Protein–RNA interactions for Protein: P02462

COL4A1, Collagen alpha-1(IV) chain, humanhuman

Predictions only

Length 1,669 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1P02462 TMED11P-203ENST00000502630 533 ntTSL 5 BASIC6.09□□□□□ -1.43
COL4A1P02462 AC008147.3-201ENST00000548666 354 ntBASIC6.09□□□□□ -1.43
COL4A1P02462 AL110118.1-201ENST00000553543 400 ntBASIC6.09□□□□□ -1.43
COL4A1P02462 AC099518.4-204ENST00000567047 380 ntTSL 2 BASIC6.09□□□□□ -1.43
COL4A1P02462 MIR7853-201ENST00000584820 132 ntBASIC6.09□□□□□ -1.43
COL4A1P02462 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC6.09□□□□□ -1.43
COL4A1P02462 RDM1-215ENST00000612980 501 ntTSL 1 (best) BASIC6.09□□□□□ -1.43
COL4A1P02462 USP9X-201ENST00000324545 12401 ntTSL 5 BASIC6.09□□□□□ -1.43
COL4A1P02462 TMEM68-202ENST00000434581 2549 ntAPPRIS P1 TSL 5 BASIC6.09□□□□□ -1.43
COL4A1P02462 AC008691.1-207ENST00000636819 4154 ntTSL 5 BASIC6.09□□□□□ -1.43
COL4A1P02462 AKAP6-212ENST00000557272 4601 ntTSL 5 BASIC6.09□□□□□ -1.43
COL4A1P02462 PCDH15-230ENST00000617051 7048 ntTSL 5 BASIC6.09□□□□□ -1.44
COL4A1P02462 ATF7IP-222ENST00000544627 4847 ntAPPRIS ALT2 TSL 1 (best) BASIC6.09□□□□□ -1.44
COL4A1P02462 PHLDB2-201ENST00000393923 5673 ntTSL 2 BASIC6.09□□□□□ -1.44
COL4A1P02462 MSL3P1-202ENST00000440028 1468 ntBASIC6.09□□□□□ -1.44
COL4A1P02462 TPD52-203ENST00000448733 4339 ntTSL 1 (best) BASIC6.09□□□□□ -1.44
COL4A1P02462 GRIK2-205ENST00000369138 4921 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL4A1P02462 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL4A1P02462 SNORA70F-201ENST00000384142 135 ntBASIC6.08□□□□□ -1.44
COL4A1P02462 NPM1-203ENST00000393820 1598 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL4A1P02462 AC023347.1-202ENST00000419223 440 ntTSL 5 BASIC6.08□□□□□ -1.44
COL4A1P02462 CNOT7P1-201ENST00000429006 852 ntBASIC6.08□□□□□ -1.44
COL4A1P02462 AL450023.3-201ENST00000440592 271 ntBASIC6.08□□□□□ -1.44
COL4A1P02462 AL606490.8-201ENST00000441624 319 ntBASIC6.08□□□□□ -1.44
COL4A1P02462 AC012512.1-201ENST00000446594 718 ntBASIC6.08□□□□□ -1.44
COL4A1P02462 AC006967.1-201ENST00000467608 589 ntBASIC6.08□□□□□ -1.44
COL4A1P02462 AC116562.1-201ENST00000485355 781 ntBASIC6.08□□□□□ -1.44
COL4A1P02462 OR2A3P-201ENST00000493774 953 ntBASIC6.08□□□□□ -1.44
COL4A1P02462 ECM1P2-201ENST00000503354 1577 ntBASIC6.08□□□□□ -1.44
COL4A1P02462 AC111000.4-201ENST00000504301 569 ntTSL 5 BASIC6.08□□□□□ -1.44
COL4A1P02462 SOX5P1-201ENST00000524155 1127 ntBASIC6.08□□□□□ -1.44
COL4A1P02462 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC6.08□□□□□ -1.44
COL4A1P02462 AC015660.3-201ENST00000559569 198 ntTSL 3 BASIC6.08□□□□□ -1.44
COL4A1P02462 AP005059.1-201ENST00000578391 456 ntTSL 2 BASIC6.08□□□□□ -1.44
COL4A1P02462 LINC01791-201ENST00000589511 677 ntTSL 5 BASIC6.08□□□□□ -1.44
COL4A1P02462 AL024498.1-201ENST00000606522 1100 ntTSL 3 BASIC6.08□□□□□ -1.44
COL4A1P02462 OR52H1-202ENST00000641796 1061 ntBASIC6.08□□□□□ -1.44
COL4A1P02462 CTSS-201ENST00000368985 4107 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL4A1P02462 ABI1-210ENST00000376170 3362 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL4A1P02462 F9-201ENST00000218099 2780 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL4A1P02462 ZNF148-201ENST00000360647 9651 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL4A1P02462 PPFIA2-201ENST00000333447 5517 ntTSL 5 BASIC6.08□□□□□ -1.44
COL4A1P02462 STAP1-201ENST00000265404 1511 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL4A1P02462 MPP5-204ENST00000555925 5006 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL4A1P02462 SCAPER-207ENST00000563290 5028 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
COL4A1P02462 RCOR3-201ENST00000367005 4246 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL4A1P02462 TENM4-201ENST00000278550 14000 ntAPPRIS P1 TSL 5 BASIC6.08□□□□□ -1.44
COL4A1P02462 HIVEP2-202ENST00000367603 9724 ntAPPRIS P1 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL4A1P02462 USP7-202ENST00000381886 3587 ntTSL 1 (best) BASIC6.08□□□□□ -1.44
COL4A1P02462 RBPJ-202ENST00000342320 5761 ntAPPRIS P3 TSL 1 (best) BASIC6.08□□□□□ -1.44
COL4A1P02462 SLC16A9-201ENST00000395347 3646 ntAPPRIS P1 TSL 2 BASIC6.07□□□□□ -1.44
COL4A1P02462 MIR99AHG-219ENST00000619222 3476 ntTSL 2 BASIC6.07□□□□□ -1.44
COL4A1P02462 C1orf54-201ENST00000369098 418 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL4A1P02462 AC104462.2-201ENST00000418402 271 ntTSL 3 BASIC6.07□□□□□ -1.44
COL4A1P02462 RPL12P43-201ENST00000420608 499 ntBASIC6.07□□□□□ -1.44
COL4A1P02462 PSAT1P4-201ENST00000466500 526 ntBASIC6.07□□□□□ -1.44
COL4A1P02462 AC111000.3-201ENST00000508057 576 ntBASIC6.07□□□□□ -1.44
COL4A1P02462 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC6.07□□□□□ -1.44
COL4A1P02462 IGKV1-32-201ENST00000519290 311 ntBASIC6.07□□□□□ -1.44
COL4A1P02462 PCED1B-AS1-210ENST00000552975 378 ntTSL 2 BASIC6.07□□□□□ -1.44
COL4A1P02462 AL049875.1-201ENST00000554328 582 ntTSL 4 BASIC6.07□□□□□ -1.44
COL4A1P02462 AC010618.3-202ENST00000598141 476 ntTSL 3 BASIC6.07□□□□□ -1.44
COL4A1P02462 AC020910.2-201ENST00000603635 610 ntBASIC6.07□□□□□ -1.44
COL4A1P02462 AC068831.8-201ENST00000620171 435 ntBASIC6.07□□□□□ -1.44
COL4A1P02462 RAB3B-201ENST00000371655 12844 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL4A1P02462 RSF1-201ENST00000308488 11550 ntAPPRIS P2 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL4A1P02462 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC6.07□□□□□ -1.44
COL4A1P02462 VSNL1-203ENST00000406397 2725 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
COL4A1P02462 RXFP1-206ENST00000460056 2735 ntTSL 2 BASIC6.07□□□□□ -1.44
COL4A1P02462 AL022344.1-201ENST00000439913 3965 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL4A1P02462 ITGAV-204ENST00000433736 3288 ntAPPRIS ALT2 TSL 2 BASIC6.07□□□□□ -1.44
COL4A1P02462 SSR1-201ENST00000244763 9669 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL4A1P02462 ACSL5-204ENST00000393081 3380 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
COL4A1P02462 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC6.07□□□□□ -1.44
COL4A1P02462 STAU2-210ENST00000521210 1950 ntTSL 2 BASIC6.07□□□□□ -1.44
COL4A1P02462 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL4A1P02462 SMAD5-212ENST00000545620 6937 ntAPPRIS P1 TSL 5 BASIC6.07□□□□□ -1.44
COL4A1P02462 DHX40P1-201ENST00000588725 1412 ntBASIC6.07□□□□□ -1.44
COL4A1P02462 CCDC162P-202ENST00000368966 6751 ntBASIC6.07□□□□□ -1.44
COL4A1P02462 MED1-201ENST00000300651 5844 ntAPPRIS P1 TSL 1 (best) BASIC6.07□□□□□ -1.44
COL4A1P02462 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC6.07□□□□□ -1.44
COL4A1P02462 SEC31A-209ENST00000500777 3610 ntTSL 5 BASIC6.07□□□□□ -1.44
COL4A1P02462 AC092681.1-201ENST00000297369 291 ntBASIC6.07□□□□□ -1.44
COL4A1P02462 AL136116.2-201ENST00000404020 785 ntBASIC6.07□□□□□ -1.44
COL4A1P02462 RN7SKP17-201ENST00000411242 351 ntBASIC6.07□□□□□ -1.44
COL4A1P02462 RPS27AP7-201ENST00000422792 455 ntBASIC6.07□□□□□ -1.44
COL4A1P02462 RPL18P10-201ENST00000425606 538 ntBASIC6.07□□□□□ -1.44
COL4A1P02462 TEX41-206ENST00000432608 661 ntTSL 3 BASIC6.07□□□□□ -1.44
COL4A1P02462 NRBF2P3-201ENST00000432731 865 ntBASIC6.07□□□□□ -1.44
COL4A1P02462 AL139327.2-202ENST00000437057 400 ntTSL 3 BASIC6.07□□□□□ -1.44
COL4A1P02462 AL161618.1-201ENST00000438738 761 ntTSL 5 BASIC6.07□□□□□ -1.44
COL4A1P02462 AL365271.1-201ENST00000448909 603 ntTSL 3 BASIC6.07□□□□□ -1.44
COL4A1P02462 AC109439.2-201ENST00000502421 564 ntTSL 4 BASIC6.07□□□□□ -1.44
COL4A1P02462 AC009117.3-202ENST00000563825 557 ntTSL 4 BASIC6.07□□□□□ -1.44
COL4A1P02462 MYLK-221ENST00000583087 678 ntTSL 4 BASIC6.07□□□□□ -1.44
COL4A1P02462 CERS6-AS1-204ENST00000599361 536 ntTSL 4 BASIC6.07□□□□□ -1.44
COL4A1P02462 AL121873.1-201ENST00000616013 524 ntBASIC6.07□□□□□ -1.44
COL4A1P02462 GPHN-204ENST00000543237 2459 ntTSL 2 BASIC6.07□□□□□ -1.44
COL4A1P02462 LRMDA-208ENST00000496424 3923 ntTSL 2 BASIC6.07□□□□□ -1.44
COL4A1P02462 KLHL4-201ENST00000373114 2445 ntTSL 1 (best) BASIC6.06□□□□□ -1.44
Retrieved 100 of 98,524 protein–RNA pairs in 75.8 ms