Protein–RNA interactions for Protein: P78413

IRX4, Iroquois-class homeodomain protein IRX-4, humanhuman

Predictions only

Length 519 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
IRX4P78413 AL645608.1-202ENST00000417705 1389 ntTSL 3 BASIC20.32■□□□□ 0.84
IRX4P78413 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
IRX4P78413 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC20.32■□□□□ 0.84
IRX4P78413 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC20.32■□□□□ 0.84
IRX4P78413 AC092720.2-201ENST00000602388 1665 ntBASIC20.32■□□□□ 0.84
IRX4P78413 ARSE-205ENST00000540563 1990 ntTSL 2 BASIC20.32■□□□□ 0.84
IRX4P78413 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.31■□□□□ 0.84
IRX4P78413 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC20.31■□□□□ 0.84
IRX4P78413 NKX6-1-201ENST00000295886 2628 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
IRX4P78413 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
IRX4P78413 ANHX-202ENST00000545940 3452 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
IRX4P78413 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.31■□□□□ 0.84
IRX4P78413 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC20.31■□□□□ 0.84
IRX4P78413 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC20.31■□□□□ 0.84
IRX4P78413 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
IRX4P78413 TSPAN4-209ENST00000409543 1031 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
IRX4P78413 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC20.31■□□□□ 0.84
IRX4P78413 AC008105.2-201ENST00000420431 579 ntTSL 4 BASIC20.31■□□□□ 0.84
IRX4P78413 C16orf90-202ENST00000437192 907 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
IRX4P78413 AC133681.1-201ENST00000465482 601 ntBASIC20.31■□□□□ 0.84
IRX4P78413 AC080023.1-201ENST00000526906 803 ntTSL 2 BASIC20.31■□□□□ 0.84
IRX4P78413 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC20.31■□□□□ 0.84
IRX4P78413 CRNDE-210ENST00000560912 459 ntTSL 5 BASIC20.31■□□□□ 0.84
IRX4P78413 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
IRX4P78413 CLDND2-203ENST00000601435 575 ntAPPRIS P1 TSL 3 BASIC20.31■□□□□ 0.84
IRX4P78413 SMIM8-209ENST00000608868 815 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
IRX4P78413 AC105020.6-201ENST00000621523 1217 ntBASIC20.31■□□□□ 0.84
IRX4P78413 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
IRX4P78413 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
IRX4P78413 NUF2-208ENST00000524800 1845 ntTSL 5 BASIC20.31■□□□□ 0.84
IRX4P78413 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC20.31■□□□□ 0.84
IRX4P78413 MBD3-201ENST00000156825 5518 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
IRX4P78413 GFER-201ENST00000248114 2345 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
IRX4P78413 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
IRX4P78413 RUVBL2-206ENST00000595090 2009 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
IRX4P78413 TBL1Y-203ENST00000383032 2407 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
IRX4P78413 QKI-205ENST00000392127 7911 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
IRX4P78413 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC20.3■□□□□ 0.84
IRX4P78413 ADCY5-202ENST00000462833 7311 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
IRX4P78413 AC087289.5-201ENST00000586076 3175 ntBASIC20.3■□□□□ 0.84
IRX4P78413 GPR35-201ENST00000319838 2249 ntAPPRIS P3 TSL 2 BASIC20.3■□□□□ 0.84
IRX4P78413 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
IRX4P78413 TUSC2-201ENST00000232496 1691 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
IRX4P78413 MBD1-216ENST00000587605 1945 ntTSL 2 BASIC20.3■□□□□ 0.84
IRX4P78413 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.3■□□□□ 0.84
IRX4P78413 PTPA-214ENST00000423100 988 ntTSL 2 BASIC20.3■□□□□ 0.84
IRX4P78413 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC20.3■□□□□ 0.84
IRX4P78413 DHDH-203ENST00000522614 776 ntTSL 5 BASIC20.3■□□□□ 0.84
IRX4P78413 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC20.3■□□□□ 0.84
IRX4P78413 YPEL3-207ENST00000566134 761 ntTSL 5 BASIC20.3■□□□□ 0.84
IRX4P78413 MIR4785-201ENST00000585005 73 ntBASIC20.3■□□□□ 0.84
IRX4P78413 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC20.3■□□□□ 0.84
IRX4P78413 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
IRX4P78413 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.3■□□□□ 0.84
IRX4P78413 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
IRX4P78413 DPP10-203ENST00000393147 2758 ntAPPRIS ALT2 TSL 1 (best) BASIC20.29■□□□□ 0.84
IRX4P78413 KLHL2-201ENST00000226725 3134 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
IRX4P78413 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
IRX4P78413 C3orf18-203ENST00000426034 2486 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
IRX4P78413 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC20.29■□□□□ 0.84
IRX4P78413 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
IRX4P78413 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
IRX4P78413 LCN8-201ENST00000371688 867 ntAPPRIS P2 TSL 1 (best) BASIC20.29■□□□□ 0.84
IRX4P78413 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.29■□□□□ 0.84
IRX4P78413 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.29■□□□□ 0.84
IRX4P78413 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC20.29■□□□□ 0.84
IRX4P78413 TK2-213ENST00000563369 882 ntTSL 5 BASIC20.29■□□□□ 0.84
IRX4P78413 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
IRX4P78413 HNRNPA3-204ENST00000435711 1731 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
IRX4P78413 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
IRX4P78413 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC20.29■□□□□ 0.84
IRX4P78413 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.29■□□□□ 0.84
IRX4P78413 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
IRX4P78413 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
IRX4P78413 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.28■□□□□ 0.84
IRX4P78413 SLC16A5-202ENST00000450736 2051 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
IRX4P78413 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
IRX4P78413 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
IRX4P78413 LMTK2-201ENST00000297293 8946 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
IRX4P78413 METRN-204ENST00000568223 3325 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
IRX4P78413 CLTA-202ENST00000345519 1073 ntAPPRIS ALT1 TSL 1 (best) BASIC20.28■□□□□ 0.84
IRX4P78413 H3F3A-204ENST00000366816 799 ntAPPRIS P1 TSL 3 BASIC20.28■□□□□ 0.84
IRX4P78413 RCN1P1-201ENST00000400413 996 ntBASIC20.28■□□□□ 0.84
IRX4P78413 AC239809.2-201ENST00000415381 517 ntBASIC20.28■□□□□ 0.84
IRX4P78413 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.28■□□□□ 0.84
IRX4P78413 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.28■□□□□ 0.84
IRX4P78413 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC20.28■□□□□ 0.84
IRX4P78413 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
IRX4P78413 CXCL2-202ENST00000508487 1218 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
IRX4P78413 TPD52L1-207ENST00000527711 999 ntTSL 2 BASIC20.28■□□□□ 0.84
IRX4P78413 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
IRX4P78413 FLT3LG-211ENST00000600429 984 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
IRX4P78413 C16orf74-202ENST00000602583 1237 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
IRX4P78413 AC120498.8-201ENST00000614275 531 ntBASIC20.28■□□□□ 0.84
IRX4P78413 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
IRX4P78413 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
IRX4P78413 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC20.28■□□□□ 0.84
IRX4P78413 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC20.28■□□□□ 0.84
IRX4P78413 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
IRX4P78413 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 23 ms