Protein–RNA interactions for Protein: Q8N4P3

HDDC3, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1, humanhuman

Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3Q8N4P3 MFSD4BP1-201ENST00000513330 1552 ntBASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 ARID2-202ENST00000422737 5481 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 DCLK1-204ENST00000379893 4612 ntTSL 2 BASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 CASP1-208ENST00000527979 1521 ntTSL 5 BASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 KCNH5-201ENST00000322893 11290 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 MEMO1-202ENST00000379383 1498 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 UGT2B17-201ENST00000317746 2077 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 ZNF788-203ENST00000430298 3941 ntTSL 2 BASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 USF3-202ENST00000478658 8461 ntAPPRIS P2 TSL 5 BASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 RPL23P2-201ENST00000320371 421 ntBASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 SPANXN1-201ENST00000370493 1276 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 RPA2P2-201ENST00000419698 796 ntBASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 SETP10-201ENST00000424368 814 ntBASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 AC073410.1-201ENST00000435125 589 ntBASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 AC006466.1-201ENST00000438721 289 ntBASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 MORF4L1P4-201ENST00000450245 976 ntBASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 AL035409.1-201ENST00000454305 497 ntTSL 2 BASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 AC034195.1-203ENST00000455703 728 ntTSL 2 BASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 LINC01158-205ENST00000458253 747 ntTSL 5 BASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 RPL35AP28-201ENST00000459730 331 ntBASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 RN7SL222P-201ENST00000476452 299 ntBASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 PGAM1P13-201ENST00000507497 754 ntBASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 AC078878.1-201ENST00000539832 958 ntBASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 LINC02552-203ENST00000545630 583 ntTSL 2 BASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 AC110023.1-201ENST00000554318 457 ntTSL 3 BASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 AL121790.1-201ENST00000554829 738 ntTSL 3 BASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 AC055855.3-201ENST00000564269 578 ntTSL 2 BASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 SLC14A2-AS1-204ENST00000592899 359 ntTSL 3 BASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 AC007193.1-201ENST00000599645 448 ntTSL 5 BASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 AC000068.2-201ENST00000608816 460 ntBASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 AC006840.1-201ENST00000623069 542 ntBASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 AC079298.3-201ENST00000624941 977 ntTSL 3 BASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 INPP4B-214ENST00000508116 3165 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 HHLA2-211ENST00000619531 2548 ntAPPRIS P3 TSL 5 BASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 MAP3K19-204ENST00000392915 5030 ntAPPRIS P3 TSL 5 BASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 TRPC4-205ENST00000379679 2475 ntTSL 1 (best) BASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 FOXN2-201ENST00000340553 5408 ntAPPRIS P1 TSL 1 (best) BASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 LRRC36-202ENST00000435835 1765 ntTSL 2 BASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 HDAC9-203ENST00000406072 4102 ntTSL 5 BASIC5.59□□□□□ -1.51
HDDC3Q8N4P3 SGO2-201ENST00000357799 4214 ntAPPRIS P2 TSL 1 (best) BASIC5.59□□□□□ -1.52
HDDC3Q8N4P3 MT-RNR2-201ENST00000387347 1559 ntBASIC5.59□□□□□ -1.52
HDDC3Q8N4P3 RLIMP2-201ENST00000427891 1563 ntBASIC5.59□□□□□ -1.52
HDDC3Q8N4P3 PCGEM1-201ENST00000454040 1590 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
HDDC3Q8N4P3 UACA-211ENST00000560441 4723 ntAPPRIS ALT2 TSL 5 BASIC5.59□□□□□ -1.52
HDDC3Q8N4P3 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC5.59□□□□□ -1.52
HDDC3Q8N4P3 PHACTR4-201ENST00000373836 3107 ntAPPRIS P4 TSL 5 BASIC5.59□□□□□ -1.52
HDDC3Q8N4P3 ADGRG2-203ENST00000356606 4630 ntTSL 1 (best) BASIC5.59□□□□□ -1.52
HDDC3Q8N4P3 AL360270.2-201ENST00000562952 5985 ntBASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 PCDH15-215ENST00000409834 5401 ntTSL 5 BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 ATXN2-215ENST00000542287 3443 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 NOL8-221ENST00000542053 3393 ntTSL 5 BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 PSG1-202ENST00000312439 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 PSMD6-202ENST00000394431 1349 ntTSL 1 (best) BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 OR5H1-201ENST00000354565 942 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 U8.4-201ENST00000363626 134 ntBASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 GPR52-201ENST00000367685 1088 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 RPL11P3-201ENST00000395256 523 ntBASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 AL049649.1-202ENST00000412405 414 ntTSL 3 BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 RBMY2KP-201ENST00000418221 992 ntBASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 AC073333.1-201ENST00000418907 648 ntTSL 3 BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 ARAFP1-201ENST00000422172 605 ntBASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 LINC01798-203ENST00000428590 553 ntTSL 4 BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 HMGB3P10-201ENST00000434734 572 ntBASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 ELOCP3-201ENST00000439303 348 ntBASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 AC009963.4-201ENST00000448535 339 ntBASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 AC013733.1-201ENST00000449835 985 ntTSL 4 BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 FCF1P7-201ENST00000451185 558 ntBASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 RPL7P61-201ENST00000451721 751 ntBASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 BIRC6-AS1-201ENST00000455572 697 ntTSL 3 BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 OR11I1P-201ENST00000486033 954 ntBASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 RN7SL447P-201ENST00000494711 245 ntBASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 LINC02499-201ENST00000502291 763 ntTSL 3 BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 LINC02200-202ENST00000508879 615 ntTSL 3 BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 AC105177.1-201ENST00000523110 555 ntTSL 4 BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 AC084033.1-201ENST00000550830 633 ntBASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 AC122134.1-201ENST00000565664 1104 ntBASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 BCAR4-204ENST00000573319 1273 ntTSL 5 BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 ARL2BPP3-202ENST00000580773 420 ntTSL 5 BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 SMIM24-204ENST00000591708 660 ntAPPRIS ALT2 TSL 2 BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 AC024563.1-201ENST00000601860 618 ntTSL 2 BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 AC126915.2-201ENST00000610957 190 ntBASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 PACRG-210ENST00000611387 279 ntTSL 5 BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 AC100827.5-201ENST00000615883 426 ntBASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 WBP1LP8-201ENST00000617401 327 ntBASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 SYNJ2BP-COX16-205ENST00000621525 929 ntAPPRIS P2 TSL 2 BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 DCN-218ENST00000551354 2924 ntTSL 3 BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 GPR87-201ENST00000260843 1608 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 CKAP5-210ENST00000529230 7121 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 XPNPEP3-201ENST00000357137 7988 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 RYR3-212ENST00000634891 15591 ntAPPRIS P3 TSL 1 (best) BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 MDN1-201ENST00000369393 18413 ntAPPRIS P1 TSL 1 (best) BASIC5.58□□□□□ -1.52
HDDC3Q8N4P3 AL121594.3-201ENST00000557565 3857 ntAPPRIS P1 TSL 2 BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 PCGF5-201ENST00000336126 7018 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 SLC4A7-206ENST00000428386 7385 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 NRDE2-201ENST00000354366 14208 ntAPPRIS P1 TSL 1 (best) BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 AC011933.2-201ENST00000578539 2790 ntBASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 GRAMD2B-202ENST00000502348 1363 ntTSL 2 BASIC5.57□□□□□ -1.52
HDDC3Q8N4P3 BTG4-203ENST00000525791 1394 ntTSL 1 (best) BASIC5.57□□□□□ -1.52
Retrieved 100 of 98,524 protein–RNA pairs in 81.3 ms