Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 CNPY2-201ENST00000273308 1214 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDX2Q99626 AL049795.1-201ENST00000373604 642 ntTSL 3 BASIC20.6■□□□□ 0.89
CDX2Q99626 CORT-201ENST00000377049 1130 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDX2Q99626 FAM239B-201ENST00000381106 1099 ntTSL 2 BASIC20.6■□□□□ 0.89
CDX2Q99626 RFXANK-202ENST00000392324 1059 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CDX2Q99626 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDX2Q99626 RPS14-203ENST00000407193 784 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CDX2Q99626 TSPY12P-201ENST00000421279 868 ntBASIC20.6■□□□□ 0.89
CDX2Q99626 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC20.6■□□□□ 0.89
CDX2Q99626 ENO1-AS1-201ENST00000442636 456 ntTSL 2 BASIC20.6■□□□□ 0.89
CDX2Q99626 AL611929.1-201ENST00000457340 449 ntTSL 3 BASIC20.6■□□□□ 0.89
CDX2Q99626 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC20.6■□□□□ 0.89
CDX2Q99626 AC004076.1-201ENST00000596831 664 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CDX2Q99626 TSTD3-202ENST00000636394 336 ntAPPRIS ALT2 TSL 3 BASIC20.6■□□□□ 0.89
CDX2Q99626 AC018553.1-201ENST00000616682 1458 ntBASIC20.6■□□□□ 0.89
CDX2Q99626 PTX4-201ENST00000293922 1422 ntAPPRIS P2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDX2Q99626 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDX2Q99626 ACOT2-205ENST00000622407 1604 ntAPPRIS ALT1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CDX2Q99626 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC20.59■□□□□ 0.89
CDX2Q99626 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.59■□□□□ 0.89
CDX2Q99626 TMEM230-206ENST00000379283 1660 ntAPPRIS P1 TSL 3 BASIC20.59■□□□□ 0.89
CDX2Q99626 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CDX2Q99626 GGT1-208ENST00000404920 657 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CDX2Q99626 PRSS21-202ENST00000450020 1106 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CDX2Q99626 GGTLC2-203ENST00000480559 657 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CDX2Q99626 AC097372.2-201ENST00000510996 732 ntTSL 3 BASIC20.59■□□□□ 0.89
CDX2Q99626 AP000867.3-201ENST00000524675 377 ntBASIC20.59■□□□□ 0.89
CDX2Q99626 KRT8P26-201ENST00000534154 1276 ntBASIC20.59■□□□□ 0.89
CDX2Q99626 AL355385.1-201ENST00000606123 409 ntBASIC20.59■□□□□ 0.89
CDX2Q99626 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC20.59■□□□□ 0.89
CDX2Q99626 TMEM237-213ENST00000621467 1824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDX2Q99626 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC20.59■□□□□ 0.89
CDX2Q99626 FAM124A-204ENST00000615498 2383 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CDX2Q99626 AC127496.7-201ENST00000625110 1798 ntBASIC20.59■□□□□ 0.89
CDX2Q99626 GTPBP8-203ENST00000383678 1360 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CDX2Q99626 TMEM176A-210ENST00000484928 1530 ntAPPRIS P2 TSL 5 BASIC20.58■□□□□ 0.89
CDX2Q99626 PEX16-202ENST00000378750 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CDX2Q99626 SUMF2-204ENST00000395436 1683 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CDX2Q99626 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CDX2Q99626 CYB561D2-201ENST00000232508 1225 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CDX2Q99626 ZNF575-201ENST00000314228 1298 ntAPPRIS P1 TSL 2 BASIC20.58■□□□□ 0.89
CDX2Q99626 CMTM1-204ENST00000336328 606 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CDX2Q99626 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CDX2Q99626 CHCHD2P8-201ENST00000429873 447 ntBASIC20.58■□□□□ 0.89
CDX2Q99626 LINC01128-207ENST00000449005 874 ntTSL 1 (best) BASIC20.58■□□□□ 0.89
CDX2Q99626 AC137630.1-201ENST00000452042 782 ntTSL 4 BASIC20.58■□□□□ 0.89
CDX2Q99626 CMTM1-213ENST00000529506 581 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CDX2Q99626 PLPP5-214ENST00000531823 875 ntTSL 3 BASIC20.58■□□□□ 0.89
CDX2Q99626 C12orf76-202ENST00000546627 461 ntTSL 4 BASIC20.58■□□□□ 0.89
CDX2Q99626 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CDX2Q99626 ME2-206ENST00000638410 2289 ntTSL 5 BASIC20.58■□□□□ 0.88
CDX2Q99626 ME2-210ENST00000639255 2262 ntTSL 5 BASIC20.58■□□□□ 0.88
CDX2Q99626 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC20.58■□□□□ 0.88
CDX2Q99626 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.88
CDX2Q99626 STOML1-201ENST00000316900 2169 ntTSL 2 BASIC20.58■□□□□ 0.88
CDX2Q99626 WISP2-202ENST00000372865 1518 ntTSL 1 (best) BASIC20.58■□□□□ 0.88
CDX2Q99626 FXYD3-203ENST00000435734 1467 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CDX2Q99626 TSPY2-201ENST00000320701 1161 ntAPPRIS P5 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDX2Q99626 RABEP2-201ENST00000357573 2175 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CDX2Q99626 BOLA1-201ENST00000369150 811 ntAPPRIS P1 TSL 3 BASIC20.57■□□□□ 0.88
CDX2Q99626 GAD2-202ENST00000376248 680 ntTSL 5 BASIC20.57■□□□□ 0.88
CDX2Q99626 GNB1L-203ENST00000405009 1076 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CDX2Q99626 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC20.57■□□□□ 0.88
CDX2Q99626 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC20.57■□□□□ 0.88
CDX2Q99626 AC093734.1-201ENST00000416100 242 ntTSL 3 BASIC20.57■□□□□ 0.88
CDX2Q99626 TSPY2-203ENST00000429039 779 ntAPPRIS ALT2 TSL 2 BASIC20.57■□□□□ 0.88
CDX2Q99626 ASCL5-202ENST00000458416 1420 ntAPPRIS P1 BASIC20.57■□□□□ 0.88
CDX2Q99626 RSRC1-211ENST00000480820 1410 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CDX2Q99626 HELT-202ENST00000505610 846 ntAPPRIS ALT1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDX2Q99626 DYNLL1-204ENST00000548214 616 ntTSL 2 BASIC20.57■□□□□ 0.88
CDX2Q99626 HDDC3-205ENST00000559898 1024 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CDX2Q99626 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CDX2Q99626 SPINK2-205ENST00000616980 677 ntTSL 5 BASIC20.57■□□□□ 0.88
CDX2Q99626 SCAMP4-213ENST00000621748 1172 ntAPPRIS P1 TSL 5 BASIC20.57■□□□□ 0.88
CDX2Q99626 VPS51-217ENST00000639871 243 ntTSL 5 BASIC20.57■□□□□ 0.88
CDX2Q99626 SPNS1-207ENST00000565975 1979 ntTSL 1 (best) BASIC20.57■□□□□ 0.88
CDX2Q99626 TSR2-201ENST00000375151 1534 ntAPPRIS P1 TSL 1 (best) BASIC20.57■□□□□ 0.88
CDX2Q99626 THNSL2-205ENST00000449349 1616 ntTSL 5 BASIC20.56■□□□□ 0.88
CDX2Q99626 IL9RP2-201ENST00000423948 1312 ntBASIC20.56■□□□□ 0.88
CDX2Q99626 P2RY6-207ENST00000538328 1425 ntAPPRIS P1 TSL 3 BASIC20.56■□□□□ 0.88
CDX2Q99626 TNFAIP3-207ENST00000614035 1430 ntTSL 5 BASIC20.56■□□□□ 0.88
CDX2Q99626 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC20.56■□□□□ 0.88
CDX2Q99626 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDX2Q99626 HAAO-201ENST00000294973 1265 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDX2Q99626 RPL36-201ENST00000347512 707 ntAPPRIS P1 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDX2Q99626 GRM5-203ENST00000393294 1268 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CDX2Q99626 C7orf34-201ENST00000409607 766 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDX2Q99626 KRT16P4-201ENST00000453883 522 ntBASIC20.56■□□□□ 0.88
CDX2Q99626 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC20.56■□□□□ 0.88
CDX2Q99626 LINC02317-201ENST00000555413 426 ntTSL 3 BASIC20.56■□□□□ 0.88
CDX2Q99626 AC104758.1-202ENST00000568184 602 ntTSL 3 BASIC20.56■□□□□ 0.88
CDX2Q99626 TEX45-201ENST00000361664 1679 ntAPPRIS P2 TSL 1 (best) BASIC20.56■□□□□ 0.88
CDX2Q99626 ANKHD1-221ENST00000616482 2064 ntTSL 1 (best) BASIC20.56■□□□□ 0.88
CDX2Q99626 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.56■□□□□ 0.88
CDX2Q99626 GPRC5C-205ENST00000481232 1592 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CDX2Q99626 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC20.55■□□□□ 0.88
CDX2Q99626 TMSB15B-202ENST00000436583 2186 ntAPPRIS P1 TSL 1 (best) BASIC20.55■□□□□ 0.88
CDX2Q99626 CABP4-202ENST00000438189 1426 ntTSL 1 (best) BASIC20.55■□□□□ 0.88
CDX2Q99626 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.55■□□□□ 0.88
CDX2Q99626 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC20.55■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms