Protein–RNA interactions for Protein: P25940

COL5A3, Collagen alpha-3(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,745 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A3P25940 RNU2-30P-201ENST00000516209 141 ntBASIC6.34□□□□□ -1.39
COL5A3P25940 OR8Q1P-201ENST00000526467 655 ntBASIC6.34□□□□□ -1.39
COL5A3P25940 AC009396.1-201ENST00000553628 1079 ntTSL 2 BASIC6.34□□□□□ -1.39
COL5A3P25940 RPS15A-203ENST00000563390 525 ntAPPRIS P1 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL5A3P25940 DTNA-232ENST00000599844 853 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
COL5A3P25940 LINC00850-201ENST00000629221 685 ntTSL 1 (best) BASIC6.34□□□□□ -1.39
COL5A3P25940 RNF123-214ENST00000629802 207 ntTSL 5 BASIC6.34□□□□□ -1.39
COL5A3P25940 SPINK5-202ENST00000359874 3656 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL5A3P25940 ZNF780A-203ENST00000450241 7500 ntTSL 2 BASIC6.34□□□□□ -1.39
COL5A3P25940 MYBPC1-207ENST00000545503 3569 ntAPPRIS ALT2 TSL 1 (best) BASIC6.34□□□□□ -1.39
COL5A3P25940 RAB3GAP1-207ENST00000539493 3161 ntTSL 5 BASIC6.34□□□□□ -1.39
COL5A3P25940 LINC01478-201ENST00000587877 2068 ntTSL 1 (best) BASIC6.34□□□□□ -1.4
COL5A3P25940 CTNND1-233ENST00000532787 5751 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
COL5A3P25940 AL021331.1-201ENST00000402817 582 ntBASIC6.33□□□□□ -1.4
COL5A3P25940 LINC02020-202ENST00000421006 575 ntTSL 4 BASIC6.33□□□□□ -1.4
COL5A3P25940 CCNB1IP1P2-201ENST00000432876 818 ntBASIC6.33□□□□□ -1.4
COL5A3P25940 NDUFB4P8-201ENST00000435351 367 ntBASIC6.33□□□□□ -1.4
COL5A3P25940 AP000943.1-201ENST00000438416 712 ntTSL 3 BASIC6.33□□□□□ -1.4
COL5A3P25940 BX842559.2-201ENST00000451418 605 ntBASIC6.33□□□□□ -1.4
COL5A3P25940 FGB-207ENST00000509493 1164 ntTSL 5 BASIC6.33□□□□□ -1.4
COL5A3P25940 AC096759.1-201ENST00000510744 473 ntTSL 3 BASIC6.33□□□□□ -1.4
COL5A3P25940 AC134698.5-201ENST00000519444 336 ntBASIC6.33□□□□□ -1.4
COL5A3P25940 AC069234.2-201ENST00000541383 575 ntTSL 3 BASIC6.33□□□□□ -1.4
COL5A3P25940 MIR4284-201ENST00000578924 81 ntBASIC6.33□□□□□ -1.4
COL5A3P25940 AC097467.3-209ENST00000595760 615 ntTSL 5 BASIC6.33□□□□□ -1.4
COL5A3P25940 AC079414.3-201ENST00000612986 1090 ntBASIC6.33□□□□□ -1.4
COL5A3P25940 DEC1-204ENST00000614246 210 ntAPPRIS ALT2 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL5A3P25940 LINC00706-201ENST00000628989 699 ntTSL 3 BASIC6.33□□□□□ -1.4
COL5A3P25940 MTERF1-201ENST00000351870 1997 ntAPPRIS P3 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL5A3P25940 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL5A3P25940 ECM1P2-201ENST00000503354 1577 ntBASIC6.33□□□□□ -1.4
COL5A3P25940 PLCXD3-202ENST00000377801 7704 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL5A3P25940 PSMA4-201ENST00000044462 4411 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL5A3P25940 SLC15A2-201ENST00000295605 2379 ntTSL 2 BASIC6.33□□□□□ -1.4
COL5A3P25940 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC6.33□□□□□ -1.4
COL5A3P25940 Y_RNA.126-201ENST00000363382 111 ntBASIC6.33□□□□□ -1.4
COL5A3P25940 AL136116.2-201ENST00000404020 785 ntBASIC6.33□□□□□ -1.4
COL5A3P25940 CACYBP-203ENST00000406752 243 ntTSL 5 BASIC6.33□□□□□ -1.4
COL5A3P25940 IL6-206ENST00000407492 926 ntTSL 3 BASIC6.33□□□□□ -1.4
COL5A3P25940 AL354726.1-201ENST00000411981 402 ntTSL 2 BASIC6.33□□□□□ -1.4
COL5A3P25940 DOCK9-AS1-201ENST00000439367 392 ntTSL 3 BASIC6.33□□□□□ -1.4
COL5A3P25940 OR1H1P-201ENST00000448731 937 ntBASIC6.33□□□□□ -1.4
COL5A3P25940 AL359715.2-201ENST00000452402 682 ntTSL 2 BASIC6.33□□□□□ -1.4
COL5A3P25940 AP001596.1-202ENST00000452460 644 ntTSL 3 BASIC6.33□□□□□ -1.4
COL5A3P25940 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
COL5A3P25940 SSR3-206ENST00000476217 807 ntTSL 3 BASIC6.33□□□□□ -1.4
COL5A3P25940 OR2A3P-201ENST00000493774 953 ntBASIC6.33□□□□□ -1.4
COL5A3P25940 AC107396.1-201ENST00000509641 735 ntTSL 5 BASIC6.33□□□□□ -1.4
COL5A3P25940 LINC01489-201ENST00000542689 605 ntTSL 5 BASIC6.33□□□□□ -1.4
COL5A3P25940 AL133166.1-205ENST00000548306 569 ntTSL 4 BASIC6.33□□□□□ -1.4
COL5A3P25940 MIR4675-201ENST00000577898 77 ntBASIC6.33□□□□□ -1.4
COL5A3P25940 AC103792.1-201ENST00000603591 919 ntBASIC6.33□□□□□ -1.4
COL5A3P25940 CCL14-203ENST00000620991 426 ntTSL 1 (best) BASIC6.33□□□□□ -1.4
COL5A3P25940 LCA5L-201ENST00000288350 2416 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
COL5A3P25940 CLASP2-213ENST00000480013 5972 ntTSL 5 BASIC6.33□□□□□ -1.4
COL5A3P25940 FAM196B-201ENST00000377365 2999 ntAPPRIS P1 TSL 2 BASIC6.33□□□□□ -1.4
COL5A3P25940 SORCS1-210ENST00000622431 6701 ntTSL 5 BASIC6.33□□□□□ -1.4
COL5A3P25940 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC6.33□□□□□ -1.4
COL5A3P25940 ZFX-202ENST00000338565 2906 ntTSL 5 BASIC6.32□□□□□ -1.4
COL5A3P25940 ZNF521-203ENST00000538137 4253 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
COL5A3P25940 LINC02097-201ENST00000419257 2063 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A3P25940 FAM111B-206ENST00000620384 3405 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
COL5A3P25940 LINC00314-201ENST00000324988 607 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A3P25940 ATP5HP3-201ENST00000396994 486 ntBASIC6.32□□□□□ -1.4
COL5A3P25940 RPL23AP1-201ENST00000428990 471 ntBASIC6.32□□□□□ -1.4
COL5A3P25940 SLC36A1-202ENST00000429484 977 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A3P25940 AL031668.1-201ENST00000451556 603 ntTSL 3 BASIC6.32□□□□□ -1.4
COL5A3P25940 AC121764.3-201ENST00000465946 384 ntTSL 2 BASIC6.32□□□□□ -1.4
COL5A3P25940 AC104036.1-201ENST00000523550 611 ntTSL 3 BASIC6.32□□□□□ -1.4
COL5A3P25940 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC6.32□□□□□ -1.4
COL5A3P25940 AC009643.1-201ENST00000532030 391 ntBASIC6.32□□□□□ -1.4
COL5A3P25940 AC009562.1-202ENST00000558755 565 ntTSL 4 BASIC6.32□□□□□ -1.4
COL5A3P25940 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC6.32□□□□□ -1.4
COL5A3P25940 AC112493.1-201ENST00000609836 303 ntTSL 3 BASIC6.32□□□□□ -1.4
COL5A3P25940 LHX9-201ENST00000367387 7836 ntAPPRIS P3 TSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A3P25940 PTK2-213ENST00000519465 3279 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A3P25940 NCLP2-201ENST00000416078 1462 ntBASIC6.32□□□□□ -1.4
COL5A3P25940 CAPRIN2-202ENST00000395805 4156 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A3P25940 AC099654.2-201ENST00000433031 1980 ntBASIC6.32□□□□□ -1.4
COL5A3P25940 EMX2OS-206ENST00000551288 7280 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A3P25940 FAM47E-202ENST00000502320 6249 ntAPPRIS ALT2 TSL 2 BASIC6.32□□□□□ -1.4
COL5A3P25940 TRPC4-203ENST00000358477 2955 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A3P25940 AC234781.1-202ENST00000412436 1329 ntTSL 5 BASIC6.32□□□□□ -1.4
COL5A3P25940 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A3P25940 PKIA-201ENST00000352966 1736 ntAPPRIS P1 TSL 2 BASIC6.32□□□□□ -1.4
COL5A3P25940 CPS1-203ENST00000430249 5698 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A3P25940 RRN3-202ENST00000327307 2039 ntTSL 2 BASIC6.32□□□□□ -1.4
COL5A3P25940 PDGFRA-206ENST00000508170 2202 ntTSL 1 (best) BASIC6.32□□□□□ -1.4
COL5A3P25940 OR8J2-201ENST00000641465 2883 ntAPPRIS P1 BASIC6.31□□□□□ -1.4
COL5A3P25940 LINC00989-201ENST00000508174 2080 ntTSL 3 BASIC6.31□□□□□ -1.4
COL5A3P25940 RNF217-201ENST00000359704 1784 ntTSL 1 (best) BASIC6.31□□□□□ -1.4
COL5A3P25940 RNF217-202ENST00000368414 1771 ntTSL 2 BASIC6.31□□□□□ -1.4
COL5A3P25940 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC6.31□□□□□ -1.4
COL5A3P25940 RPL12P43-201ENST00000420608 499 ntBASIC6.31□□□□□ -1.4
COL5A3P25940 AC017019.1-201ENST00000426129 261 ntBASIC6.31□□□□□ -1.4
COL5A3P25940 AC004975.1-201ENST00000428733 208 ntBASIC6.31□□□□□ -1.4
COL5A3P25940 AC099670.2-201ENST00000435130 321 ntBASIC6.31□□□□□ -1.4
COL5A3P25940 AC080013.1-206ENST00000496842 712 ntTSL 2 BASIC6.31□□□□□ -1.4
COL5A3P25940 AC027130.1-201ENST00000564490 686 ntTSL 2 BASIC6.31□□□□□ -1.4
COL5A3P25940 MIR3160-1-201ENST00000577972 85 ntBASIC6.31□□□□□ -1.4
Retrieved 100 of 98,524 protein–RNA pairs in 66.2 ms