Protein–RNA interactions for Protein: P02461

COL3A1, Collagen alpha-1(III) chain, humanhuman

Predicted RBP Predictions only

Length 1,466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL3A1P02461 KCNJ1-204ENST00000392665 4074 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL3A1P02461 MMP13-201ENST00000260302 2716 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL3A1P02461 PLS3-201ENST00000289290 2277 ntTSL 2 BASIC6.78□□□□□ -1.32
COL3A1P02461 THSD7B-202ENST00000409968 6111 ntAPPRIS P2 TSL 5 BASIC6.78□□□□□ -1.32
COL3A1P02461 CCDC125-201ENST00000383374 2006 ntTSL 5 BASIC6.78□□□□□ -1.32
COL3A1P02461 CASC19-260ENST00000641828 2001 ntBASIC6.78□□□□□ -1.32
COL3A1P02461 TRAT1-202ENST00000426646 1596 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
COL3A1P02461 POC1B-201ENST00000313546 3001 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL3A1P02461 NLRP11-202ENST00000589824 3231 ntAPPRIS ALT2 TSL 5 BASIC6.78□□□□□ -1.32
COL3A1P02461 TNRC6A-202ENST00000395799 8438 ntAPPRIS P3 TSL 5 BASIC6.78□□□□□ -1.32
COL3A1P02461 DCLK1-208ENST00000615680 7592 ntTSL 2 BASIC6.78□□□□□ -1.32
COL3A1P02461 HEMGN-202ENST00000616898 2305 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL3A1P02461 SMG1P7-201ENST00000565246 2704 ntBASIC6.78□□□□□ -1.32
COL3A1P02461 NXPE4-202ENST00000424261 1687 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
COL3A1P02461 STATH-201ENST00000246895 598 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL3A1P02461 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC6.78□□□□□ -1.32
COL3A1P02461 IGLJ6-201ENST00000390328 70 ntAPPRIS P1 BASIC6.78□□□□□ -1.32
COL3A1P02461 ATP5HP3-201ENST00000396994 486 ntBASIC6.78□□□□□ -1.32
COL3A1P02461 LINC01359-201ENST00000415842 1157 ntTSL 2 BASIC6.78□□□□□ -1.32
COL3A1P02461 AC007161.1-201ENST00000418534 1061 ntTSL 3 BASIC6.78□□□□□ -1.32
COL3A1P02461 DPH5-204ENST00000427040 609 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
COL3A1P02461 AC009238.2-201ENST00000431026 355 ntBASIC6.78□□□□□ -1.32
COL3A1P02461 TRIM60P13-201ENST00000432350 1283 ntBASIC6.78□□□□□ -1.32
COL3A1P02461 Z82198.2-201ENST00000434741 567 ntTSL 4 BASIC6.78□□□□□ -1.32
COL3A1P02461 AL357507.1-201ENST00000435946 669 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
COL3A1P02461 AL713851.1-201ENST00000438753 918 ntTSL 5 BASIC6.78□□□□□ -1.32
COL3A1P02461 AC004824.1-201ENST00000439577 311 ntTSL 5 BASIC6.78□□□□□ -1.32
COL3A1P02461 LINC01473-203ENST00000456653 1079 ntTSL 3 BASIC6.78□□□□□ -1.32
COL3A1P02461 RN7SL441P-201ENST00000492388 296 ntBASIC6.78□□□□□ -1.32
COL3A1P02461 AC117383.1-201ENST00000507698 422 ntTSL 3 BASIC6.78□□□□□ -1.32
COL3A1P02461 AC022616.2-201ENST00000523185 300 ntBASIC6.78□□□□□ -1.32
COL3A1P02461 GCSHP4-201ENST00000538792 439 ntBASIC6.78□□□□□ -1.32
COL3A1P02461 AC090503.2-201ENST00000551135 981 ntTSL 3 BASIC6.78□□□□□ -1.32
COL3A1P02461 NOP10-202ENST00000557912 436 ntTSL 2 BASIC6.78□□□□□ -1.32
COL3A1P02461 AC066612.1-202ENST00000561094 518 ntTSL 5 BASIC6.78□□□□□ -1.32
COL3A1P02461 AC011453.2-201ENST00000603737 729 ntBASIC6.78□□□□□ -1.32
COL3A1P02461 Mico1.1-201ENST00000611698 204 ntBASIC6.78□□□□□ -1.32
COL3A1P02461 PLSCR2-207ENST00000613069 1208 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
COL3A1P02461 PRKCQ-AS1-218ENST00000624974 1132 ntTSL 5 BASIC6.78□□□□□ -1.32
COL3A1P02461 LINC01338-201ENST00000627179 632 ntTSL 3 BASIC6.78□□□□□ -1.32
COL3A1P02461 THOC2-220ENST00000618150 3211 ntTSL 1 (best) BASIC6.78□□□□□ -1.32
COL3A1P02461 CNGA1-207ENST00000514170 2837 ntAPPRIS P3 TSL 5 BASIC6.78□□□□□ -1.32
COL3A1P02461 SPTA1-201ENST00000368147 7999 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL3A1P02461 MCTP2-201ENST00000357742 7555 ntAPPRIS P1 TSL 1 (best) BASIC6.78□□□□□ -1.32
COL3A1P02461 IL31RA-204ENST00000396834 2903 ntAPPRIS ALT2 TSL 1 (best) BASIC6.77□□□□□ -1.32
COL3A1P02461 LINC02302-201ENST00000556405 2904 ntTSL 2 BASIC6.77□□□□□ -1.32
COL3A1P02461 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC6.77□□□□□ -1.33
COL3A1P02461 EXO1-201ENST00000348581 3192 ntAPPRIS P3 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL3A1P02461 VRK2-206ENST00000435505 2446 ntAPPRIS P3 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL3A1P02461 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL3A1P02461 FGF1-215ENST00000619447 3818 ntAPPRIS P1 TSL 4 BASIC6.77□□□□□ -1.33
COL3A1P02461 WAC-209ENST00000428935 1320 ntTSL 2 BASIC6.77□□□□□ -1.33
COL3A1P02461 ZNF559-201ENST00000317221 2732 ntTSL 2 BASIC6.77□□□□□ -1.33
COL3A1P02461 KMT2A-213ENST00000534358 16602 ntAPPRIS ALT2 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL3A1P02461 TANK-205ENST00000405852 2155 ntTSL 5 BASIC6.77□□□□□ -1.33
COL3A1P02461 MIPEPP2-201ENST00000422560 1819 ntBASIC6.77□□□□□ -1.33
COL3A1P02461 ARHGEF12-213ENST00000532993 8753 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
COL3A1P02461 OR7A10-201ENST00000248058 930 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
COL3A1P02461 RNA5SP223-201ENST00000365174 120 ntBASIC6.77□□□□□ -1.33
COL3A1P02461 RGS10-201ENST00000369101 738 ntTSL 1 (best) BASIC6.77□□□□□ -1.33
COL3A1P02461 TRAJ58-201ENST00000390481 63 ntAPPRIS P1 BASIC6.77□□□□□ -1.33
COL3A1P02461 AL645733.1-201ENST00000402250 217 ntBASIC6.77□□□□□ -1.33
COL3A1P02461 AL390316.1-201ENST00000406279 553 ntBASIC6.77□□□□□ -1.33
COL3A1P02461 ARSD-AS1-201ENST00000414053 816 ntTSL 2 BASIC6.77□□□□□ -1.33
COL3A1P02461 HYALP1-201ENST00000417674 1279 ntBASIC6.77□□□□□ -1.33
COL3A1P02461 AL354863.1-202ENST00000431695 494 ntTSL 5 BASIC6.77□□□□□ -1.33
COL3A1P02461 TPTE2P1-203ENST00000434100 514 ntTSL 3 BASIC6.77□□□□□ -1.33
COL3A1P02461 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC6.77□□□□□ -1.33
COL3A1P02461 RPS3AP41-201ENST00000462701 778 ntBASIC6.77□□□□□ -1.33
COL3A1P02461 AC022133.1-201ENST00000490961 571 ntBASIC6.77□□□□□ -1.33
COL3A1P02461 AC124067.3-201ENST00000522643 847 ntTSL 3 BASIC6.77□□□□□ -1.33
COL3A1P02461 LINC01578-206ENST00000555520 977 ntTSL 3 BASIC6.77□□□□□ -1.33
COL3A1P02461 AC009117.1-201ENST00000563948 554 ntBASIC6.77□□□□□ -1.33
COL3A1P02461 AC010528.1-201ENST00000568714 739 ntTSL 4 BASIC6.77□□□□□ -1.33
COL3A1P02461 AC107926.1-201ENST00000581673 621 ntTSL 3 BASIC6.77□□□□□ -1.33
COL3A1P02461 L34079.2-201ENST00000597119 561 ntTSL 3 BASIC6.77□□□□□ -1.33
COL3A1P02461 AC007620.3-201ENST00000608131 497 ntBASIC6.77□□□□□ -1.33
COL3A1P02461 FAM25E-202ENST00000608562 189 ntBASIC6.77□□□□□ -1.33
COL3A1P02461 AC020978.9-201ENST00000624380 1141 ntBASIC6.77□□□□□ -1.33
COL3A1P02461 AC097520.1-201ENST00000624435 385 ntBASIC6.77□□□□□ -1.33
COL3A1P02461 AC099654.11-201ENST00000638857 294 ntBASIC6.77□□□□□ -1.33
COL3A1P02461 HMMR-204ENST00000432118 2084 ntAPPRIS ALT2 TSL 2 BASIC6.77□□□□□ -1.33
COL3A1P02461 TRPM6-204ENST00000449912 8244 ntAPPRIS P1 TSL 1 (best) BASIC6.77□□□□□ -1.33
COL3A1P02461 NSF-206ENST00000575068 2667 ntTSL 2 BASIC6.77□□□□□ -1.33
COL3A1P02461 AC008505.1-201ENST00000637582 2025 ntTSL 5 BASIC6.77□□□□□ -1.33
COL3A1P02461 AHCTF1-201ENST00000326225 8633 ntAPPRIS P2 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL3A1P02461 BX088651.2-201ENST00000425493 3614 ntTSL 2 BASIC6.76□□□□□ -1.33
COL3A1P02461 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL3A1P02461 LINC01361-202ENST00000452834 1526 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
COL3A1P02461 PRNCR1-201ENST00000635449 12727 ntBASIC6.76□□□□□ -1.33
COL3A1P02461 CTAGE5-219ENST00000640607 4239 ntAPPRIS P5 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL3A1P02461 APOOL-202ENST00000613473 6445 ntAPPRIS ALT1 TSL 5 BASIC6.76□□□□□ -1.33
COL3A1P02461 AC079777.1-201ENST00000623836 1953 ntBASIC6.76□□□□□ -1.33
COL3A1P02461 RNF180-202ENST00000389100 4906 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL3A1P02461 GALNT5-201ENST00000259056 6171 ntAPPRIS P1 TSL 1 (best) BASIC6.76□□□□□ -1.33
COL3A1P02461 ZNF143-201ENST00000299606 2562 ntTSL 5 BASIC6.76□□□□□ -1.33
COL3A1P02461 POLR2B-213ENST00000639658 3300 ntTSL 5 BASIC6.76□□□□□ -1.33
COL3A1P02461 USP28-213ENST00000544967 3498 ntTSL 1 (best) BASIC6.76□□□□□ -1.33
COL3A1P02461 AP005432.1-201ENST00000580891 3485 ntBASIC6.76□□□□□ -1.33
COL3A1P02461 CRB1-209ENST00000535699 5140 ntTSL 5 BASIC6.76□□□□□ -1.33
Retrieved 100 of 98,524 protein–RNA pairs in 80.9 ms