Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PPP4R4Q6NUP7 CHST11-205ENST00000549260 5696 ntAPPRIS ALT1 TSL 1 (best) BASIC18.73■□□□□ 0.59
PPP4R4Q6NUP7 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
PPP4R4Q6NUP7 KRT81-201ENST00000327741 1929 ntAPPRIS P2 TSL 1 (best) BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 TSC22D3-205ENST00000372390 1812 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 RCAN3-205ENST00000436717 2574 ntTSL 3 BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 PLAGL1-207ENST00000417959 1645 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 SLC35E4-201ENST00000343605 2714 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 AC245052.3-201ENST00000450182 901 ntBASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 IL34-204ENST00000566361 1001 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 FBXL12-203ENST00000586073 582 ntTSL 2 BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 UAP1-204ENST00000367926 2294 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 FGFBP3-201ENST00000311575 2545 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 ST3GAL4-205ENST00000449406 1669 ntTSL 5 BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 ADAP1-205ENST00000449296 2093 ntTSL 2 BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 PRR16-201ENST00000379551 1826 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 MYO9A-214ENST00000566885 5111 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 RAB7A-201ENST00000265062 2244 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 MTSS1L-204ENST00000616026 2241 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 TIMM13-201ENST00000215570 1973 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
PPP4R4Q6NUP7 CASR-204ENST00000638421 5088 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
PPP4R4Q6NUP7 PITX2-203ENST00000355080 2100 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PPP4R4Q6NUP7 RDH13-203ENST00000415061 1871 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PPP4R4Q6NUP7 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PPP4R4Q6NUP7 MFSD7-204ENST00000503156 1632 ntAPPRIS ALT2 TSL 5 BASIC18.71■□□□□ 0.59
PPP4R4Q6NUP7 PLEKHG5-207ENST00000400913 4698 ntAPPRIS P3 TSL 5 BASIC18.71■□□□□ 0.59
PPP4R4Q6NUP7 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC18.71■□□□□ 0.59
PPP4R4Q6NUP7 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
PPP4R4Q6NUP7 BAG4-202ENST00000432471 1943 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
PPP4R4Q6NUP7 DUT-202ENST00000455976 1935 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PPP4R4Q6NUP7 BRAF-201ENST00000288602 2480 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PPP4R4Q6NUP7 SAXO1-202ENST00000380534 2099 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
PPP4R4Q6NUP7 DACT2-204ENST00000610183 2088 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
PPP4R4Q6NUP7 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
PPP4R4Q6NUP7 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PPP4R4Q6NUP7 MANBAL-202ENST00000373606 1208 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PPP4R4Q6NUP7 NXNL2-201ENST00000375854 805 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
PPP4R4Q6NUP7 TERF1P5-201ENST00000477545 1207 ntBASIC18.71■□□□□ 0.59
PPP4R4Q6NUP7 TK2-208ENST00000545043 1120 ntTSL 2 BASIC18.71■□□□□ 0.59
PPP4R4Q6NUP7 DUX4L16-201ENST00000555130 1264 ntBASIC18.71■□□□□ 0.59
PPP4R4Q6NUP7 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC18.71■□□□□ 0.59
PPP4R4Q6NUP7 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC18.71■□□□□ 0.59
PPP4R4Q6NUP7 AC005181.1-201ENST00000604782 1256 ntBASIC18.71■□□□□ 0.59
PPP4R4Q6NUP7 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC18.71■□□□□ 0.59
PPP4R4Q6NUP7 KRT15-203ENST00000393976 2394 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
PPP4R4Q6NUP7 PPM1L-204ENST00000497343 1589 ntTSL 2 BASIC18.71■□□□□ 0.59
PPP4R4Q6NUP7 KRT24-201ENST00000264651 1881 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
PPP4R4Q6NUP7 SYBU-201ENST00000276646 2870 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
PPP4R4Q6NUP7 ZNF84-201ENST00000327668 7162 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 MEN1-201ENST00000312049 2761 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 GPR31-201ENST00000366834 2059 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 AC233280.1-201ENST00000423600 1684 ntTSL 2 BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 ST3GAL3-219ENST00000372374 2170 ntTSL 5 BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 MSANTD2-202ENST00000374979 2349 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 MEN1-206ENST00000377321 2614 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 PACSIN2-203ENST00000402229 1883 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 LINC02199-202ENST00000510067 1008 ntTSL 2 BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 MAFF-206ENST00000538320 2458 ntAPPRIS P1 TSL 4 BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 C5AR2-202ENST00000600626 1287 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 WT1-AS_3.1-201ENST00000613262 234 ntBASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 FGF8-207ENST00000618991 856 ntTSL 3 BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 TFG-210ENST00000620299 1289 ntTSL 5 BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 AC013268.1-206ENST00000638368 961 ntBASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 AC112229.1-201ENST00000639295 961 ntBASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 TNPO2-203ENST00000450764 4993 ntAPPRIS ALT1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 REPS2-201ENST00000303843 7771 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 ACVR1B-201ENST00000257963 4563 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 UBP1-202ENST00000283629 4148 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
PPP4R4Q6NUP7 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 50.7 ms