Protein–RNA interactions for Protein: P09016

HOXD4, Homeobox protein Hox-D4, humanhuman

Predicted RBP Predictions only

Length 255 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD4P09016 CNOT7P2-201ENST00000441051 832 ntBASIC5.03□□□□□ -1.6
HOXD4P09016 AC099654.1-201ENST00000442649 407 ntTSL 3 BASIC5.03□□□□□ -1.6
HOXD4P09016 AP001604.1-201ENST00000447384 954 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HOXD4P09016 MACROD2-IT1-201ENST00000448536 665 ntTSL 5 BASIC5.03□□□□□ -1.6
HOXD4P09016 AC004129.2-201ENST00000457229 287 ntBASIC5.03□□□□□ -1.6
HOXD4P09016 SEPT7P9-201ENST00000475691 413 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HOXD4P09016 OR11I1P-201ENST00000486033 954 ntBASIC5.03□□□□□ -1.6
HOXD4P09016 AC016746.1-201ENST00000489557 831 ntTSL 2 BASIC5.03□□□□□ -1.6
HOXD4P09016 AC106895.1-202ENST00000502956 777 ntTSL 3 BASIC5.03□□□□□ -1.6
HOXD4P09016 ENSA-211ENST00000503345 793 ntTSL 3 BASIC5.03□□□□□ -1.6
HOXD4P09016 NDUFA5P12-201ENST00000503796 343 ntBASIC5.03□□□□□ -1.6
HOXD4P09016 HIGD1AP14-201ENST00000507617 282 ntBASIC5.03□□□□□ -1.6
HOXD4P09016 MGAT4D-203ENST00000511113 1125 ntAPPRIS P2 TSL 5 BASIC5.03□□□□□ -1.6
HOXD4P09016 TOMM22P4-201ENST00000511318 336 ntBASIC5.03□□□□□ -1.6
HOXD4P09016 AC004052.1-201ENST00000514327 567 ntTSL 4 BASIC5.03□□□□□ -1.6
HOXD4P09016 LINC02382-201ENST00000515840 614 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HOXD4P09016 AC078899.1-201ENST00000521432 1185 ntBASIC5.03□□□□□ -1.6
HOXD4P09016 AC015522.1-201ENST00000523678 640 ntTSL 3 BASIC5.03□□□□□ -1.6
HOXD4P09016 SETP1-201ENST00000556014 845 ntBASIC5.03□□□□□ -1.6
HOXD4P09016 TAT-AS1-201ENST00000561529 873 ntTSL 5 BASIC5.03□□□□□ -1.6
HOXD4P09016 PWRN4-201ENST00000563016 420 ntTSL 5 BASIC5.03□□□□□ -1.6
HOXD4P09016 MIR4472-2-201ENST00000582069 67 ntBASIC5.03□□□□□ -1.6
HOXD4P09016 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.03□□□□□ -1.6
HOXD4P09016 SAMD9L-209ENST00000610760 1221 ntTSL 1 (best) BASIC5.03□□□□□ -1.6
HOXD4P09016 AL592430.2-201ENST00000633779 486 ntTSL 5 BASIC5.03□□□□□ -1.6
HOXD4P09016 STAG2-202ENST00000371144 4281 ntAPPRIS P3 TSL 1 (best) BASIC5.03□□□□□ -1.6
HOXD4P09016 AC007750.1-202ENST00000418968 4098 ntTSL 5 BASIC5.03□□□□□ -1.6
HOXD4P09016 NDRG3-201ENST00000349004 2964 ntAPPRIS P4 TSL 1 (best) BASIC5.03□□□□□ -1.6
HOXD4P09016 MTRNR2L11-201ENST00000604646 1552 ntAPPRIS P1 BASIC5.03□□□□□ -1.6
HOXD4P09016 EFCAB5-201ENST00000394835 5132 ntAPPRIS P2 TSL 1 (best) BASIC5.03□□□□□ -1.6
HOXD4P09016 C9orf57-201ENST00000377024 1502 ntAPPRIS P2 TSL 1 (best) BASIC5.02□□□□□ -1.61
HOXD4P09016 KCNJ10-205ENST00000638728 4351 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
HOXD4P09016 SRGAP1-201ENST00000355086 23331 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
HOXD4P09016 RFX3-204ENST00000382004 9307 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
HOXD4P09016 ZEB1-202ENST00000361642 5990 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
HOXD4P09016 IQCM-205ENST00000636414 1844 ntAPPRIS ALT2 TSL 5 BASIC5.02□□□□□ -1.61
HOXD4P09016 LGALS8-222ENST00000527974 1349 ntAPPRIS P4 TSL 5 BASIC5.02□□□□□ -1.61
HOXD4P09016 ARPP19-208ENST00000566423 5362 ntAPPRIS P1 TSL 1 (best) BASIC5.02□□□□□ -1.61
HOXD4P09016 MFSD8-219ENST00000641228 2559 ntBASIC5.02□□□□□ -1.61
HOXD4P09016 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.02□□□□□ -1.61
HOXD4P09016 TAS2R8-201ENST00000240615 1243 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
HOXD4P09016 OR5M8-201ENST00000327216 1047 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
HOXD4P09016 NUDT6-202ENST00000339154 1065 ntTSL 1 (best) BASIC5.02□□□□□ -1.61
HOXD4P09016 MIR130A-201ENST00000385274 89 ntBASIC5.02□□□□□ -1.61
HOXD4P09016 TRAV9-1-201ENST00000390431 338 ntAPPRIS P1 BASIC5.02□□□□□ -1.61
HOXD4P09016 RN7SKP97-201ENST00000410966 333 ntBASIC5.02□□□□□ -1.61
HOXD4P09016 AC095032.2-201ENST00000414923 418 ntTSL 2 BASIC5.02□□□□□ -1.61
HOXD4P09016 HYALP1-201ENST00000417674 1279 ntBASIC5.02□□□□□ -1.61
HOXD4P09016 AL592078.1-201ENST00000421866 321 ntTSL 3 BASIC5.02□□□□□ -1.61
HOXD4P09016 TSSK4-203ENST00000428351 576 ntTSL 2 BASIC5.02□□□□□ -1.61
HOXD4P09016 LINC02529-201ENST00000429657 772 ntTSL 3 BASIC5.02□□□□□ -1.61
HOXD4P09016 AC006335.2-201ENST00000437993 330 ntBASIC5.02□□□□□ -1.61
HOXD4P09016 EEF1B2P5-201ENST00000444820 548 ntBASIC5.02□□□□□ -1.61
HOXD4P09016 AL137005.1-201ENST00000452944 719 ntTSL 5 BASIC5.02□□□□□ -1.61
HOXD4P09016 AL022329.1-203ENST00000453811 451 ntTSL 3 BASIC5.02□□□□□ -1.61
HOXD4P09016 AP000547.1-201ENST00000454360 617 ntBASIC5.02□□□□□ -1.61
HOXD4P09016 RANP1-206ENST00000455094 651 ntBASIC5.02□□□□□ -1.61
HOXD4P09016 AC005532.2-201ENST00000467154 373 ntBASIC5.02□□□□□ -1.61
HOXD4P09016 RN7SL826P-201ENST00000479724 288 ntBASIC5.02□□□□□ -1.61
HOXD4P09016 RPL5P22-201ENST00000480199 884 ntBASIC5.02□□□□□ -1.61
HOXD4P09016 LINC02040-201ENST00000481004 556 ntTSL 5 BASIC5.02□□□□□ -1.61
HOXD4P09016 AC093001.1-201ENST00000489011 551 ntTSL 4 BASIC5.02□□□□□ -1.61
HOXD4P09016 AC004889.1-208ENST00000489077 423 ntTSL 3 BASIC5.02□□□□□ -1.61
HOXD4P09016 RN7SL447P-201ENST00000494711 245 ntBASIC5.02□□□□□ -1.61
HOXD4P09016 LINC02271-202ENST00000506379 596 ntTSL 4 BASIC5.02□□□□□ -1.61
HOXD4P09016 AC138409.2-202ENST00000507274 458 ntBASIC5.02□□□□□ -1.61
HOXD4P09016 AC063979.2-201ENST00000513767 958 ntTSL 5 BASIC5.02□□□□□ -1.61
HOXD4P09016 RN7SKP99-201ENST00000517028 307 ntBASIC5.02□□□□□ -1.61
HOXD4P09016 AC040914.1-201ENST00000518674 318 ntTSL 3 BASIC5.02□□□□□ -1.61
HOXD4P09016 AC111149.1-201ENST00000522560 343 ntTSL 3 BASIC5.02□□□□□ -1.61
HOXD4P09016 AC012616.1-201ENST00000600294 197 ntBASIC5.02□□□□□ -1.61
HOXD4P09016 DARS-AS1-220ENST00000607985 660 ntTSL 5 BASIC5.02□□□□□ -1.61
HOXD4P09016 AC005162.3-202ENST00000609495 483 ntTSL 5 BASIC5.02□□□□□ -1.61
HOXD4P09016 PTPRO-203ENST00000442921 3030 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
HOXD4P09016 UNC80-203ENST00000439458 13562 ntAPPRIS P1 TSL 5 BASIC5.02□□□□□ -1.61
HOXD4P09016 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
HOXD4P09016 RIF1-203ENST00000428287 7722 ntAPPRIS ALT2 TSL 1 (best) BASIC5.02□□□□□ -1.61
HOXD4P09016 NAT1-203ENST00000517492 2280 ntAPPRIS P1 TSL 2 BASIC5.02□□□□□ -1.61
HOXD4P09016 CX3CR1-201ENST00000358309 3151 ntTSL 2 BASIC5.02□□□□□ -1.61
HOXD4P09016 PCAT14-202ENST00000627127 3935 ntBASIC5.02□□□□□ -1.61
HOXD4P09016 MYBPC1-216ENST00000550270 3426 ntAPPRIS ALT2 TSL 5 BASIC5.01□□□□□ -1.61
HOXD4P09016 NAMPTP1-201ENST00000440465 2514 ntBASIC5.01□□□□□ -1.61
HOXD4P09016 ALG2-202ENST00000319033 1627 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HOXD4P09016 ZNF571-201ENST00000328550 4113 ntAPPRIS P1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HOXD4P09016 DDX58-201ENST00000379868 4089 ntTSL 5 BASIC5.01□□□□□ -1.61
HOXD4P09016 TRPM3-209ENST00000377110 12258 ntAPPRIS ALT1 TSL 1 (best) BASIC5.01□□□□□ -1.61
HOXD4P09016 FAS-205ENST00000357339 1044 ntAPPRIS ALT2 TSL 1 (best) BASIC5.01□□□□□ -1.61
HOXD4P09016 RNA5SP507-201ENST00000363603 121 ntBASIC5.01□□□□□ -1.61
HOXD4P09016 DEC1-201ENST00000374016 1251 ntAPPRIS P2 TSL 1 (best) BASIC5.01□□□□□ -1.61
HOXD4P09016 IL6ST-204ENST00000381293 612 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HOXD4P09016 AL133270.1-201ENST00000402635 279 ntBASIC5.01□□□□□ -1.61
HOXD4P09016 BTBD9-203ENST00000403056 1155 ntTSL 5 BASIC5.01□□□□□ -1.61
HOXD4P09016 TFPI-204ENST00000409676 1119 ntTSL 1 (best) BASIC5.01□□□□□ -1.61
HOXD4P09016 KCNJ13-202ENST00000409779 1099 ntTSL 2 BASIC5.01□□□□□ -1.61
HOXD4P09016 CASKP1-201ENST00000412870 582 ntBASIC5.01□□□□□ -1.61
HOXD4P09016 RPS6P23-201ENST00000413224 722 ntBASIC5.01□□□□□ -1.61
HOXD4P09016 GNG12-AS1-202ENST00000414904 796 ntTSL 3 BASIC5.01□□□□□ -1.61
HOXD4P09016 RPL23AP27-201ENST00000415161 451 ntBASIC5.01□□□□□ -1.61
HOXD4P09016 SPATA13-AS1-201ENST00000430733 433 ntTSL 3 BASIC5.01□□□□□ -1.61
HOXD4P09016 ATP13A4-AS1-202ENST00000431512 394 ntTSL 3 BASIC5.01□□□□□ -1.61
Retrieved 100 of 98,524 protein–RNA pairs in 91.3 ms