Protein–RNA interactions for Protein: P49639

HOXA1, Homeobox protein Hox-A1, humanhuman

Predicted RBP Predictions only

Length 335 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXA1P49639 HMGN2-210ENST00000619352 1148 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
HOXA1P49639 AC090617.9-201ENST00000623751 147 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 AC006927.4-201ENST00000639187 543 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 OR56A4-203ENST00000641279 1209 ntAPPRIS P1 BASIC4.8□□□□□ -1.64
HOXA1P49639 LINC02010-202ENST00000471638 1829 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HOXA1P49639 GABRA1-218ENST00000637827 1838 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
HOXA1P49639 R3HCC1L-202ENST00000314594 3198 ntAPPRIS P1 TSL 5 BASIC4.8□□□□□ -1.64
HOXA1P49639 OR4E1-202ENST00000641792 3742 ntAPPRIS P5 BASIC4.8□□□□□ -1.64
HOXA1P49639 TOX3-202ENST00000407228 3124 ntAPPRIS ALT2 TSL 2 BASIC4.8□□□□□ -1.64
HOXA1P49639 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC4.8□□□□□ -1.64
HOXA1P49639 ZBED6-201ENST00000545588 7979 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HOXA1P49639 CLUL1-205ENST00000579494 1742 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
HOXA1P49639 TJP1-202ENST00000356107 6747 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
HOXA1P49639 OR51H2P-202ENST00000641424 3046 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 KLF12-201ENST00000377669 10637 ntAPPRIS P1 TSL 1 (best) BASIC4.8□□□□□ -1.64
HOXA1P49639 LRRTM4-203ENST00000409282 2451 ntTSL 1 (best) BASIC4.8□□□□□ -1.64
HOXA1P49639 DYNC1I2-225ENST00000508530 2494 ntAPPRIS ALT1 TSL 1 (best) BASIC4.8□□□□□ -1.64
HOXA1P49639 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.8□□□□□ -1.64
HOXA1P49639 STX3-208ENST00000641815 3236 ntBASIC4.8□□□□□ -1.64
HOXA1P49639 DYNC1I2-207ENST00000410079 2159 ntTSL 2 BASIC4.8□□□□□ -1.64
HOXA1P49639 MAPKAPK5P1-201ENST00000431810 1376 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 ZNF215-205ENST00000529903 1396 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HOXA1P49639 PRTG-201ENST00000389286 11967 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HOXA1P49639 CASC19-204ENST00000641001 2055 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 CEACAM1-213ENST00000599389 1342 ntTSL 5 BASIC4.79□□□□□ -1.64
HOXA1P49639 SSR1-202ENST00000397511 3248 ntTSL 5 BASIC4.79□□□□□ -1.64
HOXA1P49639 ZFP14-201ENST00000270001 7489 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HOXA1P49639 KARSP1-201ENST00000451871 1752 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 ZBTB38-220ENST00000514251 7683 ntAPPRIS P1 TSL 2 BASIC4.79□□□□□ -1.64
HOXA1P49639 ZNF230-201ENST00000429154 4115 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HOXA1P49639 LRRC37A-203ENST00000496930 3860 ntTSL 2 BASIC4.79□□□□□ -1.64
HOXA1P49639 CTAGE5-204ENST00000341749 2912 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HOXA1P49639 AL353740.1-201ENST00000366253 575 ntTSL 2 BASIC4.79□□□□□ -1.64
HOXA1P49639 TRGV5-201ENST00000390344 552 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
HOXA1P49639 AL157702.1-201ENST00000398764 426 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 GSTA12P-201ENST00000402398 508 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 AL132875.1-201ENST00000403623 949 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 AC245096.1-201ENST00000413104 546 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 AL807757.2-201ENST00000416455 779 ntTSL 3 BASIC4.79□□□□□ -1.64
HOXA1P49639 NIFKP3-201ENST00000417799 865 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 AC018878.1-201ENST00000419904 433 ntTSL 3 BASIC4.79□□□□□ -1.64
HOXA1P49639 RPL12P12-201ENST00000424633 501 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 AC104843.2-201ENST00000427666 297 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 AL162408.1-201ENST00000428853 433 ntTSL 5 BASIC4.79□□□□□ -1.64
HOXA1P49639 LINC01506-201ENST00000432148 495 ntTSL 2 BASIC4.79□□□□□ -1.64
HOXA1P49639 AL031186.1-201ENST00000433125 385 ntTSL 3 BASIC4.79□□□□□ -1.64
HOXA1P49639 AC094019.1-201ENST00000434678 472 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 AL356121.1-201ENST00000442911 156 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 AL031681.1-201ENST00000443304 400 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 AL512593.1-201ENST00000444758 779 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 AL096829.2-201ENST00000446582 742 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 AL354989.1-201ENST00000448245 635 ntTSL 3 BASIC4.79□□□□□ -1.64
HOXA1P49639 LINC01809-201ENST00000448431 303 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HOXA1P49639 RPSAP37-201ENST00000470913 821 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 AC022795.1-201ENST00000473808 480 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 RN7SL836P-201ENST00000476140 296 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 PFN1P6-201ENST00000476786 399 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 AC008410.1-201ENST00000483777 339 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 RPL34P33-201ENST00000486062 334 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 CREM-238ENST00000488741 651 ntTSL 2 BASIC4.79□□□□□ -1.64
HOXA1P49639 AC079858.1-201ENST00000507842 448 ntTSL 3 BASIC4.79□□□□□ -1.64
HOXA1P49639 GIN1-203ENST00000508629 1040 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HOXA1P49639 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC4.79□□□□□ -1.64
HOXA1P49639 OCIAD1-216ENST00000509122 1204 ntTSL 5 BASIC4.79□□□□□ -1.64
HOXA1P49639 NR1I3-229ENST00000511748 480 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HOXA1P49639 AC098829.1-202ENST00000513384 537 ntTSL 3 BASIC4.79□□□□□ -1.64
HOXA1P49639 RNA5SP360-201ENST00000516555 118 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 RAD21-203ENST00000517749 1003 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HOXA1P49639 AC113191.1-201ENST00000517759 403 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 LINC02237-201ENST00000521753 805 ntTSL 3 BASIC4.79□□□□□ -1.64
HOXA1P49639 AC022882.1-201ENST00000532142 501 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 AP001893.3-201ENST00000532357 569 ntTSL 4 BASIC4.79□□□□□ -1.64
HOXA1P49639 AC090424.1-201ENST00000535243 736 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 AC084759.1-201ENST00000561168 290 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 CMC2-208ENST00000564249 890 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
HOXA1P49639 AP003774.2-201ENST00000569737 558 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HOXA1P49639 RN7SL339P-201ENST00000580597 296 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 AC119403.2-201ENST00000590960 598 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 AC063944.3-201ENST00000609969 533 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 AC105265.3-202ENST00000610188 459 ntTSL 5 BASIC4.79□□□□□ -1.64
HOXA1P49639 AC068726.1-201ENST00000610993 341 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 AC084816.1-204ENST00000628326 631 ntTSL 5 BASIC4.79□□□□□ -1.64
HOXA1P49639 AC107398.4-201ENST00000635489 765 ntTSL 2 BASIC4.79□□□□□ -1.64
HOXA1P49639 TTC33-206ENST00000636863 1149 ntTSL 5 BASIC4.79□□□□□ -1.64
HOXA1P49639 AL596275.2-207ENST00000641188 675 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 AL596275.2-204ENST00000641628 552 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 AL596275.2-206ENST00000641957 626 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 DCDC1-207ENST00000452803 1706 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HOXA1P49639 AC112198.2-201ENST00000426589 6996 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 MUC12-202ENST00000379442 16737 ntAPPRIS ALT2 TSL 5 BASIC4.79□□□□□ -1.64
HOXA1P49639 XKR4-201ENST00000327381 19880 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HOXA1P49639 AC092821.1-201ENST00000640129 4180 ntAPPRIS P1 TSL 5 BASIC4.79□□□□□ -1.64
HOXA1P49639 AC004982.1-201ENST00000608770 1655 ntTSL 4 BASIC4.79□□□□□ -1.64
HOXA1P49639 DDX4-202ENST00000354991 2324 ntTSL 5 BASIC4.79□□□□□ -1.64
HOXA1P49639 OSGEPL1-201ENST00000264151 1885 ntAPPRIS P1 TSL 1 (best) BASIC4.79□□□□□ -1.64
HOXA1P49639 MTCO1P4-201ENST00000520516 1409 ntBASIC4.79□□□□□ -1.64
HOXA1P49639 NAT1-208ENST00000520546 1446 ntAPPRIS P1 BASIC4.79□□□□□ -1.64
HOXA1P49639 MPDZ-212ENST00000538841 3186 ntTSL 2 BASIC4.79□□□□□ -1.64
HOXA1P49639 HELLS-205ENST00000394036 3131 ntTSL 1 (best) BASIC4.79□□□□□ -1.64
HOXA1P49639 RSU1P2-203ENST00000448600 1582 ntTSL 1 (best) BASIC4.78□□□□□ -1.64
Retrieved 100 of 98,524 protein–RNA pairs in 111.3 ms