Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 ANK2-202ENST00000357077 14196 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA1P49639 AC104623.2-202ENST00000623477 4002 ntBASIC4.78□□□□□ -1.64
HOXA1P49639 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA1P49639 EMSY-206ENST00000525038 4376 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA1P49639 FYB1-201ENST00000351578 4750 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA1P49639 AKAP4-201ENST00000358526 2881 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA1P49639 CCR2-201ENST00000292301 2671 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXA1P49639 ANKRD30A-201ENST00000361713 4405 ntAPPRIS P2 TSL 5 BASIC4.78□□□□□ -1.64
HOXA1P49639 TMEM161BP1-201ENST00000457388 1457 ntBASIC4.78□□□□□ -1.64
HOXA1P49639 APOOL-201ENST00000373173 1279 ntAPPRIS P2 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA1P49639 STMN1-202ENST00000374291 867 ntAPPRIS P1 TSL 2 BASIC4.78□□□□□ -1.64
HOXA1P49639 ZCCHC6-202ENST00000375947 611 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXA1P49639 TRAV8-4-201ENST00000390438 469 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
HOXA1P49639 MIR1271-201ENST00000408537 86 ntBASIC4.78□□□□□ -1.64
HOXA1P49639 AL096829.1-201ENST00000413677 457 ntBASIC4.78□□□□□ -1.64
HOXA1P49639 AL159990.1-201ENST00000415119 337 ntTSL 3 BASIC4.78□□□□□ -1.64
HOXA1P49639 AC000058.1-201ENST00000415249 536 ntTSL 4 BASIC4.78□□□□□ -1.64
HOXA1P49639 AL158050.1-201ENST00000416077 457 ntBASIC4.78□□□□□ -1.64
HOXA1P49639 AL161909.2-201ENST00000417577 409 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXA1P49639 RNASE9-203ENST00000429244 1084 ntAPPRIS P3 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA1P49639 LCE6A-201ENST00000431011 628 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA1P49639 AC016582.1-203ENST00000433142 502 ntTSL 3 BASIC4.78□□□□□ -1.64
HOXA1P49639 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC4.78□□□□□ -1.64
HOXA1P49639 AL159990.2-201ENST00000436491 337 ntTSL 3 BASIC4.78□□□□□ -1.64
HOXA1P49639 RPEP4-201ENST00000437636 602 ntBASIC4.78□□□□□ -1.64
HOXA1P49639 LINC01350-202ENST00000439633 623 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXA1P49639 RPS23P9-201ENST00000448848 438 ntBASIC4.78□□□□□ -1.64
HOXA1P49639 AC009518.1-201ENST00000452219 559 ntTSL 4 BASIC4.78□□□□□ -1.64
HOXA1P49639 RSU1P1-201ENST00000453416 441 ntBASIC4.78□□□□□ -1.64
HOXA1P49639 AL603882.1-201ENST00000463059 681 ntBASIC4.78□□□□□ -1.64
HOXA1P49639 LINC02339-201ENST00000472649 752 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA1P49639 MBNL1-217ENST00000485509 1023 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA1P49639 MBNL1-219ENST00000492948 1054 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA1P49639 OR7E157P-201ENST00000494376 911 ntBASIC4.78□□□□□ -1.64
HOXA1P49639 AC010168.1-201ENST00000501178 657 ntTSL 3 BASIC4.78□□□□□ -1.64
HOXA1P49639 AC122714.1-201ENST00000502510 459 ntBASIC4.78□□□□□ -1.64
HOXA1P49639 PRELID3BP6-201ENST00000503839 571 ntBASIC4.78□□□□□ -1.64
HOXA1P49639 OR7E99P-201ENST00000505750 922 ntBASIC4.78□□□□□ -1.64
HOXA1P49639 AC021151.1-201ENST00000506933 183 ntTSL 3 BASIC4.78□□□□□ -1.64
HOXA1P49639 AC131094.1-201ENST00000506984 490 ntTSL 2 BASIC4.78□□□□□ -1.64
HOXA1P49639 BTG4P1-201ENST00000510421 183 ntBASIC4.78□□□□□ -1.64
HOXA1P49639 SNX18P25-201ENST00000510539 758 ntBASIC4.78□□□□□ -1.64
HOXA1P49639 MEF2C-AS1-211ENST00000514092 501 ntTSL 3 BASIC4.78□□□□□ -1.64
HOXA1P49639 TMEM68-213ENST00000522576 826 ntTSL 2 BASIC4.78□□□□□ -1.64
HOXA1P49639 AL137224.1-201ENST00000527984 389 ntTSL 2 BASIC4.78□□□□□ -1.64
HOXA1P49639 KBTBD3-204ENST00000531482 874 ntTSL 3 BASIC4.78□□□□□ -1.64
HOXA1P49639 AC005906.2-204ENST00000541095 481 ntTSL 3 BASIC4.78□□□□□ -1.64
HOXA1P49639 IFNG-AS1-203ENST00000541715 902 ntTSL 3 BASIC4.78□□□□□ -1.64
HOXA1P49639 AL049838.1-201ENST00000563647 981 ntBASIC4.78□□□□□ -1.64
HOXA1P49639 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC4.78□□□□□ -1.64
HOXA1P49639 HAUS1-203ENST00000585518 506 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXA1P49639 MIR212-201ENST00000586026 110 ntBASIC4.78□□□□□ -1.64
HOXA1P49639 AC006116.9-203ENST00000591036 566 ntTSL 4 BASIC4.78□□□□□ -1.64
HOXA1P49639 AC233280.2-201ENST00000603917 1070 ntBASIC4.78□□□□□ -1.64
HOXA1P49639 AC022001.1-201ENST00000605193 268 ntBASIC4.78□□□□□ -1.64
HOXA1P49639 AC026786.2-201ENST00000606110 392 ntTSL 3 BASIC4.78□□□□□ -1.64
HOXA1P49639 AP005229.2-201ENST00000609980 697 ntBASIC4.78□□□□□ -1.64
HOXA1P49639 AC084824.4-201ENST00000620106 731 ntBASIC4.78□□□□□ -1.64
HOXA1P49639 AL122023.1-201ENST00000622847 530 ntBASIC4.78□□□□□ -1.64
HOXA1P49639 AC099654.15-201ENST00000639802 509 ntBASIC4.78□□□□□ -1.64
HOXA1P49639 ERC2-201ENST00000288221 6138 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA1P49639 PTPRD-206ENST00000397617 8248 ntTSL 5 BASIC4.78□□□□□ -1.64
HOXA1P49639 ACE2-201ENST00000252519 3393 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA1P49639 ZNF195-201ENST00000005082 2021 ntAPPRIS ALT2 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA1P49639 EHBP1-202ENST00000405015 4108 ntAPPRIS ALT2 TSL 2 BASIC4.78□□□□□ -1.64
HOXA1P49639 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA1P49639 AL359715.4-201ENST00000606629 1436 ntBASIC4.78□□□□□ -1.64
HOXA1P49639 AC130304.1-201ENST00000622942 2385 ntBASIC4.78□□□□□ -1.64
HOXA1P49639 AC027228.2-201ENST00000567141 2154 ntBASIC4.78□□□□□ -1.64
HOXA1P49639 ATRX-201ENST00000373344 11220 ntAPPRIS P4 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA1P49639 OR2AT4-205ENST00000641931 8357 ntAPPRIS P1 BASIC4.78□□□□□ -1.64
HOXA1P49639 SLCO1B7-201ENST00000421593 1923 ntAPPRIS P1 TSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA1P49639 MUC15-204ENST00000527569 1386 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
HOXA1P49639 TET2-202ENST00000305737 9233 ntTSL 1 (best) BASIC4.78□□□□□ -1.65
HOXA1P49639 EPHA4-202ENST00000409854 3454 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HOXA1P49639 NLRP11-201ENST00000589093 3417 ntAPPRIS P2 TSL 1 (best) BASIC4.77□□□□□ -1.65
HOXA1P49639 PLCB1-210ENST00000612075 6576 ntTSL 5 BASIC4.77□□□□□ -1.65
HOXA1P49639 DTNA-202ENST00000283365 6522 ntTSL 5 BASIC4.77□□□□□ -1.65
HOXA1P49639 ZNF271P-205ENST00000639248 4573 ntTSL 5 BASIC4.77□□□□□ -1.65
HOXA1P49639 SMAP1-206ENST00000619054 3150 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HOXA1P49639 AC010132.2-201ENST00000295493 1043 ntBASIC4.77□□□□□ -1.65
HOXA1P49639 RNA5SP77-201ENST00000365394 120 ntBASIC4.77□□□□□ -1.65
HOXA1P49639 RNA5SP211-201ENST00000365516 117 ntBASIC4.77□□□□□ -1.65
HOXA1P49639 TRAJ46-201ENST00000390491 63 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
HOXA1P49639 PPARG-204ENST00000397000 1122 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HOXA1P49639 SNRPEP6-201ENST00000407465 277 ntBASIC4.77□□□□□ -1.65
HOXA1P49639 RPL35AP31-201ENST00000418340 337 ntBASIC4.77□□□□□ -1.65
HOXA1P49639 AL034347.1-201ENST00000420766 835 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXA1P49639 AL139240.1-201ENST00000422963 505 ntTSL 2 BASIC4.77□□□□□ -1.65
HOXA1P49639 LINC01690-201ENST00000424837 576 ntTSL 2 BASIC4.77□□□□□ -1.65
HOXA1P49639 MTCO2P23-201ENST00000425216 680 ntBASIC4.77□□□□□ -1.65
HOXA1P49639 AC009784.1-201ENST00000426484 460 ntBASIC4.77□□□□□ -1.65
HOXA1P49639 AL357832.1-201ENST00000427460 420 ntTSL 3 BASIC4.77□□□□□ -1.65
HOXA1P49639 USP12PY-201ENST00000427677 1064 ntBASIC4.77□□□□□ -1.65
HOXA1P49639 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC4.77□□□□□ -1.65
HOXA1P49639 FO393414.1-201ENST00000428697 1184 ntBASIC4.77□□□□□ -1.65
HOXA1P49639 AC114973.1-201ENST00000429057 632 ntBASIC4.77□□□□□ -1.65
HOXA1P49639 PMCHL1-204ENST00000430902 659 ntTSL 1 (best) BASIC4.77□□□□□ -1.65
HOXA1P49639 UBE2L5P-201ENST00000436446 465 ntAPPRIS P1 BASIC4.77□□□□□ -1.65
HOXA1P49639 AC004854.1-201ENST00000440356 349 ntBASIC4.77□□□□□ -1.65
Retrieved 100 of 98,524 protein–RNA pairs in 73.4 ms