Protein–RNA interactions for Protein: Q9NXB0

MKS1, Meckel syndrome type 1 protein, humanhuman

Predictions only

Length 559 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MKS1Q9NXB0 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC19.34■□□□□ 0.69
MKS1Q9NXB0 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
MKS1Q9NXB0 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC19.34■□□□□ 0.69
MKS1Q9NXB0 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC19.34■□□□□ 0.69
MKS1Q9NXB0 HSCB-202ENST00000398941 955 ntTSL 2 BASIC19.34■□□□□ 0.69
MKS1Q9NXB0 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.34■□□□□ 0.69
MKS1Q9NXB0 LTB-211ENST00000446745 853 ntTSL 1 (best) BASIC19.34■□□□□ 0.69
MKS1Q9NXB0 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC19.34■□□□□ 0.69
MKS1Q9NXB0 HTT-AS-201ENST00000503893 515 ntTSL 4 BASIC19.34■□□□□ 0.69
MKS1Q9NXB0 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC19.34■□□□□ 0.69
MKS1Q9NXB0 AC069236.1-201ENST00000604339 616 ntBASIC19.34■□□□□ 0.69
MKS1Q9NXB0 MAPT-210ENST00000535772 5718 ntTSL 5 BASIC19.34■□□□□ 0.69
MKS1Q9NXB0 ZNF213-202ENST00000416391 2996 ntAPPRIS P1 TSL 5 BASIC19.34■□□□□ 0.69
MKS1Q9NXB0 CELF6-205ENST00000567083 1496 ntAPPRIS ALT2 TSL 2 BASIC19.34■□□□□ 0.69
MKS1Q9NXB0 FGFR1-241ENST00000619564 5482 ntTSL 5 BASIC19.34■□□□□ 0.69
MKS1Q9NXB0 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.34■□□□□ 0.69
MKS1Q9NXB0 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC19.34■□□□□ 0.69
MKS1Q9NXB0 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC19.34■□□□□ 0.69
MKS1Q9NXB0 RTEL1-204ENST00000370003 2273 ntTSL 2 BASIC19.34■□□□□ 0.69
MKS1Q9NXB0 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
MKS1Q9NXB0 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
MKS1Q9NXB0 CTBP2-214ENST00000531469 1918 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.69
MKS1Q9NXB0 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC19.33■□□□□ 0.69
MKS1Q9NXB0 ALDH7A1-215ENST00000553117 1935 ntTSL 2 BASIC19.33■□□□□ 0.69
MKS1Q9NXB0 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
MKS1Q9NXB0 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
MKS1Q9NXB0 MRGPRG-AS1-201ENST00000420873 1818 ntTSL 2 BASIC19.33■□□□□ 0.69
MKS1Q9NXB0 NUDT15-201ENST00000258662 2098 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
MKS1Q9NXB0 MTMR12-203ENST00000382142 5187 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.69
MKS1Q9NXB0 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC19.33■□□□□ 0.69
MKS1Q9NXB0 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.69
MKS1Q9NXB0 FAM207A-202ENST00000397826 880 ntAPPRIS ALT1 TSL 1 (best) BASIC19.33■□□□□ 0.68
MKS1Q9NXB0 AL355472.2-201ENST00000422958 438 ntBASIC19.33■□□□□ 0.68
MKS1Q9NXB0 H2AFB3-201ENST00000615853 591 ntAPPRIS P1 BASIC19.33■□□□□ 0.68
MKS1Q9NXB0 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
MKS1Q9NXB0 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC19.33■□□□□ 0.68
MKS1Q9NXB0 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC19.33■□□□□ 0.68
MKS1Q9NXB0 ZBTB48-202ENST00000377674 2293 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
MKS1Q9NXB0 AC005082.1-201ENST00000413042 2259 ntBASIC19.33■□□□□ 0.68
MKS1Q9NXB0 UNC5D-204ENST00000420357 2966 ntTSL 5 BASIC19.33■□□□□ 0.68
MKS1Q9NXB0 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
MKS1Q9NXB0 ZNF768-202ENST00000562803 1999 ntAPPRIS ALT2 TSL 3 BASIC19.33■□□□□ 0.68
MKS1Q9NXB0 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.33■□□□□ 0.68
MKS1Q9NXB0 TMEM230-207ENST00000379286 1735 ntAPPRIS P1 TSL 2 BASIC19.33■□□□□ 0.68
MKS1Q9NXB0 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.33■□□□□ 0.68
MKS1Q9NXB0 RHOT1-202ENST00000354266 2919 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
MKS1Q9NXB0 TGFBR1-201ENST00000374990 5720 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
MKS1Q9NXB0 SLC2A11-204ENST00000398356 2388 ntTSL 1 (best) BASIC19.33■□□□□ 0.68
MKS1Q9NXB0 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC19.33■□□□□ 0.68
MKS1Q9NXB0 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MKS1Q9NXB0 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
MKS1Q9NXB0 KLHL17-201ENST00000338591 2560 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MKS1Q9NXB0 CHRNA10-201ENST00000250699 1945 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MKS1Q9NXB0 ZBED3-201ENST00000255198 6172 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
MKS1Q9NXB0 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.32■□□□□ 0.68
MKS1Q9NXB0 ZNRF2P3-201ENST00000424200 374 ntBASIC19.32■□□□□ 0.68
MKS1Q9NXB0 FEZ1-205ENST00000524435 750 ntTSL 2 BASIC19.32■□□□□ 0.68
MKS1Q9NXB0 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.32■□□□□ 0.68
MKS1Q9NXB0 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC19.32■□□□□ 0.68
MKS1Q9NXB0 AC016588.1-201ENST00000591533 542 ntTSL 4 BASIC19.32■□□□□ 0.68
MKS1Q9NXB0 HCG18-235ENST00000426882 4862 ntTSL 1 (best) BASIC19.32■□□□□ 0.68
MKS1Q9NXB0 GRM2-204ENST00000442933 2064 ntTSL 5 BASIC19.32■□□□□ 0.68
MKS1Q9NXB0 TEPSIN-201ENST00000300714 2287 ntAPPRIS P2 TSL 1 (best) BASIC19.32■□□□□ 0.68
MKS1Q9NXB0 ATP6V1D-201ENST00000216442 1845 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MKS1Q9NXB0 CBSL-210ENST00000624934 1992 ntTSL 5 BASIC19.32■□□□□ 0.68
MKS1Q9NXB0 CLEC10A-201ENST00000254868 1797 ntAPPRIS P3 TSL 1 (best) BASIC19.32■□□□□ 0.68
MKS1Q9NXB0 TFP1-202ENST00000475455 1573 ntBASIC19.32■□□□□ 0.68
MKS1Q9NXB0 DTD1-201ENST00000377452 1387 ntAPPRIS P1 TSL 1 (best) BASIC19.32■□□□□ 0.68
MKS1Q9NXB0 NUMBL-202ENST00000540131 1931 ntAPPRIS ALT2 TSL 2 BASIC19.31■□□□□ 0.68
MKS1Q9NXB0 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
MKS1Q9NXB0 WRNIP1-202ENST00000380769 3239 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
MKS1Q9NXB0 CENPH-206ENST00000515001 1305 ntTSL 2 BASIC19.31■□□□□ 0.68
MKS1Q9NXB0 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC19.31■□□□□ 0.68
MKS1Q9NXB0 ST6GALNAC4-201ENST00000335791 1691 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MKS1Q9NXB0 ZMYND11-210ENST00000403354 1664 ntTSL 5 BASIC19.31■□□□□ 0.68
MKS1Q9NXB0 ANKMY1-209ENST00000405523 1827 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
MKS1Q9NXB0 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC19.31■□□□□ 0.68
MKS1Q9NXB0 AC034268.1-201ENST00000441047 882 ntBASIC19.31■□□□□ 0.68
MKS1Q9NXB0 HES2-205ENST00000487437 968 ntTSL 3 BASIC19.31■□□□□ 0.68
MKS1Q9NXB0 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC19.31■□□□□ 0.68
MKS1Q9NXB0 AC008105.3-201ENST00000586376 844 ntTSL 3 BASIC19.31■□□□□ 0.68
MKS1Q9NXB0 MTDH-203ENST00000519934 2184 ntTSL 5 BASIC19.31■□□□□ 0.68
MKS1Q9NXB0 LARGE2-201ENST00000325468 2522 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
MKS1Q9NXB0 DEF8-211ENST00000563795 1767 ntTSL 5 BASIC19.31■□□□□ 0.68
MKS1Q9NXB0 SYT3-206ENST00000600079 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MKS1Q9NXB0 TMEM129-202ENST00000382936 2810 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MKS1Q9NXB0 SMUG1-202ENST00000337581 1571 ntAPPRIS P1 TSL 2 BASIC19.31■□□□□ 0.68
MKS1Q9NXB0 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
MKS1Q9NXB0 AC008060.1-201ENST00000401499 1551 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
MKS1Q9NXB0 GBGT1-208ENST00000540636 1934 ntTSL 2 BASIC19.31■□□□□ 0.68
MKS1Q9NXB0 SLCO4A1-201ENST00000217159 2776 ntAPPRIS P1 TSL 1 (best) BASIC19.31■□□□□ 0.68
MKS1Q9NXB0 GABBR1-202ENST00000376977 1739 ntTSL 1 (best) BASIC19.31■□□□□ 0.68
MKS1Q9NXB0 SIRT3-202ENST00000524564 1395 ntTSL 2 BASIC19.31■□□□□ 0.68
MKS1Q9NXB0 MLX-201ENST00000246912 2586 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
MKS1Q9NXB0 TFDP2-202ENST00000467072 1853 ntAPPRIS P3 TSL 1 (best) BASIC19.31■□□□□ 0.68
MKS1Q9NXB0 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MKS1Q9NXB0 MMP23B-202ENST00000378675 1309 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
MKS1Q9NXB0 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC19.3■□□□□ 0.68
MKS1Q9NXB0 MAST2-201ENST00000361297 5738 ntAPPRIS P1 TSL 1 (best) BASIC19.3■□□□□ 0.68
MKS1Q9NXB0 FBLN1-201ENST00000262722 2251 ntTSL 1 (best) BASIC19.3■□□□□ 0.68
Retrieved 100 of 98,524 protein–RNA pairs in 51.2 ms