Protein–RNA interactions for Protein: Q99715

COL12A1, Collagen alpha-1(XII) chain, humanhuman

Predictions only

Length 3,063 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL12A1Q99715 AC069368.1-202ENST00000437723 750 ntAPPRIS P1 TSL 5 BASIC17.19■□□□□ 0.34
COL12A1Q99715 KISS1R-203ENST00000606939 964 ntTSL 5 BASIC17.19■□□□□ 0.34
COL12A1Q99715 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL12A1Q99715 SNX3-201ENST00000230085 1755 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL12A1Q99715 TMEM235-203ENST00000550981 1786 ntTSL 2 BASIC17.19■□□□□ 0.34
COL12A1Q99715 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC17.19■□□□□ 0.34
COL12A1Q99715 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC17.19■□□□□ 0.34
COL12A1Q99715 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC17.19■□□□□ 0.34
COL12A1Q99715 PTPMT1-201ENST00000326656 928 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL12A1Q99715 RFX3-AS1-201ENST00000423112 552 ntTSL 3 BASIC17.19■□□□□ 0.34
COL12A1Q99715 LINC01315-202ENST00000424852 1142 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL12A1Q99715 KRT18P31-201ENST00000506277 1292 ntBASIC17.19■□□□□ 0.34
COL12A1Q99715 DRAP1-205ENST00000527119 581 ntTSL 5 BASIC17.19■□□□□ 0.34
COL12A1Q99715 AC124016.1-202ENST00000609575 619 ntTSL 2 BASIC17.19■□□□□ 0.34
COL12A1Q99715 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC17.19■□□□□ 0.34
COL12A1Q99715 IL9RP2-201ENST00000423948 1312 ntBASIC17.18■□□□□ 0.34
COL12A1Q99715 LINC01311-201ENST00000565162 1445 ntBASIC17.18■□□□□ 0.34
COL12A1Q99715 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL12A1Q99715 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC17.18■□□□□ 0.34
COL12A1Q99715 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC17.18■□□□□ 0.34
COL12A1Q99715 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL12A1Q99715 KRTCAP3-201ENST00000288873 872 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL12A1Q99715 MRPL3P1-201ENST00000400109 1033 ntBASIC17.18■□□□□ 0.34
COL12A1Q99715 AC064807.1-202ENST00000423716 936 ntTSL 2 BASIC17.18■□□□□ 0.34
COL12A1Q99715 BEAN1-211ENST00000622872 1171 ntAPPRIS P2 TSL 5 BASIC17.18■□□□□ 0.34
COL12A1Q99715 GPBAR1-202ENST00000519574 1382 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL12A1Q99715 BX119927.1-201ENST00000636596 1552 ntBASIC17.18■□□□□ 0.34
COL12A1Q99715 PDE9A-213ENST00000398236 1776 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL12A1Q99715 TMEM125-201ENST00000432792 1850 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL12A1Q99715 PAQR6-202ENST00000335852 2117 ntTSL 2 BASIC17.18■□□□□ 0.34
COL12A1Q99715 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC17.18■□□□□ 0.34
COL12A1Q99715 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC17.18■□□□□ 0.34
COL12A1Q99715 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL12A1Q99715 MRPL24-202ENST00000368211 883 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL12A1Q99715 CGB7-201ENST00000377280 918 ntAPPRIS P1 TSL 3 BASIC17.18■□□□□ 0.34
COL12A1Q99715 METTL21A-202ENST00000406927 1103 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL12A1Q99715 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC17.18■□□□□ 0.34
COL12A1Q99715 CYB561-214ENST00000582034 1193 ntTSL 2 BASIC17.18■□□□□ 0.34
COL12A1Q99715 SLC9A3-201ENST00000264938 2584 ntAPPRIS P3 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL12A1Q99715 ABHD17C-201ENST00000258884 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL12A1Q99715 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL12A1Q99715 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL12A1Q99715 AP006587.1-201ENST00000534129 1502 ntBASIC17.18■□□□□ 0.34
COL12A1Q99715 LINC01505-207ENST00000637185 1540 ntTSL 5 BASIC17.18■□□□□ 0.34
COL12A1Q99715 ABHD6-201ENST00000295962 2393 ntAPPRIS P1 TSL 1 (best) BASIC17.18■□□□□ 0.34
COL12A1Q99715 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC17.18■□□□□ 0.34
COL12A1Q99715 GPAA1-202ENST00000361036 1840 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL12A1Q99715 EDEM1-204ENST00000445686 1363 ntTSL 2 BASIC17.17■□□□□ 0.34
COL12A1Q99715 TMEM14A-201ENST00000211314 992 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL12A1Q99715 GJC3-201ENST00000312891 1116 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL12A1Q99715 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL12A1Q99715 AP000523.1-201ENST00000398242 1049 ntBASIC17.17■□□□□ 0.34
COL12A1Q99715 MIR1233-2-201ENST00000408138 82 ntBASIC17.17■□□□□ 0.34
COL12A1Q99715 MIR1233-1-201ENST00000408722 82 ntBASIC17.17■□□□□ 0.34
COL12A1Q99715 AL590627.1-203ENST00000421194 1026 ntBASIC17.17■□□□□ 0.34
COL12A1Q99715 AL353719.1-201ENST00000566847 864 ntBASIC17.17■□□□□ 0.34
COL12A1Q99715 FAM104A-205ENST00000581110 512 ntTSL 2 BASIC17.17■□□□□ 0.34
COL12A1Q99715 PEX10-202ENST00000447513 1997 ntAPPRIS P2 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL12A1Q99715 ETS1-207ENST00000531611 2134 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL12A1Q99715 BPIFB3-201ENST00000375494 1454 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL12A1Q99715 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL12A1Q99715 KLC2-207ENST00000421552 2721 ntTSL 5 BASIC17.17■□□□□ 0.34
COL12A1Q99715 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL12A1Q99715 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC17.17■□□□□ 0.34
COL12A1Q99715 PITHD1-201ENST00000246151 1603 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL12A1Q99715 AC016734.2-201ENST00000624325 1377 ntBASIC17.17■□□□□ 0.34
COL12A1Q99715 BSCL2-207ENST00000407022 1516 ntAPPRIS P3 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL12A1Q99715 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC17.17■□□□□ 0.34
COL12A1Q99715 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC17.17■□□□□ 0.34
COL12A1Q99715 AC139887.2-202ENST00000507446 534 ntTSL 4 BASIC17.17■□□□□ 0.34
COL12A1Q99715 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC17.17■□□□□ 0.34
COL12A1Q99715 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC17.17■□□□□ 0.34
COL12A1Q99715 FGF14-AS2-201ENST00000606448 1074 ntBASIC17.17■□□□□ 0.34
COL12A1Q99715 SRSF1-208ENST00000584773 1317 ntTSL 5 BASIC17.16■□□□□ 0.34
COL12A1Q99715 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC17.16■□□□□ 0.34
COL12A1Q99715 SLC9A3R1-201ENST00000262613 1969 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL12A1Q99715 POC1A-202ENST00000394970 1999 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL12A1Q99715 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL12A1Q99715 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL12A1Q99715 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL12A1Q99715 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC17.16■□□□□ 0.34
COL12A1Q99715 NXNL2-205ENST00000618633 739 ntTSL 5 BASIC17.16■□□□□ 0.34
COL12A1Q99715 DCAF15-201ENST00000254337 2278 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL12A1Q99715 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC17.16■□□□□ 0.34
COL12A1Q99715 MFF-203ENST00000349901 1716 ntTSL 2 BASIC17.16■□□□□ 0.34
COL12A1Q99715 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL12A1Q99715 STRA8-201ENST00000275764 993 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL12A1Q99715 VAMP5-201ENST00000306384 689 ntAPPRIS P1 TSL 1 (best) BASIC17.16■□□□□ 0.34
COL12A1Q99715 AL603832.1-201ENST00000421943 449 ntTSL 5 BASIC17.16■□□□□ 0.34
COL12A1Q99715 AC087498.1-201ENST00000572493 945 ntAPPRIS P1 BASIC17.16■□□□□ 0.34
COL12A1Q99715 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL12A1Q99715 DTX3-208ENST00000551632 1840 ntAPPRIS ALT1 TSL 2 BASIC17.15■□□□□ 0.34
COL12A1Q99715 RWDD3-202ENST00000370202 1235 ntAPPRIS P1 TSL 3 BASIC17.15■□□□□ 0.34
COL12A1Q99715 OLFM1-207ENST00000371801 568 ntTSL 2 BASIC17.15■□□□□ 0.34
COL12A1Q99715 SPSB1-203ENST00000377399 1007 ntAPPRIS P1 TSL 1 (best) BASIC17.15■□□□□ 0.34
COL12A1Q99715 STARP1-201ENST00000397973 869 ntBASIC17.15■□□□□ 0.34
COL12A1Q99715 AL035633.1-201ENST00000406139 838 ntBASIC17.15■□□□□ 0.34
COL12A1Q99715 KRT16P4-201ENST00000453883 522 ntBASIC17.15■□□□□ 0.34
COL12A1Q99715 ORAOV1-210ENST00000539414 817 ntAPPRIS ALT1 TSL 2 BASIC17.15■□□□□ 0.34
COL12A1Q99715 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC17.15■□□□□ 0.34
Retrieved 100 of 98,524 protein–RNA pairs in 19.3 ms