Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC5.17□□□□□ -1.58
HOXC4P09017 DDX39BP1-205ENST00000422507 192 ntBASIC5.17□□□□□ -1.58
HOXC4P09017 Z82246.1-201ENST00000428201 457 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXC4P09017 AC008073.2-201ENST00000428344 792 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXC4P09017 VN1R54P-201ENST00000435210 1049 ntBASIC5.17□□□□□ -1.58
HOXC4P09017 RPS29P10-201ENST00000439197 166 ntBASIC5.17□□□□□ -1.58
HOXC4P09017 RPL5P25-201ENST00000441148 775 ntBASIC5.17□□□□□ -1.58
HOXC4P09017 LINC01789-201ENST00000443123 860 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXC4P09017 TRAPPC2-204ENST00000458511 678 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXC4P09017 SLC9A9-AS2-201ENST00000490153 327 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXC4P09017 LINC02508-201ENST00000504165 426 ntTSL 3 BASIC5.17□□□□□ -1.58
HOXC4P09017 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC5.17□□□□□ -1.58
HOXC4P09017 HMGN1P9-201ENST00000515212 298 ntBASIC5.17□□□□□ -1.58
HOXC4P09017 RN7SKP66-201ENST00000516681 231 ntBASIC5.17□□□□□ -1.58
HOXC4P09017 AC107982.2-201ENST00000577360 463 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXC4P09017 AC015845.2-201ENST00000581805 472 ntTSL 2 BASIC5.17□□□□□ -1.58
HOXC4P09017 AC118658.2-201ENST00000618697 459 ntBASIC5.17□□□□□ -1.58
HOXC4P09017 CHMP1B2P-202ENST00000614414 6813 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HOXC4P09017 ADGRL2-206ENST00000370721 5023 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXC4P09017 HHLA2-209ENST00000489514 2406 ntAPPRIS P3 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXC4P09017 ABI2-204ENST00000295851 22209 ntTSL 1 (best) BASIC5.17□□□□□ -1.58
HOXC4P09017 DAZ4-205ENST00000440066 1891 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXC4P09017 DAZ1-206ENST00000620725 1891 ntTSL 5 BASIC5.17□□□□□ -1.58
HOXC4P09017 MID2-202ENST00000443968 2251 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXC4P09017 ZNF571-203ENST00000451802 2265 ntAPPRIS P1 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXC4P09017 AL353796.1-201ENST00000561542 3241 ntBASIC5.17□□□□□ -1.58
HOXC4P09017 PTPRC-209ENST00000442510 5164 ntAPPRIS P4 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXC4P09017 ERCC6L-201ENST00000334463 4243 ntAPPRIS P2 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXC4P09017 PLCH1-202ENST00000340059 6168 ntAPPRIS ALT2 TSL 1 (best) BASIC5.17□□□□□ -1.58
HOXC4P09017 TET1-201ENST00000373644 9288 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXC4P09017 SGIP1-203ENST00000371037 7768 ntAPPRIS P3 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXC4P09017 FGF1-214ENST00000612258 3805 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXC4P09017 ADGRL3-217ENST00000514591 6297 ntAPPRIS P2 TSL 5 BASIC5.16□□□□□ -1.58
HOXC4P09017 MTHFD2L-207ENST00000433372 1407 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HOXC4P09017 FANCI-201ENST00000300027 4713 ntAPPRIS P3 TSL 5 BASIC5.16□□□□□ -1.58
HOXC4P09017 AC003985.2-201ENST00000562268 1669 ntBASIC5.16□□□□□ -1.58
HOXC4P09017 NUP37-201ENST00000251074 1203 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXC4P09017 TMBIM4-201ENST00000286424 989 ntTSL 5 BASIC5.16□□□□□ -1.58
HOXC4P09017 AL078599.1-201ENST00000402075 293 ntBASIC5.16□□□□□ -1.58
HOXC4P09017 EI24P4-201ENST00000423683 1078 ntBASIC5.16□□□□□ -1.58
HOXC4P09017 LINC01740-201ENST00000423842 332 ntTSL 2 BASIC5.16□□□□□ -1.58
HOXC4P09017 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC5.16□□□□□ -1.58
HOXC4P09017 FSIP2-AS1-201ENST00000429929 440 ntTSL 3 BASIC5.16□□□□□ -1.58
HOXC4P09017 RPS27P18-201ENST00000431701 247 ntBASIC5.16□□□□□ -1.58
HOXC4P09017 CLUHP1-201ENST00000435012 1190 ntBASIC5.16□□□□□ -1.58
HOXC4P09017 FSIP2-AS1-202ENST00000436557 689 ntTSL 3 BASIC5.16□□□□□ -1.58
HOXC4P09017 AC090114.3-201ENST00000479267 829 ntBASIC5.16□□□□□ -1.58
HOXC4P09017 IGBP1P4-201ENST00000503202 879 ntBASIC5.16□□□□□ -1.58
HOXC4P09017 EIF3KP3-201ENST00000514461 639 ntBASIC5.16□□□□□ -1.58
HOXC4P09017 RNU6ATAC24P-201ENST00000516811 135 ntBASIC5.16□□□□□ -1.58
HOXC4P09017 IGHVII-44-2-201ENST00000517728 250 ntBASIC5.16□□□□□ -1.58
HOXC4P09017 AC013701.1-201ENST00000522657 465 ntBASIC5.16□□□□□ -1.58
HOXC4P09017 AP002373.2-201ENST00000541631 1060 ntBASIC5.16□□□□□ -1.58
HOXC4P09017 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC5.16□□□□□ -1.58
HOXC4P09017 CLMN-206ENST00000556441 452 ntTSL 5 BASIC5.16□□□□□ -1.58
HOXC4P09017 NOP10-202ENST00000557912 436 ntTSL 2 BASIC5.16□□□□□ -1.58
HOXC4P09017 MIR4646-201ENST00000580775 63 ntBASIC5.16□□□□□ -1.58
HOXC4P09017 UBL5-207ENST00000590068 390 ntAPPRIS P1 TSL 5 BASIC5.16□□□□□ -1.58
HOXC4P09017 AC108738.1-201ENST00000603703 237 ntBASIC5.16□□□□□ -1.58
HOXC4P09017 AJ239318.1-201ENST00000624445 607 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HOXC4P09017 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.16□□□□□ -1.58
HOXC4P09017 POT1-AS1-205ENST00000453342 3252 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
HOXC4P09017 NKAIN2-204ENST00000545433 3052 ntTSL 5 BASIC5.16□□□□□ -1.58
HOXC4P09017 AC104964.3-201ENST00000606115 2860 ntBASIC5.16□□□□□ -1.58
HOXC4P09017 AL360270.2-201ENST00000562952 5985 ntBASIC5.16□□□□□ -1.58
HOXC4P09017 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.16□□□□□ -1.58
HOXC4P09017 AL132656.2-201ENST00000482985 1837 ntTSL 5 BASIC5.16□□□□□ -1.58
HOXC4P09017 EPB41L2-226ENST00000530757 4360 ntTSL 2 BASIC5.16□□□□□ -1.58
HOXC4P09017 KSR2-201ENST00000339824 17726 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
HOXC4P09017 DST-220ENST00000518935 3547 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
HOXC4P09017 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
HOXC4P09017 MMAA-205ENST00000541599 1437 ntTSL 5 BASIC5.15□□□□□ -1.58
HOXC4P09017 PIGN-241ENST00000640050 3154 ntAPPRIS P1 TSL 5 BASIC5.15□□□□□ -1.58
HOXC4P09017 CYP3A7-CYP3A51P-202ENST00000620220 1704 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
HOXC4P09017 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.58
HOXC4P09017 AC006210.2-201ENST00000367074 1545 ntBASIC5.15□□□□□ -1.58
HOXC4P09017 OR9G4-201ENST00000302957 984 ntBASIC5.15□□□□□ -1.59
HOXC4P09017 CHMP1B2P-201ENST00000399581 597 ntBASIC5.15□□□□□ -1.59
HOXC4P09017 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
HOXC4P09017 LINC01589-201ENST00000422971 548 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
HOXC4P09017 AC006455.6-201ENST00000426192 893 ntBASIC5.15□□□□□ -1.59
HOXC4P09017 RPL7AP49-201ENST00000429522 581 ntBASIC5.15□□□□□ -1.59
HOXC4P09017 BX276092.6-201ENST00000430476 250 ntBASIC5.15□□□□□ -1.59
HOXC4P09017 LINC00894-203ENST00000432696 298 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
HOXC4P09017 AL591438.1-201ENST00000433508 581 ntBASIC5.15□□□□□ -1.59
HOXC4P09017 AL450992.2-201ENST00000434182 506 ntTSL 5 BASIC5.15□□□□□ -1.59
HOXC4P09017 AC073062.1-201ENST00000434509 455 ntTSL 5 BASIC5.15□□□□□ -1.59
HOXC4P09017 AL161722.1-201ENST00000446972 1032 ntBASIC5.15□□□□□ -1.59
HOXC4P09017 AC092647.2-201ENST00000452998 253 ntBASIC5.15□□□□□ -1.59
HOXC4P09017 SBDSP1-204ENST00000453858 737 ntBASIC5.15□□□□□ -1.59
HOXC4P09017 BX276092.8-201ENST00000455722 250 ntBASIC5.15□□□□□ -1.59
HOXC4P09017 AC090589.1-201ENST00000473109 362 ntBASIC5.15□□□□□ -1.59
HOXC4P09017 RPS12P31-201ENST00000491419 398 ntBASIC5.15□□□□□ -1.59
HOXC4P09017 RN7SL808P-201ENST00000496066 299 ntBASIC5.15□□□□□ -1.59
HOXC4P09017 AC005674.1-201ENST00000503493 459 ntTSL 3 BASIC5.15□□□□□ -1.59
HOXC4P09017 NDUFA5P12-201ENST00000503796 343 ntBASIC5.15□□□□□ -1.59
HOXC4P09017 AC138832.1-201ENST00000522871 556 ntBASIC5.15□□□□□ -1.59
HOXC4P09017 AP000676.2-201ENST00000529711 301 ntBASIC5.15□□□□□ -1.59
HOXC4P09017 AC016993.1-201ENST00000547033 1258 ntTSL 3 BASIC5.15□□□□□ -1.59
HOXC4P09017 HAGLR-211ENST00000549329 609 ntTSL 4 BASIC5.15□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 93.1 ms