Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 LAMB4-201ENST00000205386 5857 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL6A3P12111 AL353763.1-201ENST00000624467 1628 ntBASIC5.16□□□□□ -1.58
COL6A3P12111 FAM184A-212ENST00000522284 2721 ntTSL 1 (best) BASIC5.16□□□□□ -1.58
COL6A3P12111 ATR-201ENST00000350721 8249 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL6A3P12111 AC073636.1-202ENST00000457756 558 ntTSL 4 BASIC5.16□□□□□ -1.58
COL6A3P12111 AC010255.1-201ENST00000504829 731 ntTSL 5 BASIC5.16□□□□□ -1.58
COL6A3P12111 AC115622.1-201ENST00000509628 587 ntTSL 3 BASIC5.16□□□□□ -1.58
COL6A3P12111 NPM1P41-201ENST00000512920 831 ntBASIC5.16□□□□□ -1.58
COL6A3P12111 MTND4LP31-201ENST00000514859 294 ntBASIC5.16□□□□□ -1.58
COL6A3P12111 AC007497.1-201ENST00000610421 561 ntBASIC5.16□□□□□ -1.58
COL6A3P12111 AJ009632.2-204ENST00000635621 1401 ntTSL 5 BASIC5.16□□□□□ -1.58
COL6A3P12111 MID1-203ENST00000380780 6195 ntAPPRIS P1 TSL 1 (best) BASIC5.16□□□□□ -1.58
COL6A3P12111 PCBP1-AS1-210ENST00000416395 2451 ntTSL 2 BASIC5.16□□□□□ -1.58
COL6A3P12111 SLC2A3P1-201ENST00000519666 1451 ntBASIC5.15□□□□□ -1.58
COL6A3P12111 ADAMTS9-AS1-203ENST00000471990 1606 ntTSL 2 BASIC5.15□□□□□ -1.58
COL6A3P12111 IBTK-210ENST00000610980 5195 ntTSL 5 BASIC5.15□□□□□ -1.58
COL6A3P12111 ERCC6-201ENST00000355832 8008 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL6A3P12111 MDGA2-201ENST00000357362 2965 ntTSL 5 BASIC5.15□□□□□ -1.58
COL6A3P12111 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.15□□□□□ -1.58
COL6A3P12111 RALGAPA1-202ENST00000382366 6328 ntTSL 1 (best) BASIC5.15□□□□□ -1.58
COL6A3P12111 DST-207ENST00000421834 18030 ntAPPRIS ALT2 TSL 5 BASIC5.15□□□□□ -1.58
COL6A3P12111 HIVEP3-201ENST00000372583 12193 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL6A3P12111 GNG5P2-201ENST00000372054 207 ntBASIC5.15□□□□□ -1.58
COL6A3P12111 TCEA1P3-201ENST00000443005 880 ntBASIC5.15□□□□□ -1.58
COL6A3P12111 GRIK1-AS1-205ENST00000455392 767 ntTSL 3 BASIC5.15□□□□□ -1.58
COL6A3P12111 ANK3-207ENST00000460468 677 ntTSL 3 BASIC5.15□□□□□ -1.58
COL6A3P12111 KCTD9P4-201ENST00000526766 1166 ntBASIC5.15□□□□□ -1.58
COL6A3P12111 AC024224.1-201ENST00000538284 609 ntBASIC5.15□□□□□ -1.58
COL6A3P12111 AC087286.2-201ENST00000558980 660 ntTSL 3 BASIC5.15□□□□□ -1.58
COL6A3P12111 SEC22B-201ENST00000578049 6922 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL6A3P12111 ADGRL3-213ENST00000509896 5069 ntTSL 5 BASIC5.15□□□□□ -1.58
COL6A3P12111 ARMCX5-202ENST00000372742 2647 ntAPPRIS P1 TSL 2 BASIC5.15□□□□□ -1.58
COL6A3P12111 MEGF10-203ENST00000503335 7571 ntAPPRIS P1 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL6A3P12111 NPIPB9-201ENST00000357796 2037 ntAPPRIS ALT2 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL6A3P12111 LINC01793-201ENST00000409590 2036 ntTSL 2 BASIC5.15□□□□□ -1.58
COL6A3P12111 C17orf78-204ENST00000615133 1862 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.58
COL6A3P12111 NDRG3-202ENST00000359675 2917 ntAPPRIS ALT1 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL6A3P12111 PDE6A-205ENST00000617647 4039 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL6A3P12111 RN7SKP284-201ENST00000411002 343 ntBASIC5.15□□□□□ -1.59
COL6A3P12111 LINC00427-201ENST00000412722 430 ntTSL 2 BASIC5.15□□□□□ -1.59
COL6A3P12111 FABP7P1-201ENST00000424004 391 ntBASIC5.15□□□□□ -1.59
COL6A3P12111 ATP5LP5-201ENST00000483050 299 ntBASIC5.15□□□□□ -1.59
COL6A3P12111 AC005740.3-201ENST00000520882 344 ntTSL 2 BASIC5.15□□□□□ -1.59
COL6A3P12111 OR5M11-201ENST00000528616 1020 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
COL6A3P12111 OR4C13-201ENST00000555099 1029 ntAPPRIS P1 BASIC5.15□□□□□ -1.59
COL6A3P12111 AC100847.1-201ENST00000611316 481 ntBASIC5.15□□□□□ -1.59
COL6A3P12111 LINC01358-205ENST00000625548 874 ntTSL 5 BASIC5.15□□□□□ -1.59
COL6A3P12111 TCF7L2-206ENST00000355995 4073 ntTSL 1 (best) BASIC5.15□□□□□ -1.59
COL6A3P12111 NLRP8-201ENST00000291971 3934 ntAPPRIS P3 TSL 1 (best) BASIC5.15□□□□□ -1.59
COL6A3P12111 EDA2R-203ENST00000396050 3429 ntAPPRIS ALT2 TSL 5 BASIC5.15□□□□□ -1.59
COL6A3P12111 TEK-204ENST00000519097 3836 ntTSL 2 BASIC5.15□□□□□ -1.59
COL6A3P12111 AC105046.1-201ENST00000566457 4997 ntBASIC5.15□□□□□ -1.59
COL6A3P12111 PIEZO2-201ENST00000302079 9356 ntTSL 5 BASIC5.15□□□□□ -1.59
COL6A3P12111 ITPR1-201ENST00000302640 10197 ntAPPRIS ALT1 TSL 5 BASIC5.15□□□□□ -1.59
COL6A3P12111 LMO3-225ENST00000541295 3498 ntTSL 2 BASIC5.15□□□□□ -1.59
COL6A3P12111 MAPK10-270ENST00000641102 3538 ntBASIC5.14□□□□□ -1.59
COL6A3P12111 AC016576.1-201ENST00000637153 3585 ntTSL 5 BASIC5.14□□□□□ -1.59
COL6A3P12111 HEPH-202ENST00000343002 4854 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL6A3P12111 RNA5SP90-201ENST00000364801 99 ntBASIC5.14□□□□□ -1.59
COL6A3P12111 RPL23AP59-201ENST00000399415 461 ntBASIC5.14□□□□□ -1.59
COL6A3P12111 RNU6-628P-201ENST00000410675 107 ntBASIC5.14□□□□□ -1.59
COL6A3P12111 AC087380.1-202ENST00000415970 1163 ntTSL 2 BASIC5.14□□□□□ -1.59
COL6A3P12111 LINC02528-201ENST00000417800 381 ntTSL 2 BASIC5.14□□□□□ -1.59
COL6A3P12111 AC005487.1-201ENST00000440208 665 ntTSL 5 BASIC5.14□□□□□ -1.59
COL6A3P12111 LINC00189-203ENST00000447125 783 ntTSL 3 BASIC5.14□□□□□ -1.59
COL6A3P12111 RPL7P40-201ENST00000481703 745 ntBASIC5.14□□□□□ -1.59
COL6A3P12111 IGHV4OR15-8-201ENST00000557788 353 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
COL6A3P12111 AC092078.1-201ENST00000558370 325 ntTSL 3 BASIC5.14□□□□□ -1.59
COL6A3P12111 AC135068.2-201ENST00000622410 353 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
COL6A3P12111 PRICKLE1-213ENST00000639589 5761 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
COL6A3P12111 ZBTB43-203ENST00000449886 5851 ntAPPRIS P1 TSL 3 BASIC5.14□□□□□ -1.59
COL6A3P12111 IGF2BP2-AS1-202ENST00000456447 1531 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL6A3P12111 CD163-201ENST00000359156 4268 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL6A3P12111 AC134980.1-209ENST00000639059 2317 ntTSL 2 BASIC5.14□□□□□ -1.59
COL6A3P12111 EPHA3-201ENST00000336596 5809 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL6A3P12111 PSD4-205ENST00000441564 11234 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL6A3P12111 ATP10D-201ENST00000273859 6655 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL6A3P12111 MYEF2-202ENST00000324324 10360 ntAPPRIS P3 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL6A3P12111 AP002004.1-201ENST00000532510 3530 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL6A3P12111 FBXO9-201ENST00000244426 4559 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
COL6A3P12111 ERCC6L-202ENST00000373657 4344 ntAPPRIS ALT2 TSL 2 BASIC5.14□□□□□ -1.59
COL6A3P12111 OR13G1-201ENST00000359688 1046 ntAPPRIS P1 BASIC5.14□□□□□ -1.59
COL6A3P12111 U3.10-201ENST00000364459 214 ntBASIC5.14□□□□□ -1.59
COL6A3P12111 MIR7-3-201ENST00000384898 110 ntBASIC5.14□□□□□ -1.59
COL6A3P12111 DEFB115-201ENST00000400552 267 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL6A3P12111 NPM1P36-201ENST00000415681 835 ntBASIC5.14□□□□□ -1.59
COL6A3P12111 LINC01208-202ENST00000434969 827 ntTSL 2 BASIC5.14□□□□□ -1.59
COL6A3P12111 YWHAZP2-201ENST00000440317 728 ntBASIC5.14□□□□□ -1.59
COL6A3P12111 CYCSP32-201ENST00000440548 321 ntBASIC5.14□□□□□ -1.59
COL6A3P12111 RPS5P7-201ENST00000456664 608 ntBASIC5.14□□□□□ -1.59
COL6A3P12111 RPS27AP16-201ENST00000492222 470 ntBASIC5.14□□□□□ -1.59
COL6A3P12111 AC108475.1-201ENST00000507880 950 ntBASIC5.14□□□□□ -1.59
COL6A3P12111 AC048387.1-201ENST00000518428 494 ntTSL 3 BASIC5.14□□□□□ -1.59
COL6A3P12111 PRR4-212ENST00000544994 326 ntAPPRIS ALT2 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL6A3P12111 AC084783.1-201ENST00000565846 910 ntBASIC5.14□□□□□ -1.59
COL6A3P12111 Metazoa_SRP.93-201ENST00000622525 276 ntBASIC5.14□□□□□ -1.59
COL6A3P12111 ZNF525-202ENST00000474037 3890 ntAPPRIS P1 TSL 5 BASIC5.14□□□□□ -1.59
COL6A3P12111 ATP5G3-201ENST00000284727 5484 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL6A3P12111 DICER1-201ENST00000343455 10277 ntAPPRIS P1 TSL 1 (best) BASIC5.14□□□□□ -1.59
COL6A3P12111 LINC02119-201ENST00000508853 2573 ntTSL 1 (best) BASIC5.14□□□□□ -1.59
Retrieved 100 of 98,524 protein–RNA pairs in 73.2 ms