Protein–RNA interactions for Protein: P31269

HOXA9, Homeobox protein Hox-A9, humanhuman

Predictions only

Length 272 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA9P31269 CD47-201ENST00000355354 5020 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA9P31269 OR51G2-202ENST00000641926 3326 ntAPPRIS P1 BASIC5.55□□□□□ -1.52
HOXA9P31269 CCAR1-217ENST00000543719 3521 ntTSL 5 BASIC5.55□□□□□ -1.52
HOXA9P31269 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA9P31269 HNF4G-203ENST00000396423 4209 ntAPPRIS P3 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA9P31269 TRIP12-204ENST00000389045 5355 ntAPPRIS ALT2 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA9P31269 CBX5-201ENST00000209875 11528 ntAPPRIS P1 TSL 1 (best) BASIC5.55□□□□□ -1.52
HOXA9P31269 ACSL5-202ENST00000354655 3351 ntAPPRIS P1 TSL 2 BASIC5.55□□□□□ -1.52
HOXA9P31269 EMSY-201ENST00000334736 5508 ntAPPRIS P3 TSL 5 BASIC5.55□□□□□ -1.52
HOXA9P31269 AC114774.1-201ENST00000507410 1770 ntBASIC5.55□□□□□ -1.52
HOXA9P31269 SLFN12L-205ENST00000628453 1767 ntAPPRIS ALT2 TSL 5 BASIC5.55□□□□□ -1.52
HOXA9P31269 DCLRE1A-201ENST00000361384 4468 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA9P31269 SMC2-202ENST00000374787 4266 ntAPPRIS P1 TSL 2 BASIC5.54□□□□□ -1.52
HOXA9P31269 BRCA1-203ENST00000357654 7094 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA9P31269 AC011933.2-201ENST00000578539 2790 ntBASIC5.54□□□□□ -1.52
HOXA9P31269 LRRC49-223ENST00000560369 2586 ntAPPRIS ALT1 TSL 2 BASIC5.54□□□□□ -1.52
HOXA9P31269 RNASE9-201ENST00000338904 1049 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA9P31269 MAX-203ENST00000341653 330 ntTSL 2 BASIC5.54□□□□□ -1.52
HOXA9P31269 SNORA51.8-201ENST00000384234 132 ntBASIC5.54□□□□□ -1.52
HOXA9P31269 MIR600-201ENST00000385007 98 ntBASIC5.54□□□□□ -1.52
HOXA9P31269 MIR1182-201ENST00000408363 97 ntBASIC5.54□□□□□ -1.52
HOXA9P31269 AL445213.1-201ENST00000412589 747 ntBASIC5.54□□□□□ -1.52
HOXA9P31269 AC090505.2-201ENST00000427064 464 ntTSL 3 BASIC5.54□□□□□ -1.52
HOXA9P31269 AC068481.1-202ENST00000428379 555 ntTSL 4 BASIC5.54□□□□□ -1.52
HOXA9P31269 KNOP1P3-201ENST00000446933 426 ntBASIC5.54□□□□□ -1.52
HOXA9P31269 LINC00601-201ENST00000456514 1168 ntTSL 3 BASIC5.54□□□□□ -1.52
HOXA9P31269 AC083982.1-201ENST00000485679 344 ntBASIC5.54□□□□□ -1.52
HOXA9P31269 AC093909.2-201ENST00000505178 437 ntTSL 3 BASIC5.54□□□□□ -1.52
HOXA9P31269 AC091912.1-201ENST00000511351 248 ntBASIC5.54□□□□□ -1.52
HOXA9P31269 AC097486.1-201ENST00000515331 210 ntBASIC5.54□□□□□ -1.52
HOXA9P31269 MSC-AS1-205ENST00000519068 569 ntTSL 3 BASIC5.54□□□□□ -1.52
HOXA9P31269 RNASE9-204ENST00000553541 1136 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA9P31269 RNASE9-206ENST00000554964 1101 ntAPPRIS P3 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA9P31269 RNASE9-208ENST00000556208 1212 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA9P31269 RNASE9-210ENST00000557209 1137 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA9P31269 ETFRF1-211ENST00000557540 1259 ntAPPRIS ALT1 TSL 2 BASIC5.54□□□□□ -1.52
HOXA9P31269 AC087501.4-201ENST00000574460 235 ntTSL 5 BASIC5.54□□□□□ -1.52
HOXA9P31269 EIF3FP1-201ENST00000613970 806 ntBASIC5.54□□□□□ -1.52
HOXA9P31269 PSMC6-201ENST00000445930 2188 ntAPPRIS P2 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA9P31269 LRIT3-201ENST00000327908 3781 ntTSL 2 BASIC5.54□□□□□ -1.52
HOXA9P31269 MTM1-203ENST00000370396 3593 ntAPPRIS P1 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA9P31269 ARHGAP20-204ENST00000528829 5880 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA9P31269 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC5.54□□□□□ -1.52
HOXA9P31269 WDPCP-202ENST00000398544 2063 ntAPPRIS ALT2 TSL 1 (best) BASIC5.54□□□□□ -1.52
HOXA9P31269 NR1H5P-201ENST00000452683 1377 ntBASIC5.54□□□□□ -1.52
HOXA9P31269 C5orf51-204ENST00000612065 1391 ntTSL 5 BASIC5.54□□□□□ -1.52
HOXA9P31269 AP005212.5-201ENST00000577614 3505 ntTSL 5 BASIC5.53□□□□□ -1.52
HOXA9P31269 AC239868.2-201ENST00000564237 4527 ntBASIC5.53□□□□□ -1.52
HOXA9P31269 NCOA7-202ENST00000368357 5521 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXA9P31269 CCR5-201ENST00000292303 3450 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXA9P31269 CHST9-203ENST00000618847 11388 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXA9P31269 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXA9P31269 GPR18-202ENST00000397470 1468 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXA9P31269 SOX2-OT-218ENST00000498731 3576 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
HOXA9P31269 RNA5SP123-201ENST00000363244 119 ntBASIC5.53□□□□□ -1.52
HOXA9P31269 DEFB113-201ENST00000398718 249 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXA9P31269 CXCL8-202ENST00000401931 700 ntAPPRIS ALT1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXA9P31269 AC017048.1-201ENST00000412153 495 ntTSL 2 BASIC5.53□□□□□ -1.52
HOXA9P31269 TRBV29-1-201ENST00000422143 402 ntAPPRIS P1 BASIC5.53□□□□□ -1.52
HOXA9P31269 HNRNPA1P29-201ENST00000426409 879 ntBASIC5.53□□□□□ -1.52
HOXA9P31269 FTLP19-201ENST00000433300 394 ntBASIC5.53□□□□□ -1.52
HOXA9P31269 AC099670.2-201ENST00000435130 321 ntBASIC5.53□□□□□ -1.52
HOXA9P31269 RPL31P44-201ENST00000447680 377 ntBASIC5.53□□□□□ -1.52
HOXA9P31269 TRY2P-201ENST00000448860 689 ntBASIC5.53□□□□□ -1.52
HOXA9P31269 NDUFA5P8-201ENST00000449019 346 ntBASIC5.53□□□□□ -1.52
HOXA9P31269 AC092324.1-201ENST00000468671 324 ntBASIC5.53□□□□□ -1.52
HOXA9P31269 AC090589.1-201ENST00000473109 362 ntBASIC5.53□□□□□ -1.52
HOXA9P31269 RPL37AP8-201ENST00000494116 276 ntBASIC5.53□□□□□ -1.52
HOXA9P31269 AC119150.1-201ENST00000507143 563 ntTSL 2 BASIC5.53□□□□□ -1.52
HOXA9P31269 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC5.53□□□□□ -1.52
HOXA9P31269 RNA5SP228-201ENST00000516232 133 ntBASIC5.53□□□□□ -1.52
HOXA9P31269 RN7SKP260-201ENST00000516907 149 ntBASIC5.53□□□□□ -1.52
HOXA9P31269 AC002563.1-201ENST00000535109 451 ntTSL 3 BASIC5.53□□□□□ -1.52
HOXA9P31269 AC090617.5-201ENST00000571815 528 ntTSL 3 BASIC5.53□□□□□ -1.52
HOXA9P31269 AC008738.1-201ENST00000590117 375 ntTSL 5 BASIC5.53□□□□□ -1.52
HOXA9P31269 AC011487.3-201ENST00000593607 453 ntBASIC5.53□□□□□ -1.52
HOXA9P31269 AC091953.3-201ENST00000623220 236 ntBASIC5.53□□□□□ -1.52
HOXA9P31269 AP003400.3-201ENST00000624904 346 ntBASIC5.53□□□□□ -1.52
HOXA9P31269 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXA9P31269 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC5.53□□□□□ -1.52
HOXA9P31269 NELL2-205ENST00000452445 3196 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXA9P31269 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.53□□□□□ -1.52
HOXA9P31269 SV2B-201ENST00000330276 11202 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXA9P31269 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXA9P31269 OPRM1-217ENST00000522236 2459 ntTSL 1 (best) BASIC5.53□□□□□ -1.52
HOXA9P31269 ADAM24P-201ENST00000398655 2101 ntBASIC5.53□□□□□ -1.52
HOXA9P31269 N4BP2L2-204ENST00000399396 2872 ntTSL 5 BASIC5.53□□□□□ -1.52
HOXA9P31269 MMRN1-201ENST00000264790 4967 ntAPPRIS P1 TSL 1 (best) BASIC5.53□□□□□ -1.52
HOXA9P31269 NHSL2-204ENST00000631375 12593 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXA9P31269 GHR-211ENST00000618088 4491 ntAPPRIS P1 TSL 5 BASIC5.52□□□□□ -1.53
HOXA9P31269 WDR63-201ENST00000294664 2995 ntAPPRIS P3 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXA9P31269 ALB-220ENST00000621628 1606 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXA9P31269 CFH-201ENST00000359637 1454 ntTSL 1 (best) BASIC5.52□□□□□ -1.53
HOXA9P31269 TEX26-201ENST00000380473 1478 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXA9P31269 LIPF-203ENST00000394375 1470 ntTSL 2 BASIC5.52□□□□□ -1.53
HOXA9P31269 OBSCN-201ENST00000284548 20432 ntTSL 2 BASIC5.52□□□□□ -1.53
HOXA9P31269 GAPT-202ENST00000396776 3016 ntAPPRIS P1 TSL 2 BASIC5.52□□□□□ -1.53
HOXA9P31269 ETV1-207ENST00000405358 4181 ntTSL 5 BASIC5.52□□□□□ -1.53
HOXA9P31269 TDO2-208ENST00000536354 1701 ntAPPRIS P1 TSL 1 (best) BASIC5.52□□□□□ -1.53
HOXA9P31269 DGKH-210ENST00000628433 3449 ntTSL 2 BASIC5.52□□□□□ -1.53
Retrieved 100 of 98,524 protein–RNA pairs in 129.9 ms