Protein–RNA interactions for Protein: Q3V6T2

CCDC88A, Girdin, humanhuman

Predictions only

Length 1,871 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88AQ3V6T2 HAGHL-203ENST00000389703 1347 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
CCDC88AQ3V6T2 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
CCDC88AQ3V6T2 S100A16-203ENST00000368705 956 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
CCDC88AQ3V6T2 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
CCDC88AQ3V6T2 COQ10B-203ENST00000409398 879 ntTSL 3 BASIC24.08■■□□□ 1.45
CCDC88AQ3V6T2 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC24.08■■□□□ 1.45
CCDC88AQ3V6T2 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC24.08■■□□□ 1.45
CCDC88AQ3V6T2 HMBS-214ENST00000542729 1469 ntTSL 2 BASIC24.08■■□□□ 1.44
CCDC88AQ3V6T2 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC24.07■■□□□ 1.44
CCDC88AQ3V6T2 CACNG5-202ENST00000533854 1311 ntAPPRIS P1 TSL 2 BASIC24.07■■□□□ 1.44
CCDC88AQ3V6T2 GPR27-201ENST00000304411 2447 ntAPPRIS P1 BASIC24.07■■□□□ 1.44
CCDC88AQ3V6T2 KCTD7-202ENST00000443322 1160 ntAPPRIS ALT1 TSL 1 (best) BASIC24.07■■□□□ 1.44
CCDC88AQ3V6T2 KRT18P38-201ENST00000449496 1282 ntBASIC24.07■■□□□ 1.44
CCDC88AQ3V6T2 PRAP1-202ENST00000463201 587 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
CCDC88AQ3V6T2 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC24.07■■□□□ 1.44
CCDC88AQ3V6T2 AP006587.1-201ENST00000534129 1502 ntBASIC24.07■■□□□ 1.44
CCDC88AQ3V6T2 FBXL19-205ENST00000562319 2462 ntAPPRIS ALT2 TSL 2 BASIC24.07■■□□□ 1.44
CCDC88AQ3V6T2 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC24.07■■□□□ 1.44
CCDC88AQ3V6T2 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC24.07■■□□□ 1.44
CCDC88AQ3V6T2 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC24.07■■□□□ 1.44
CCDC88AQ3V6T2 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC24.07■■□□□ 1.44
CCDC88AQ3V6T2 IRF5-214ENST00000613821 595 ntTSL 5 BASIC24.07■■□□□ 1.44
CCDC88AQ3V6T2 ZIC4-209ENST00000473123 1481 ntAPPRIS P1 TSL 2 BASIC24.06■■□□□ 1.44
CCDC88AQ3V6T2 B4GALNT1-213ENST00000552350 1649 ntTSL 4 BASIC24.06■■□□□ 1.44
CCDC88AQ3V6T2 TNIP1-205ENST00000518977 2200 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
CCDC88AQ3V6T2 RASD1-201ENST00000225688 1746 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
CCDC88AQ3V6T2 SH2B1-204ENST00000395532 2529 ntAPPRIS P1 TSL 2 BASIC24.06■■□□□ 1.44
CCDC88AQ3V6T2 AC004951.3-201ENST00000418645 1148 ntBASIC24.06■■□□□ 1.44
CCDC88AQ3V6T2 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC24.06■■□□□ 1.44
CCDC88AQ3V6T2 AC007161.3-201ENST00000469183 637 ntTSL 5 BASIC24.06■■□□□ 1.44
CCDC88AQ3V6T2 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC24.06■■□□□ 1.44
CCDC88AQ3V6T2 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC24.06■■□□□ 1.44
CCDC88AQ3V6T2 AP000692.2-201ENST00000608391 879 ntBASIC24.06■■□□□ 1.44
CCDC88AQ3V6T2 AC011298.2-201ENST00000617989 482 ntBASIC24.06■■□□□ 1.44
CCDC88AQ3V6T2 PTGER3-209ENST00000460330 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
CCDC88AQ3V6T2 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC24.06■■□□□ 1.44
CCDC88AQ3V6T2 SYNDIG1-201ENST00000376862 2522 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
CCDC88AQ3V6T2 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC24.06■■□□□ 1.44
CCDC88AQ3V6T2 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
CCDC88AQ3V6T2 NFIX-203ENST00000397661 3143 ntTSL 5 BASIC24.05■■□□□ 1.44
CCDC88AQ3V6T2 MTMR9LP-202ENST00000423995 1878 ntTSL 2 BASIC24.05■■□□□ 1.44
CCDC88AQ3V6T2 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC24.05■■□□□ 1.44
CCDC88AQ3V6T2 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC24.05■■□□□ 1.44
CCDC88AQ3V6T2 AC016582.2-201ENST00000591908 446 ntTSL 3 BASIC24.05■■□□□ 1.44
CCDC88AQ3V6T2 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC24.05■■□□□ 1.44
CCDC88AQ3V6T2 EPOR-208ENST00000592375 2086 ntTSL 2 BASIC24.05■■□□□ 1.44
CCDC88AQ3V6T2 WT1-212ENST00000640146 1554 ntAPPRIS P3 TSL 1 (best) BASIC24.05■■□□□ 1.44
CCDC88AQ3V6T2 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC24.05■■□□□ 1.44
CCDC88AQ3V6T2 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
CCDC88AQ3V6T2 RIOX1-201ENST00000304061 2429 ntAPPRIS P1 BASIC24.05■■□□□ 1.44
CCDC88AQ3V6T2 SPAG4-201ENST00000374273 1453 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
CCDC88AQ3V6T2 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
CCDC88AQ3V6T2 SAE1-201ENST00000270225 2049 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CCDC88AQ3V6T2 TCEAL2-201ENST00000329035 1080 ntAPPRIS P1 TSL 5 BASIC24.04■■□□□ 1.44
CCDC88AQ3V6T2 KRTAP5-10-201ENST00000398531 1176 ntAPPRIS P1 BASIC24.04■■□□□ 1.44
CCDC88AQ3V6T2 KRT8P17-201ENST00000453110 1448 ntBASIC24.04■■□□□ 1.44
CCDC88AQ3V6T2 AC116562.4-202ENST00000641738 218 ntBASIC24.04■■□□□ 1.44
CCDC88AQ3V6T2 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC24.04■■□□□ 1.44
CCDC88AQ3V6T2 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CCDC88AQ3V6T2 FBXO17-201ENST00000292852 2386 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CCDC88AQ3V6T2 OCIAD2-201ENST00000273860 636 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
CCDC88AQ3V6T2 AP2S1-202ENST00000352203 793 ntTSL 2 BASIC24.04■■□□□ 1.44
CCDC88AQ3V6T2 LCE4A-202ENST00000368777 672 ntAPPRIS P1 TSL 2 BASIC24.04■■□□□ 1.44
CCDC88AQ3V6T2 TNFRSF10C-202ENST00000397703 1242 ntTSL 2 BASIC24.04■■□□□ 1.44
CCDC88AQ3V6T2 UBE2J2-205ENST00000400930 1021 ntTSL 5 BASIC24.04■■□□□ 1.44
CCDC88AQ3V6T2 TSPY17P-201ENST00000450329 467 ntBASIC24.04■■□□□ 1.44
CCDC88AQ3V6T2 AC011498.2-201ENST00000588798 540 ntTSL 3 BASIC24.04■■□□□ 1.44
CCDC88AQ3V6T2 AP2S1-204ENST00000597020 707 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
CCDC88AQ3V6T2 OCIAD2-210ENST00000620187 697 ntTSL 3 BASIC24.04■■□□□ 1.44
CCDC88AQ3V6T2 SPACA6-213ENST00000637797 1073 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
CCDC88AQ3V6T2 GOLGA6L3-201ENST00000507199 1679 ntBASIC24.04■■□□□ 1.44
CCDC88AQ3V6T2 AC092720.2-201ENST00000602388 1665 ntBASIC24.04■■□□□ 1.44
CCDC88AQ3V6T2 SNHG10-201ENST00000500370 1531 ntTSL 2 BASIC24.04■■□□□ 1.44
CCDC88AQ3V6T2 MINOS1-NBL1-204ENST00000602662 1623 ntAPPRIS P1 TSL 2 BASIC24.04■■□□□ 1.44
CCDC88AQ3V6T2 POMGNT2-202ENST00000441964 2531 ntAPPRIS P1 TSL 4 BASIC24.04■■□□□ 1.44
CCDC88AQ3V6T2 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CCDC88AQ3V6T2 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC24.03■■□□□ 1.44
CCDC88AQ3V6T2 TMEM234-202ENST00000344461 721 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CCDC88AQ3V6T2 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC24.03■■□□□ 1.44
CCDC88AQ3V6T2 NAT6-202ENST00000417393 1163 ntAPPRIS ALT2 TSL 1 (best) BASIC24.03■■□□□ 1.44
CCDC88AQ3V6T2 PVRIG2P-201ENST00000435460 978 ntBASIC24.03■■□□□ 1.44
CCDC88AQ3V6T2 AC091153.3-201ENST00000497885 472 ntTSL 2 BASIC24.03■■□□□ 1.44
CCDC88AQ3V6T2 ANKRD34C-AS1-201ENST00000557790 594 ntTSL 3 BASIC24.03■■□□□ 1.44
CCDC88AQ3V6T2 ZNF444P1-201ENST00000559497 298 ntBASIC24.03■■□□□ 1.44
CCDC88AQ3V6T2 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC24.03■■□□□ 1.44
CCDC88AQ3V6T2 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CCDC88AQ3V6T2 ADRA1B-201ENST00000306675 2047 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CCDC88AQ3V6T2 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CCDC88AQ3V6T2 ETV7-206ENST00000615781 1776 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
CCDC88AQ3V6T2 DNAJC28-201ENST00000314399 1625 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
CCDC88AQ3V6T2 NRM-203ENST00000376421 1734 ntAPPRIS P2 TSL 1 (best) BASIC24.02■■□□□ 1.44
CCDC88AQ3V6T2 SLC50A1-201ENST00000303343 1137 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
CCDC88AQ3V6T2 FXN-203ENST00000396366 922 ntTSL 2 BASIC24.02■■□□□ 1.44
CCDC88AQ3V6T2 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC24.02■■□□□ 1.44
CCDC88AQ3V6T2 GCHFR-202ENST00000558467 785 ntTSL 2 BASIC24.02■■□□□ 1.44
CCDC88AQ3V6T2 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
CCDC88AQ3V6T2 IRF7-204ENST00000397570 1943 ntAPPRIS ALT2 TSL 1 (best) BASIC24.02■■□□□ 1.44
CCDC88AQ3V6T2 FLCN-203ENST00000389169 1692 ntTSL 1 (best) BASIC24.02■■□□□ 1.44
CCDC88AQ3V6T2 CALM2-201ENST00000272298 1302 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.44
CCDC88AQ3V6T2 CCAR2-214ENST00000613179 1421 ntTSL 5 BASIC24.02■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 24.7 ms