Protein–RNA interactions for Protein: P55318

FOXA3, Hepatocyte nuclear factor 3-gamma, humanhuman

Predicted RBP Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA3P55318 AP001476.3-201ENST00000429512 415 ntTSL 3 BASIC3.88□□□□□ -1.79
FOXA3P55318 ZDHHC20P1-204ENST00000435787 423 ntBASIC3.88□□□□□ -1.79
FOXA3P55318 PNKDP1-201ENST00000435914 430 ntBASIC3.88□□□□□ -1.79
FOXA3P55318 AL139161.2-201ENST00000438371 740 ntTSL 3 BASIC3.88□□□□□ -1.79
FOXA3P55318 LINC00867-203ENST00000445161 580 ntTSL 2 BASIC3.88□□□□□ -1.79
FOXA3P55318 AC004890.1-201ENST00000461005 181 ntBASIC3.88□□□□□ -1.79
FOXA3P55318 AC023194.2-201ENST00000465398 406 ntBASIC3.88□□□□□ -1.79
FOXA3P55318 RN7SL189P-201ENST00000468631 289 ntBASIC3.88□□□□□ -1.79
FOXA3P55318 RPL9P15-201ENST00000491096 532 ntBASIC3.88□□□□□ -1.79
FOXA3P55318 ARL4AP1-201ENST00000503220 705 ntBASIC3.88□□□□□ -1.79
FOXA3P55318 HMGB1P44-201ENST00000508597 572 ntBASIC3.88□□□□□ -1.79
FOXA3P55318 AC010181.1-202ENST00000509191 798 ntTSL 3 BASIC3.88□□□□□ -1.79
FOXA3P55318 AC008592.4-201ENST00000509999 450 ntTSL 3 BASIC3.88□□□□□ -1.79
FOXA3P55318 NR1I3-229ENST00000511748 480 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
FOXA3P55318 AC006427.1-201ENST00000514359 712 ntBASIC3.88□□□□□ -1.79
FOXA3P55318 RNA5SP464-201ENST00000516251 108 ntBASIC3.88□□□□□ -1.79
FOXA3P55318 AC116917.1-201ENST00000520558 305 ntBASIC3.88□□□□□ -1.79
FOXA3P55318 AC084125.1-201ENST00000525461 429 ntTSL 3 BASIC3.88□□□□□ -1.79
FOXA3P55318 HMGB1P42-201ENST00000532126 553 ntBASIC3.88□□□□□ -1.79
FOXA3P55318 AC016257.1-201ENST00000550088 641 ntTSL 2 BASIC3.88□□□□□ -1.79
FOXA3P55318 RN7SL230P-201ENST00000580835 303 ntBASIC3.88□□□□□ -1.79
FOXA3P55318 AC124856.1-201ENST00000600819 896 ntBASIC3.88□□□□□ -1.79
FOXA3P55318 AC005252.1-201ENST00000604518 1063 ntBASIC3.88□□□□□ -1.79
FOXA3P55318 AC239809.3-202ENST00000628902 686 ntTSL 5 BASIC3.88□□□□□ -1.79
FOXA3P55318 GHR-209ENST00000612626 4524 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
FOXA3P55318 SRRM1P3-201ENST00000426911 2678 ntBASIC3.88□□□□□ -1.79
FOXA3P55318 AL606537.1-201ENST00000607258 2011 ntBASIC3.88□□□□□ -1.79
FOXA3P55318 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
FOXA3P55318 ADGRL2-203ENST00000370713 5382 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
FOXA3P55318 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC3.88□□□□□ -1.79
FOXA3P55318 NAMPTP1-201ENST00000440465 2514 ntBASIC3.88□□□□□ -1.79
FOXA3P55318 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC3.88□□□□□ -1.79
FOXA3P55318 AC090826.1-202ENST00000562009 3337 ntTSL 1 (best) BASIC3.88□□□□□ -1.79
FOXA3P55318 SPART-201ENST00000355182 4820 ntAPPRIS P1 TSL 5 BASIC3.88□□□□□ -1.79
FOXA3P55318 UTS2B-201ENST00000340524 2395 ntAPPRIS P1 TSL 2 BASIC3.88□□□□□ -1.79
FOXA3P55318 CLCA1-202ENST00000394711 3118 ntAPPRIS P1 TSL 1 (best) BASIC3.88□□□□□ -1.79
FOXA3P55318 IRAK1BP1-204ENST00000607739 1387 ntTSL 2 BASIC3.88□□□□□ -1.79
FOXA3P55318 CLCA3P-201ENST00000284054 2407 ntTSL 5 BASIC3.87□□□□□ -1.79
FOXA3P55318 FAM216B-201ENST00000313851 3243 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
FOXA3P55318 ADGB-205ENST00000397944 5325 ntAPPRIS P5 TSL 5 BASIC3.87□□□□□ -1.79
FOXA3P55318 RPS6KA5-207ENST00000614987 26795 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
FOXA3P55318 CEP112-204ENST00000537949 2847 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
FOXA3P55318 OR56A1-202ENST00000641423 6096 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
FOXA3P55318 LANCL1-204ENST00000441020 4503 ntAPPRIS P1 TSL 5 BASIC3.87□□□□□ -1.79
FOXA3P55318 GRIK2-204ENST00000369137 4272 ntTSL 5 BASIC3.87□□□□□ -1.79
FOXA3P55318 AP001273.1-201ENST00000624493 3152 ntBASIC3.87□□□□□ -1.79
FOXA3P55318 ZZZ3-202ENST00000370801 4328 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
FOXA3P55318 RNA5SP273-201ENST00000362484 113 ntBASIC3.87□□□□□ -1.79
FOXA3P55318 RN7SKP28-201ENST00000364770 305 ntBASIC3.87□□□□□ -1.79
FOXA3P55318 MRRF-207ENST00000373729 870 ntTSL 3 BASIC3.87□□□□□ -1.79
FOXA3P55318 DEFB126-201ENST00000382398 655 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
FOXA3P55318 AL590867.1-201ENST00000392385 1212 ntTSL 2 BASIC3.87□□□□□ -1.79
FOXA3P55318 PCDH15-212ENST00000395442 2970 ntTSL 5 BASIC3.87□□□□□ -1.79
FOXA3P55318 AP000580.1-201ENST00000404439 358 ntBASIC3.87□□□□□ -1.79
FOXA3P55318 AL390316.1-201ENST00000406279 553 ntBASIC3.87□□□□□ -1.79
FOXA3P55318 RPS26P4-201ENST00000431743 355 ntBASIC3.87□□□□□ -1.79
FOXA3P55318 CLUHP1-201ENST00000435012 1190 ntBASIC3.87□□□□□ -1.79
FOXA3P55318 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC3.87□□□□□ -1.79
FOXA3P55318 AL138921.1-201ENST00000444359 846 ntTSL 5 BASIC3.87□□□□□ -1.79
FOXA3P55318 TTTY22-201ENST00000445253 427 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
FOXA3P55318 MRPL48P1-201ENST00000445390 636 ntBASIC3.87□□□□□ -1.79
FOXA3P55318 AC007099.1-201ENST00000451622 1185 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
FOXA3P55318 BX546450.1-201ENST00000454307 482 ntTSL 2 BASIC3.87□□□□□ -1.79
FOXA3P55318 AL356981.1-201ENST00000454879 684 ntBASIC3.87□□□□□ -1.79
FOXA3P55318 AC004692.2-203ENST00000458590 497 ntTSL 4 BASIC3.87□□□□□ -1.79
FOXA3P55318 RPS23P6-201ENST00000466136 431 ntBASIC3.87□□□□□ -1.79
FOXA3P55318 AC058823.1-201ENST00000485315 474 ntBASIC3.87□□□□□ -1.79
FOXA3P55318 RN7SL423P-201ENST00000486202 304 ntBASIC3.87□□□□□ -1.79
FOXA3P55318 AC005412.2-201ENST00000492004 341 ntBASIC3.87□□□□□ -1.79
FOXA3P55318 AC018639.1-201ENST00000492994 442 ntBASIC3.87□□□□□ -1.79
FOXA3P55318 DUBR-205ENST00000495228 411 ntTSL 2 BASIC3.87□□□□□ -1.79
FOXA3P55318 LINC02217-201ENST00000505844 687 ntTSL 2 BASIC3.87□□□□□ -1.79
FOXA3P55318 RNA5SP438-201ENST00000516561 112 ntBASIC3.87□□□□□ -1.79
FOXA3P55318 AC013714.1-201ENST00000524707 747 ntTSL 3 BASIC3.87□□□□□ -1.79
FOXA3P55318 AP001000.1-201ENST00000526843 742 ntBASIC3.87□□□□□ -1.79
FOXA3P55318 NAV2-IT1-201ENST00000528204 506 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
FOXA3P55318 AP004607.2-201ENST00000533949 322 ntBASIC3.87□□□□□ -1.79
FOXA3P55318 TRDV3-201ENST00000535880 425 ntAPPRIS P1 BASIC3.87□□□□□ -1.79
FOXA3P55318 A2MP1-201ENST00000543404 1201 ntTSL 5 BASIC3.87□□□□□ -1.79
FOXA3P55318 AC090502.3-201ENST00000552046 529 ntTSL 3 BASIC3.87□□□□□ -1.79
FOXA3P55318 AC008056.2-201ENST00000553812 551 ntTSL 5 BASIC3.87□□□□□ -1.79
FOXA3P55318 AL031600.2-201ENST00000563223 307 ntTSL 5 BASIC3.87□□□□□ -1.79
FOXA3P55318 AC005341.1-201ENST00000571086 708 ntBASIC3.87□□□□□ -1.79
FOXA3P55318 SEPT4-AS1-202ENST00000580589 653 ntTSL 3 BASIC3.87□□□□□ -1.79
FOXA3P55318 AC114488.3-201ENST00000581333 480 ntTSL 4 BASIC3.87□□□□□ -1.79
FOXA3P55318 APOC2-205ENST00000592257 444 ntTSL 3 BASIC3.87□□□□□ -1.79
FOXA3P55318 USP32P2-207ENST00000608376 253 ntTSL 5 BASIC3.87□□□□□ -1.79
FOXA3P55318 uc_338.29-201ENST00000615099 168 ntBASIC3.87□□□□□ -1.79
FOXA3P55318 CCL4-202ENST00000615863 904 ntAPPRIS P1 TSL 1 (best) BASIC3.87□□□□□ -1.79
FOXA3P55318 RN7SL544P-201ENST00000617232 284 ntBASIC3.87□□□□□ -1.79
FOXA3P55318 Metazoa_SRP.81-201ENST00000618466 316 ntBASIC3.87□□□□□ -1.79
FOXA3P55318 RN7SL763P-201ENST00000620922 284 ntBASIC3.87□□□□□ -1.79
FOXA3P55318 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC3.87□□□□□ -1.79
FOXA3P55318 DARS-AS1-230ENST00000631306 530 ntTSL 5 BASIC3.87□□□□□ -1.79
FOXA3P55318 SCRN1-210ENST00000631335 423 ntTSL 5 BASIC3.87□□□□□ -1.79
FOXA3P55318 TDRD3-204ENST00000377894 2484 ntTSL 2 BASIC3.87□□□□□ -1.79
FOXA3P55318 RASA1-205ENST00000512763 3060 ntAPPRIS ALT2 TSL 2 BASIC3.87□□□□□ -1.79
FOXA3P55318 HSPA8P18-201ENST00000439846 1928 ntBASIC3.87□□□□□ -1.79
FOXA3P55318 PHTF2-208ENST00000450574 2516 ntTSL 1 (best) BASIC3.87□□□□□ -1.79
FOXA3P55318 FAM133A-202ENST00000332647 3159 ntAPPRIS P1 TSL 2 BASIC3.87□□□□□ -1.79
Retrieved 100 of 98,524 protein–RNA pairs in 114.2 ms