Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 ALB-202ENST00000401494 1659 ntTSL 5 BASIC5.39□□□□□ -1.55
VPS35Q96QK1 ARHGEF3-203ENST00000413728 3992 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
VPS35Q96QK1 ZNF334-203ENST00000593880 2635 ntTSL 1 (best) BASIC5.39□□□□□ -1.55
VPS35Q96QK1 SCN1A-201ENST00000303395 8533 ntAPPRIS ALT1 TSL 5 BASIC5.39□□□□□ -1.55
VPS35Q96QK1 MRRF-208ENST00000394315 1501 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VPS35Q96QK1 AC011503.2-201ENST00000594230 1500 ntBASIC5.38□□□□□ -1.55
VPS35Q96QK1 TNFSF4-202ENST00000367718 3429 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VPS35Q96QK1 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VPS35Q96QK1 SPATA5-201ENST00000274008 8137 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
VPS35Q96QK1 RNA5SP183-201ENST00000362452 119 ntBASIC5.38□□□□□ -1.55
VPS35Q96QK1 SNORA16A-201ENST00000384342 137 ntBASIC5.38□□□□□ -1.55
VPS35Q96QK1 TRAV10-201ENST00000390432 379 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
VPS35Q96QK1 TRAJ38-201ENST00000390499 62 ntAPPRIS P1 BASIC5.38□□□□□ -1.55
VPS35Q96QK1 DBIP1-201ENST00000401435 260 ntBASIC5.38□□□□□ -1.55
VPS35Q96QK1 AL359636.2-201ENST00000412262 259 ntTSL 3 BASIC5.38□□□□□ -1.55
VPS35Q96QK1 DSTNP5-201ENST00000427921 523 ntBASIC5.38□□□□□ -1.55
VPS35Q96QK1 TXNDC12-AS1-201ENST00000428794 391 ntTSL 3 BASIC5.38□□□□□ -1.55
VPS35Q96QK1 GAPDHP25-201ENST00000447061 1001 ntBASIC5.38□□□□□ -1.55
VPS35Q96QK1 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC5.38□□□□□ -1.55
VPS35Q96QK1 AL035090.1-201ENST00000454835 332 ntBASIC5.38□□□□□ -1.55
VPS35Q96QK1 EPDR1-204ENST00000476620 555 ntTSL 4 BASIC5.38□□□□□ -1.55
VPS35Q96QK1 OR11I1P-201ENST00000486033 954 ntBASIC5.38□□□□□ -1.55
VPS35Q96QK1 SPINK9-202ENST00000511717 604 ntAPPRIS ALT2 TSL 5 BASIC5.38□□□□□ -1.55
VPS35Q96QK1 RNU4-18P-201ENST00000516751 149 ntBASIC5.38□□□□□ -1.55
VPS35Q96QK1 AC068672.3-201ENST00000524017 824 ntTSL 3 BASIC5.38□□□□□ -1.55
VPS35Q96QK1 ARL6IP1P3-201ENST00000524544 560 ntBASIC5.38□□□□□ -1.55
VPS35Q96QK1 GTF2H1-208ENST00000526630 932 ntTSL 2 BASIC5.38□□□□□ -1.55
VPS35Q96QK1 LINC02293-202ENST00000548385 358 ntTSL 3 BASIC5.38□□□□□ -1.55
VPS35Q96QK1 AC005341.1-201ENST00000571086 708 ntBASIC5.38□□□□□ -1.55
VPS35Q96QK1 RN7SL356P-201ENST00000582228 248 ntBASIC5.38□□□□□ -1.55
VPS35Q96QK1 AL359513.1-201ENST00000614364 557 ntBASIC5.38□□□□□ -1.55
VPS35Q96QK1 AC022467.1-201ENST00000614738 749 ntBASIC5.38□□□□□ -1.55
VPS35Q96QK1 AL122125.1-201ENST00000616999 600 ntBASIC5.38□□□□□ -1.55
VPS35Q96QK1 AC005840.5-201ENST00000619166 599 ntBASIC5.38□□□□□ -1.55
VPS35Q96QK1 LINC01708-202ENST00000634316 859 ntTSL 5 BASIC5.38□□□□□ -1.55
VPS35Q96QK1 CTAGE5-208ENST00000553352 3441 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VPS35Q96QK1 PLCH1-AS1-201ENST00000475196 1308 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VPS35Q96QK1 SDR42E1-201ENST00000328945 11566 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
VPS35Q96QK1 MAPRE2-202ENST00000413393 4173 ntAPPRIS ALT1 TSL 5 BASIC5.38□□□□□ -1.55
VPS35Q96QK1 PCDH15-207ENST00000395430 7002 ntTSL 5 BASIC5.38□□□□□ -1.55
VPS35Q96QK1 BANK1-203ENST00000444316 3141 ntTSL 2 BASIC5.38□□□□□ -1.55
VPS35Q96QK1 PHACTR2P1-201ENST00000605639 1414 ntBASIC5.38□□□□□ -1.55
VPS35Q96QK1 FOXN2-203ENST00000616844 1414 ntTSL 5 BASIC5.38□□□□□ -1.55
VPS35Q96QK1 GSTM2-206ENST00000442650 1478 ntTSL 5 BASIC5.38□□□□□ -1.55
VPS35Q96QK1 NDUFA5-207ENST00000471770 5608 ntTSL 1 (best) BASIC5.38□□□□□ -1.55
VPS35Q96QK1 C11orf65-208ENST00000615746 2711 ntAPPRIS P1 TSL 1 (best) BASIC5.38□□□□□ -1.55
VPS35Q96QK1 DYNC2H1-201ENST00000334267 2984 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
VPS35Q96QK1 MTUS1-202ENST00000297488 3731 ntAPPRIS ALT1 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS35Q96QK1 IQCH-202ENST00000358767 3062 ntTSL 5 BASIC5.37□□□□□ -1.55
VPS35Q96QK1 PDE5A-203ENST00000394439 6770 ntAPPRIS ALT2 TSL 5 BASIC5.37□□□□□ -1.55
VPS35Q96QK1 ALKBH3-AS1-201ENST00000499194 1906 ntTSL 2 BASIC5.37□□□□□ -1.55
VPS35Q96QK1 CTSV-203ENST00000538255 4322 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS35Q96QK1 OR11H6-201ENST00000315519 993 ntAPPRIS P1 BASIC5.37□□□□□ -1.55
VPS35Q96QK1 RN7SKP162-201ENST00000363605 345 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 RNA5SP339-201ENST00000390987 122 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 AL391361.1-201ENST00000405580 489 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 RNU6ATAC18P-201ENST00000408413 101 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 RNA5SP487-201ENST00000410186 122 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 NPM1P4-201ENST00000414095 812 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 OR6C64P-201ENST00000419708 825 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 MAGI2-AS1-201ENST00000428298 472 ntTSL 3 BASIC5.37□□□□□ -1.55
VPS35Q96QK1 GSTM5P1-201ENST00000434751 660 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 AC023271.1-201ENST00000445936 1090 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 AC011225.1-201ENST00000457751 369 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 EIF3LP3-201ENST00000495197 822 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 SPTSSB-202ENST00000497137 880 ntAPPRIS P1 TSL 3 BASIC5.37□□□□□ -1.55
VPS35Q96QK1 AC093607.1-202ENST00000499715 559 ntTSL 4 BASIC5.37□□□□□ -1.55
VPS35Q96QK1 AC113398.2-201ENST00000507630 558 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 MTCO3P42-201ENST00000509488 518 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 SPRY4-AS1-205ENST00000514303 152 ntTSL 3 BASIC5.37□□□□□ -1.55
VPS35Q96QK1 MTCO3P39-201ENST00000514812 518 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 AC079064.1-201ENST00000528365 362 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 TEX49-202ENST00000548380 573 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS35Q96QK1 OR11H3P-201ENST00000554547 982 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 AL390334.1-201ENST00000556395 450 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 LINC01904-201ENST00000564872 861 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
VPS35Q96QK1 AC018557.2-201ENST00000565082 536 ntTSL 5 BASIC5.37□□□□□ -1.55
VPS35Q96QK1 AC087190.2-201ENST00000565648 731 ntTSL 3 BASIC5.37□□□□□ -1.55
VPS35Q96QK1 RN7SL753P-201ENST00000581238 290 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 MIR4660-201ENST00000583549 74 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 AC010615.3-201ENST00000597319 394 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 IMMP1LP3-201ENST00000604197 224 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 AP005212.4-201ENST00000614206 710 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 MIR6729-201ENST00000618194 65 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 MIR6837-201ENST00000620884 64 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 AC135068.5-201ENST00000624197 983 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 AC021766.1-201ENST00000624404 741 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 AP2B1-222ENST00000628168 192 ntTSL 5 BASIC5.37□□□□□ -1.55
VPS35Q96QK1 LINC01685-203ENST00000634464 1201 ntTSL 5 BASIC5.37□□□□□ -1.55
VPS35Q96QK1 METTL15-211ENST00000634762 718 ntTSL 5 BASIC5.37□□□□□ -1.55
VPS35Q96QK1 WDR12-201ENST00000261015 8100 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS35Q96QK1 AC092111.2-201ENST00000611627 1414 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 IBTK-206ENST00000503631 3560 ntTSL 1 (best) BASIC5.37□□□□□ -1.55
VPS35Q96QK1 AC138409.2-201ENST00000514048 5001 ntTSL 5 BASIC5.37□□□□□ -1.55
VPS35Q96QK1 RAPGEF4-215ENST00000540783 3974 ntTSL 2 BASIC5.37□□□□□ -1.55
VPS35Q96QK1 PPEF1-202ENST00000361511 2890 ntAPPRIS P1 TSL 1 (best) BASIC5.37□□□□□ -1.55
VPS35Q96QK1 AC104964.3-201ENST00000606115 2860 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 SLC38A9-218ENST00000512595 1756 ntTSL 2 BASIC5.37□□□□□ -1.55
VPS35Q96QK1 AC100757.1-201ENST00000616872 1835 ntBASIC5.37□□□□□ -1.55
VPS35Q96QK1 HMMR-203ENST00000393915 3102 ntAPPRIS ALT2 TSL 1 (best) BASIC5.37□□□□□ -1.55
Retrieved 100 of 98,524 protein–RNA pairs in 87.4 ms