Protein–RNA interactions for Protein: Q3KNS1

PTCHD3, Patched domain-containing protein 3, humanhuman

Predictions only

Length 767 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD3Q3KNS1 AC012254.3-201ENST00000591183 2117 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 AC011503.1-201ENST00000596326 1585 ntTSL 2 BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 PIGN-239ENST00000639902 4439 ntTSL 5 BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 KLRC1-202ENST00000359151 1407 ntAPPRIS P4 TSL 1 (best) BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 PREPL-216ENST00000541738 6049 ntTSL 2 BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 PPBP-201ENST00000296028 715 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 RPL39-201ENST00000361575 401 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 SNORD56.4-201ENST00000363883 71 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 RNA5SP435-201ENST00000364044 108 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 SPRR2E-202ENST00000368751 692 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 CRYZ-203ENST00000370871 1292 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 RPL5P19-201ENST00000404228 893 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 NACAP7-201ENST00000407371 609 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 AC092652.1-202ENST00000413315 587 ntTSL 4 BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 XKRYP4-201ENST00000414395 483 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 RPL35AP3-201ENST00000414680 288 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 AL355339.1-202ENST00000417542 458 ntTSL 2 BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 EIF4A1P1-201ENST00000420241 934 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 AC009506.2-201ENST00000420635 840 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 DEFB130D-201ENST00000426866 237 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 AL355339.1-201ENST00000434386 435 ntTSL 2 BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 AL445928.1-201ENST00000435545 222 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 AC005077.1-201ENST00000449226 375 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 XKRYP5-201ENST00000449659 483 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 SETP20-201ENST00000457046 852 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 RN7SL269P-201ENST00000467795 305 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 AC023245.1-201ENST00000468501 517 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 PFN1P6-201ENST00000476786 399 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 AC092865.4-201ENST00000477936 615 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 METTL15P1-201ENST00000481421 1045 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 AC104109.1-201ENST00000498563 436 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 LINC00483-204ENST00000502517 940 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 AC020699.1-201ENST00000505161 445 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 AC017091.1-202ENST00000510941 504 ntTSL 3 BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 AC034223.2-201ENST00000511840 425 ntTSL 3 BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 RNU6-276P-201ENST00000516114 96 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 IGLVIV-64-201ENST00000518581 301 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 AC008601.1-201ENST00000519892 527 ntTSL 4 BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 CREBZF-209ENST00000534224 545 ntTSL 4 BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 MS4A3-208ENST00000534744 507 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 OR9A4-201ENST00000548136 1093 ntAPPRIS P1 BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 LINC00929-203ENST00000556213 713 ntTSL 2 BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 LINC00254-201ENST00000563416 662 ntTSL 3 BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 AC007346.2-201ENST00000564816 892 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 AC091151.1-201ENST00000587369 726 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 AC090236.2-201ENST00000587933 1101 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 AC008752.1-201ENST00000590046 408 ntTSL 3 BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 SETSIP-202ENST00000596516 909 ntAPPRIS P2 BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 AC027243.2-201ENST00000602530 724 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 AC093424.1-201ENST00000604999 338 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 AC087683.2-201ENST00000611384 326 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 Metazoa_SRP.70-201ENST00000612622 273 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 SSX4B-202ENST00000619890 1092 ntTSL 5 BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 SSX4-202ENST00000620320 1092 ntTSL 5 BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 AC073052.2-202ENST00000622296 775 ntTSL 5 BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 LINC00254-202ENST00000633813 439 ntTSL 3 BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 PRLR-201ENST00000231423 1679 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 WDR63-202ENST00000326813 2888 ntAPPRIS ALT2 TSL 2 BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 AC005162.3-201ENST00000609389 3695 ntTSL 5 BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 ESRRG-206ENST00000366938 5274 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 AC140134.1-201ENST00000511830 3544 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 NCOA7-208ENST00000438495 3133 ntAPPRIS ALT1 TSL 1 (best) BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 ZNF300P1-202ENST00000520773 3115 ntTSL 5 BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 GLRA2-204ENST00000443437 3182 ntTSL 2 BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 PDZRN4-203ENST00000539469 3041 ntTSL 1 (best) BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 AL359955.1-201ENST00000455242 3275 ntBASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 ZNF266-207ENST00000592904 4401 ntAPPRIS P1 TSL 1 (best) BASIC5.77□□□□□ -1.49
PTCHD3Q3KNS1 RASSF8-201ENST00000282884 1994 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 KLHL28-202ENST00000396128 6545 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 TCF7L2-217ENST00000536810 3953 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 AF287957.1-201ENST00000607368 1595 ntBASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 OR8G5-203ENST00000641992 1560 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 ZFYVE9-202ENST00000357206 4567 ntAPPRIS ALT1 TSL 1 (best) BASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 SETDB2-205ENST00000611815 5313 ntAPPRIS ALT2 TSL 5 BASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 RFX3-212ENST00000617270 9253 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 NSF-206ENST00000575068 2667 ntTSL 2 BASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 GPR18-201ENST00000340807 1698 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 SSH2-201ENST00000269033 9327 ntAPPRIS P3 TSL 1 (best) BASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 LRRK2-201ENST00000298910 9158 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 LINC00891-201ENST00000627173 4113 ntTSL 2 BASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 TERB1-203ENST00000558713 2257 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 RIC3-202ENST00000335425 5223 ntTSL 1 (best) BASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 ZNF571-202ENST00000358744 2049 ntAPPRIS P1 TSL 2 BASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 AC020656.2-201ENST00000613291 5309 ntBASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 AL355834.1-201ENST00000556602 3965 ntBASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 IFIT2-203ENST00000638108 3703 ntAPPRIS P2 TSL 5 BASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 MTRNR2L3-201ENST00000543500 1539 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 TRAPPC13-202ENST00000399438 3221 ntAPPRIS ALT1 TSL 2 BASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 MGST1-201ENST00000010404 901 ntAPPRIS P1 TSL 5 BASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 OR11H1-201ENST00000252835 982 ntAPPRIS P1 BASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 MGST1-203ENST00000396207 909 ntAPPRIS P1 TSL 1 (best) BASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 AL354890.1-201ENST00000413730 346 ntBASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 VPS26BP1-201ENST00000417155 755 ntBASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 AC092687.1-201ENST00000418835 389 ntTSL 3 BASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 LINC01501-201ENST00000427523 409 ntTSL 3 BASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 CETN4P-201ENST00000432407 469 ntBASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 AC073410.1-201ENST00000435125 589 ntBASIC5.76□□□□□ -1.49
PTCHD3Q3KNS1 AL663074.2-201ENST00000440621 479 ntBASIC5.76□□□□□ -1.49
Retrieved 100 of 98,524 protein–RNA pairs in 107.1 ms