Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AC015712.2-203ENST00000560461 688 ntTSL 3 BASIC18.16■□□□□ 0.5
RNF4P78317 AC233702.5-201ENST00000584107 538 ntBASIC18.16■□□□□ 0.5
RNF4P78317 JOSD2-202ENST00000595669 733 ntTSL 2 BASIC18.16■□□□□ 0.5
RNF4P78317 IRF7-201ENST00000330243 1992 ntAPPRIS P4 TSL 5 BASIC18.16■□□□□ 0.5
RNF4P78317 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF4P78317 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF4P78317 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF4P78317 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC18.16■□□□□ 0.5
RNF4P78317 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC18.16■□□□□ 0.5
RNF4P78317 RBM14-RBM4-201ENST00000412278 1566 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
RNF4P78317 ZSCAN1-201ENST00000282326 2054 ntAPPRIS P1 TSL 2 BASIC18.16■□□□□ 0.5
RNF4P78317 PIGQ-206ENST00000422307 2052 ntTSL 3 BASIC18.16■□□□□ 0.5
RNF4P78317 DOK3-201ENST00000312943 2292 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RNF4P78317 MAP2K2-202ENST00000394867 1471 ntTSL 5 BASIC18.15■□□□□ 0.5
RNF4P78317 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC18.15■□□□□ 0.5
RNF4P78317 OBSL1-204ENST00000404537 5841 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF4P78317 RASL12-201ENST00000220062 2640 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF4P78317 LBX2-AS1-202ENST00000603175 2083 ntBASIC18.15■□□□□ 0.5
RNF4P78317 SMC5-AS1-201ENST00000594708 1818 ntTSL 2 BASIC18.15■□□□□ 0.5
RNF4P78317 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC18.15■□□□□ 0.5
RNF4P78317 AL353807.1-201ENST00000427475 662 ntBASIC18.15■□□□□ 0.5
RNF4P78317 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.15■□□□□ 0.5
RNF4P78317 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC18.15■□□□□ 0.5
RNF4P78317 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.15■□□□□ 0.5
RNF4P78317 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC18.15■□□□□ 0.5
RNF4P78317 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF4P78317 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF4P78317 MLST8-202ENST00000382450 1861 ntAPPRIS ALT1 TSL 2 BASIC18.15■□□□□ 0.5
RNF4P78317 MLST8-215ENST00000564088 1861 ntAPPRIS P3 TSL 2 BASIC18.15■□□□□ 0.5
RNF4P78317 TPBGL-201ENST00000562197 2793 ntAPPRIS P1 BASIC18.15■□□□□ 0.5
RNF4P78317 MOB3C-202ENST00000319928 2822 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
RNF4P78317 P2RY6-210ENST00000542092 1674 ntAPPRIS P1 TSL 2 BASIC18.15■□□□□ 0.5
RNF4P78317 KCNMA1-252ENST00000639120 2308 ntTSL 5 BASIC18.15■□□□□ 0.5
RNF4P78317 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF4P78317 PCSK6-217ENST00000618548 4269 ntAPPRIS ALT2 TSL 1 (best) BASIC18.15■□□□□ 0.5
RNF4P78317 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.5
RNF4P78317 WIPI2-203ENST00000401525 2112 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.5
RNF4P78317 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RNF4P78317 SPG7-202ENST00000341316 2288 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RNF4P78317 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC18.14■□□□□ 0.49
RNF4P78317 WWOX-202ENST00000402655 1594 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RNF4P78317 FAM66B-202ENST00000606573 2630 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RNF4P78317 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RNF4P78317 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.14■□□□□ 0.49
RNF4P78317 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
RNF4P78317 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.14■□□□□ 0.49
RNF4P78317 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC18.14■□□□□ 0.49
RNF4P78317 RPL29-204ENST00000479017 670 ntAPPRIS P1 TSL 3 BASIC18.14■□□□□ 0.49
RNF4P78317 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RNF4P78317 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC18.14■□□□□ 0.49
RNF4P78317 ISG20-210ENST00000560741 800 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
RNF4P78317 AF186192.3-201ENST00000583427 947 ntBASIC18.14■□□□□ 0.49
RNF4P78317 MRPL4-204ENST00000588502 827 ntTSL 2 BASIC18.14■□□□□ 0.49
RNF4P78317 AP001412.1-201ENST00000608405 714 ntBASIC18.14■□□□□ 0.49
RNF4P78317 SLC6A6-208ENST00000621751 1252 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RNF4P78317 AC004706.3-201ENST00000634558 1009 ntTSL 5 BASIC18.14■□□□□ 0.49
RNF4P78317 PSKH2-201ENST00000276616 1322 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RNF4P78317 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RNF4P78317 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC18.14■□□□□ 0.49
RNF4P78317 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC18.14■□□□□ 0.49
RNF4P78317 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC18.14■□□□□ 0.49
RNF4P78317 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RNF4P78317 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC18.14■□□□□ 0.49
RNF4P78317 ILKAP-201ENST00000254654 1490 ntAPPRIS P1 TSL 1 (best) BASIC18.14■□□□□ 0.49
RNF4P78317 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC18.14■□□□□ 0.49
RNF4P78317 HIC1-207ENST00000619757 6711 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RNF4P78317 PFKFB3-217ENST00000626882 1965 ntTSL 5 BASIC18.13■□□□□ 0.49
RNF4P78317 GALNT13-201ENST00000392825 5536 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
RNF4P78317 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RNF4P78317 DALRD3-205ENST00000440857 2014 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RNF4P78317 FAM131C-201ENST00000375662 1695 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RNF4P78317 ACY1-215ENST00000636358 1684 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RNF4P78317 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RNF4P78317 PML-204ENST00000359928 1726 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RNF4P78317 WBP2-213ENST00000590221 1745 ntAPPRIS ALT1 TSL 3 BASIC18.13■□□□□ 0.49
RNF4P78317 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC18.13■□□□□ 0.49
RNF4P78317 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RNF4P78317 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RNF4P78317 REXO2-216ENST00000544196 452 ntTSL 3 BASIC18.13■□□□□ 0.49
RNF4P78317 C1QL1P1-201ENST00000568105 661 ntBASIC18.13■□□□□ 0.49
RNF4P78317 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC18.13■□□□□ 0.49
RNF4P78317 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RNF4P78317 ISLR2-202ENST00000419208 2306 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RNF4P78317 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC18.13■□□□□ 0.49
RNF4P78317 MICU2-201ENST00000382374 1920 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RNF4P78317 APTR-204ENST00000440088 2029 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
RNF4P78317 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
RNF4P78317 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC18.13■□□□□ 0.49
RNF4P78317 WIPF2-202ENST00000394103 2378 ntAPPRIS ALT2 TSL 5 BASIC18.12■□□□□ 0.49
RNF4P78317 CFP-201ENST00000247153 1713 ntAPPRIS P2 TSL 5 BASIC18.12■□□□□ 0.49
RNF4P78317 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC18.12■□□□□ 0.49
RNF4P78317 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC18.12■□□□□ 0.49
RNF4P78317 TRIM46-204ENST00000368385 1864 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RNF4P78317 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC18.12■□□□□ 0.49
RNF4P78317 OGG1-217ENST00000449570 1948 ntTSL 5 BASIC18.12■□□□□ 0.49
RNF4P78317 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RNF4P78317 METTL27-201ENST00000297873 941 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
RNF4P78317 LIME1-201ENST00000309546 1178 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
RNF4P78317 DUT-201ENST00000331200 2147 ntTSL 1 (best) BASIC18.12■□□□□ 0.49
RNF4P78317 MDFI-202ENST00000373050 809 ntTSL 2 BASIC18.12■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms