Protein–RNA interactions for Protein: Q8N1M1

BEST3, Bestrophin-3, humanhuman

Predictions only

Length 668 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BEST3Q8N1M1 SNX21-213ENST00000614929 587 ntTSL 5 BASIC18.18■□□□□ 0.5
BEST3Q8N1M1 C19orf25-206ENST00000588849 1472 ntTSL 5 BASIC18.18■□□□□ 0.5
BEST3Q8N1M1 UNKL-205ENST00000397464 2180 ntTSL 2 BASIC18.18■□□□□ 0.5
BEST3Q8N1M1 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC18.18■□□□□ 0.5
BEST3Q8N1M1 WDR37-206ENST00000620998 1303 ntTSL 5 BASIC18.18■□□□□ 0.5
BEST3Q8N1M1 AATK-AS1-203ENST00000637878 1306 ntAPPRIS P1 TSL 5 BASIC18.18■□□□□ 0.5
BEST3Q8N1M1 FYN-204ENST00000368678 2573 ntAPPRIS ALT1 TSL 5 BASIC18.18■□□□□ 0.5
BEST3Q8N1M1 DYNLT3-201ENST00000378578 2217 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
BEST3Q8N1M1 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC18.18■□□□□ 0.5
BEST3Q8N1M1 METTL1-202ENST00000324871 2066 ntAPPRIS P1 TSL 1 (best) BASIC18.18■□□□□ 0.5
BEST3Q8N1M1 TFP1-202ENST00000475455 1573 ntBASIC18.17■□□□□ 0.5
BEST3Q8N1M1 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
BEST3Q8N1M1 CRACR2B-207ENST00000528542 1792 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
BEST3Q8N1M1 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC18.17■□□□□ 0.5
BEST3Q8N1M1 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC18.17■□□□□ 0.5
BEST3Q8N1M1 STK25-204ENST00000405585 1643 ntTSL 2 BASIC18.17■□□□□ 0.5
BEST3Q8N1M1 PLEKHH3-201ENST00000293349 2987 ntAPPRIS ALT1 TSL 5 BASIC18.17■□□□□ 0.5
BEST3Q8N1M1 RAP1B-203ENST00000378985 1017 ntTSL 2 BASIC18.17■□□□□ 0.5
BEST3Q8N1M1 CTNNBIP1-204ENST00000400904 1206 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
BEST3Q8N1M1 PLEKHB2-203ENST00000404460 1167 ntTSL 2 BASIC18.17■□□□□ 0.5
BEST3Q8N1M1 AC211429.1-201ENST00000415277 523 ntBASIC18.17■□□□□ 0.5
BEST3Q8N1M1 CCK-203ENST00000434608 747 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
BEST3Q8N1M1 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC18.17■□□□□ 0.5
BEST3Q8N1M1 AC016065.1-203ENST00000523225 1017 ntTSL 3 BASIC18.17■□□□□ 0.5
BEST3Q8N1M1 RPS20-210ENST00000523936 899 ntTSL 2 BASIC18.17■□□□□ 0.5
BEST3Q8N1M1 RAP1B-221ENST00000540209 1264 ntTSL 2 BASIC18.17■□□□□ 0.5
BEST3Q8N1M1 AC020913.2-201ENST00000601929 629 ntTSL 5 BASIC18.17■□□□□ 0.5
BEST3Q8N1M1 AL353708.3-201ENST00000610272 989 ntBASIC18.17■□□□□ 0.5
BEST3Q8N1M1 PHOSPHO2-206ENST00000616481 1252 ntAPPRIS P1 TSL 3 BASIC18.17■□□□□ 0.5
BEST3Q8N1M1 PHOSPHO2-208ENST00000617738 1053 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
BEST3Q8N1M1 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
BEST3Q8N1M1 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.17■□□□□ 0.5
BEST3Q8N1M1 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.17■□□□□ 0.5
BEST3Q8N1M1 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
BEST3Q8N1M1 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.17■□□□□ 0.5
BEST3Q8N1M1 SRI-203ENST00000419179 1307 ntTSL 2 BASIC18.17■□□□□ 0.5
BEST3Q8N1M1 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.17■□□□□ 0.5
BEST3Q8N1M1 ZNRF1-202ENST00000335325 4620 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
BEST3Q8N1M1 C5orf17-202ENST00000512559 1984 ntTSL 2 BASIC18.17■□□□□ 0.5
BEST3Q8N1M1 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC18.17■□□□□ 0.5
BEST3Q8N1M1 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC18.17■□□□□ 0.5
BEST3Q8N1M1 HMOX1-201ENST00000216117 1822 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
BEST3Q8N1M1 PHGDH-210ENST00000641115 1638 ntBASIC18.16■□□□□ 0.5
BEST3Q8N1M1 QKI-203ENST00000361752 9463 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
BEST3Q8N1M1 CCNO-201ENST00000282572 1433 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
BEST3Q8N1M1 MYL5-206ENST00000506838 2956 ntTSL 2 BASIC18.16■□□□□ 0.5
BEST3Q8N1M1 MRPL23-AS1-201ENST00000419080 1876 ntTSL 3 BASIC18.16■□□□□ 0.5
BEST3Q8N1M1 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC18.16■□□□□ 0.5
BEST3Q8N1M1 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.16■□□□□ 0.5
BEST3Q8N1M1 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.16■□□□□ 0.5
BEST3Q8N1M1 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.16■□□□□ 0.5
BEST3Q8N1M1 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC18.16■□□□□ 0.5
BEST3Q8N1M1 PHF11-218ENST00000496623 1173 ntAPPRIS ALT2 TSL 2 BASIC18.16■□□□□ 0.5
BEST3Q8N1M1 AC136628.4-201ENST00000520758 535 ntTSL 2 BASIC18.16■□□□□ 0.5
BEST3Q8N1M1 TNFRSF12A-206ENST00000575124 1133 ntTSL 2 BASIC18.16■□□□□ 0.5
BEST3Q8N1M1 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.16■□□□□ 0.5
BEST3Q8N1M1 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC18.16■□□□□ 0.5
BEST3Q8N1M1 RIMBP3B-201ENST00000620804 6105 ntAPPRIS P1 BASIC18.16■□□□□ 0.5
BEST3Q8N1M1 KXD1-202ENST00000539106 1496 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
BEST3Q8N1M1 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
BEST3Q8N1M1 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
BEST3Q8N1M1 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
BEST3Q8N1M1 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.15■□□□□ 0.5
BEST3Q8N1M1 VKORC1-202ENST00000319788 1077 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
BEST3Q8N1M1 IGHV3-73-201ENST00000390636 437 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
BEST3Q8N1M1 HYAL3-203ENST00000415204 959 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
BEST3Q8N1M1 MRPL36-202ENST00000505059 610 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
BEST3Q8N1M1 AC021087.1-201ENST00000512642 522 ntTSL 2 BASIC18.15■□□□□ 0.5
BEST3Q8N1M1 DEUP1-206ENST00000530273 410 ntTSL 3 BASIC18.15■□□□□ 0.5
BEST3Q8N1M1 CDC42EP2-202ENST00000533419 1279 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
BEST3Q8N1M1 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC18.15■□□□□ 0.5
BEST3Q8N1M1 DECR2-212ENST00000627716 352 ntTSL 2 BASIC18.15■□□□□ 0.5
BEST3Q8N1M1 SLC25A15-201ENST00000338625 1586 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
BEST3Q8N1M1 NTMT1-209ENST00000611055 1562 ntAPPRIS P1 TSL 3 BASIC18.15■□□□□ 0.5
BEST3Q8N1M1 AC027031.2-201ENST00000521369 1318 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
BEST3Q8N1M1 GALNT16-204ENST00000553669 1629 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
BEST3Q8N1M1 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
BEST3Q8N1M1 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC18.15■□□□□ 0.5
BEST3Q8N1M1 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
BEST3Q8N1M1 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC18.15■□□□□ 0.5
BEST3Q8N1M1 NMRAL1-213ENST00000574733 1719 ntAPPRIS P1 TSL 5 BASIC18.15■□□□□ 0.5
BEST3Q8N1M1 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
BEST3Q8N1M1 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC18.14■□□□□ 0.5
BEST3Q8N1M1 HEMK1-206ENST00000455834 1499 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.5
BEST3Q8N1M1 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.14■□□□□ 0.5
BEST3Q8N1M1 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
BEST3Q8N1M1 ZNRF3-203ENST00000544604 6851 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
BEST3Q8N1M1 MAP3K15-201ENST00000338883 4012 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
BEST3Q8N1M1 PRELID3B-201ENST00000355937 2626 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
BEST3Q8N1M1 AC007952.6-201ENST00000573168 2673 ntBASIC18.14■□□□□ 0.49
BEST3Q8N1M1 AC003957.1-201ENST00000625108 2673 ntBASIC18.14■□□□□ 0.49
BEST3Q8N1M1 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
BEST3Q8N1M1 NIFKP9-201ENST00000419265 221 ntBASIC18.14■□□□□ 0.49
BEST3Q8N1M1 KRT8P12-201ENST00000468527 998 ntTSL 2 BASIC18.14■□□□□ 0.49
BEST3Q8N1M1 STXBP1-203ENST00000476182 566 ntTSL 5 BASIC18.14■□□□□ 0.49
BEST3Q8N1M1 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC18.14■□□□□ 0.49
BEST3Q8N1M1 FMR1-AS1_2.1-201ENST00000613724 127 ntBASIC18.14■□□□□ 0.49
BEST3Q8N1M1 CR392000.1-201ENST00000624770 1228 ntBASIC18.14■□□□□ 0.49
BEST3Q8N1M1 DHRS11-210ENST00000611337 1341 ntTSL 5 BASIC18.14■□□□□ 0.49
BEST3Q8N1M1 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 48 ms