P20585 PARD3B-212ENST00000613457 7559 ntTSL 5 BASIC5.39□□□□□ -1.55
MSH3P20585 FTO-203ENST00000460382 1517 ntTSL 5 BASIC5.39□□□□□ -1.55
MSH3P20585 IFRD1-217ENST00000621379 3232 ntTSL 2 BASIC5.39□□□□□ -1.55
MSH3P20585 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC5.39□□□□□ -1.55
MSH3P20585 PIK3C3-201ENST00000262039 9443 ntAPPRIS P1 TSL 1 (best) BASIC5.39□□□□□ -1.55
MSH3P20585 RNA5SP234-201ENST00000363916 119 ntBASIC5.39□□□□□ -1.55
MSH3P20585 RNA5SP132-201ENST00000364725 118 ntBASIC5.39□□□□□ -1.55
MSH3P20585 ARL4A-205ENST00000404894 840 ntAPPRIS P1 TSL 2 BASIC5.39□□□□□ -1.55
MSH3P20585 RNU6-564P-201ENST00000410983 104 ntBASIC5.39□□□□□ -1.55
MSH3P20585 ERI3-IT1-201ENST00000414156 619 ntTSL 3 BASIC5.39□□□□□ -1.55
MSH3P20585 AL356806.1-201ENST00000422524 916 ntBASIC5.39□□□□□ -1.55
MSH3P20585 AC018832.1-201ENST00000428171 566 ntTSL 4 BASIC5.39□□□□□ -1.55
MSH3P20585 EIF2S2P3-201ENST00000428356 999 ntBASIC5.39□□□□□ -1.55
MSH3P20585 RPL5P25-201ENST00000441148 775 ntBASIC5.39□□□□□ -1.55
MSH3P20585 AL442224.1-201ENST00000443771 391 ntTSL 2 BASIC5.39□□□□□ -1.55
MSH3P20585 AL672138.1-201ENST00000450604 1015 ntBASIC5.39□□□□□ -1.55
MSH3P20585 LINC01436-201ENST00000457157 1048 ntTSL 2 BASIC5.39□□□□□ -1.55
MSH3P20585 AP006216.2-201ENST00000457746 333 ntTSL 5 BASIC5.39□□□□□ -1.55
MSH3P20585 AP000797.2-201ENST00000475768 606 ntBASIC5.39□□□□□ -1.55
MSH3P20585 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC5.39□□□□□ -1.55
MSH3P20585 TRBV8-1-201ENST00000481590 279 ntBASIC5.39□□□□□ -1.55
MSH3P20585 RN7SL184P-201ENST00000488308 297 ntBASIC5.39□□□□□ -1.55
MSH3P20585 RN7SL547P-201ENST00000490793 290 ntBASIC5.39□□□□□ -1.55
MSH3P20585 CEP170-216ENST00000490813 1070 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
MSH3P20585 RPL37AP8-201ENST00000494116 276 ntBASIC5.39□□□□□ -1.55
MSH3P20585 LINC00632-202ENST00000498732 746 ntTSL 3 BASIC5.39□□□□□ -1.55
MSH3P20585 AC007370.1-201ENST00000503163 316 ntTSL 2 BASIC5.39□□□□□ -1.55
MSH3P20585 HMGB1P44-201ENST00000508597 572 ntBASIC5.39□□□□□ -1.55
MSH3P20585 AC091912.1-201ENST00000511351 248 ntBASIC5.39□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 104.9 ms