Protein–RNA interactions for Protein: P12109

COL6A1, Collagen alpha-1(VI) chain, humanhuman

Predictions only

Length 1,028 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1P12109 FSHB-202ENST00000417547 1890 ntAPPRIS P1 TSL 5 BASIC6.73□□□□□ -1.33
COL6A1P12109 PPFIA2-203ENST00000443686 3782 ntTSL 2 BASIC6.72□□□□□ -1.33
COL6A1P12109 AC090673.1-202ENST00000356215 4617 ntTSL 2 BASIC6.72□□□□□ -1.33
COL6A1P12109 CLCN3-211ENST00000613795 5874 ntTSL 5 BASIC6.72□□□□□ -1.33
COL6A1P12109 TRIM34-204ENST00000514226 2493 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL6A1P12109 AC009804.2-201ENST00000637566 3032 ntTSL 5 BASIC6.72□□□□□ -1.33
COL6A1P12109 PABPC1P6-201ENST00000445594 1829 ntBASIC6.72□□□□□ -1.33
COL6A1P12109 ODF2-205ENST00000393527 3653 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
COL6A1P12109 AC008549.2-201ENST00000333482 706 ntBASIC6.72□□□□□ -1.33
COL6A1P12109 IARS-202ENST00000375643 4656 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL6A1P12109 TRAJ35-201ENST00000390502 59 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
COL6A1P12109 AL445238.1-204ENST00000400311 463 ntBASIC6.72□□□□□ -1.33
COL6A1P12109 RPL5P19-201ENST00000404228 893 ntBASIC6.72□□□□□ -1.33
COL6A1P12109 AL121835.1-201ENST00000404250 354 ntBASIC6.72□□□□□ -1.33
COL6A1P12109 AF064860.1-201ENST00000416555 544 ntTSL 3 BASIC6.72□□□□□ -1.33
COL6A1P12109 AL391645.1-201ENST00000417409 506 ntTSL 3 BASIC6.72□□□□□ -1.33
COL6A1P12109 NIFKP3-201ENST00000417799 865 ntBASIC6.72□□□□□ -1.33
COL6A1P12109 TMEM196-203ENST00000422233 775 ntTSL 5 BASIC6.72□□□□□ -1.33
COL6A1P12109 AL359081.1-201ENST00000432083 615 ntTSL 2 BASIC6.72□□□□□ -1.33
COL6A1P12109 POU6F2-AS1-201ENST00000433519 381 ntTSL 3 BASIC6.72□□□□□ -1.33
COL6A1P12109 KCTD10P1-201ENST00000434203 625 ntBASIC6.72□□□□□ -1.33
COL6A1P12109 SLC8A1-AS1-205ENST00000435515 497 ntTSL 3 BASIC6.72□□□□□ -1.33
COL6A1P12109 TRAPPC13P1-201ENST00000435991 1062 ntBASIC6.72□□□□□ -1.33
COL6A1P12109 AL121957.1-202ENST00000437040 329 ntTSL 3 BASIC6.72□□□□□ -1.33
COL6A1P12109 LINC02038-201ENST00000439074 702 ntTSL 4 BASIC6.72□□□□□ -1.33
COL6A1P12109 AC011742.2-201ENST00000443818 352 ntBASIC6.72□□□□□ -1.33
COL6A1P12109 AL513412.1-201ENST00000445708 553 ntTSL 4 BASIC6.72□□□□□ -1.33
COL6A1P12109 AC104457.2-201ENST00000446055 467 ntTSL 2 BASIC6.72□□□□□ -1.33
COL6A1P12109 AC055758.1-201ENST00000494509 569 ntTSL 3 BASIC6.72□□□□□ -1.33
COL6A1P12109 BMPR1B-204ENST00000502683 567 ntTSL 4 BASIC6.72□□□□□ -1.33
COL6A1P12109 NPY6R-202ENST00000510937 2988 ntTSL 3 BASIC6.72□□□□□ -1.33
COL6A1P12109 AL117351.2-201ENST00000513571 157 ntBASIC6.72□□□□□ -1.33
COL6A1P12109 AC011405.1-201ENST00000514207 248 ntTSL 3 BASIC6.72□□□□□ -1.33
COL6A1P12109 AC091979.1-201ENST00000517595 706 ntTSL 2 BASIC6.72□□□□□ -1.33
COL6A1P12109 ELOC-204ENST00000519487 814 ntAPPRIS P1 TSL 2 BASIC6.72□□□□□ -1.33
COL6A1P12109 ZFAND1-208ENST00000519523 698 ntTSL 2 BASIC6.72□□□□□ -1.33
COL6A1P12109 CTHRC1-204ENST00000520880 560 ntTSL 4 BASIC6.72□□□□□ -1.33
COL6A1P12109 HMGN2P36-201ENST00000529541 409 ntBASIC6.72□□□□□ -1.33
COL6A1P12109 AC134775.1-201ENST00000531268 464 ntTSL 2 BASIC6.72□□□□□ -1.33
COL6A1P12109 AGGF1P9-201ENST00000561884 913 ntBASIC6.72□□□□□ -1.33
COL6A1P12109 AP000919.1-202ENST00000581139 1264 ntBASIC6.72□□□□□ -1.33
COL6A1P12109 AP000919.2-202ENST00000584431 673 ntTSL 3 BASIC6.72□□□□□ -1.33
COL6A1P12109 Z98949.1-210ENST00000597548 766 ntTSL 5 BASIC6.72□□□□□ -1.33
COL6A1P12109 AC073254.1-207ENST00000600482 714 ntTSL 5 BASIC6.72□□□□□ -1.33
COL6A1P12109 FAM27E4-201ENST00000605259 342 ntBASIC6.72□□□□□ -1.33
COL6A1P12109 AC008280.3-201ENST00000606436 732 ntTSL 5 BASIC6.72□□□□□ -1.33
COL6A1P12109 AC012213.4-201ENST00000606457 354 ntBASIC6.72□□□□□ -1.33
COL6A1P12109 MIR4500HG-205ENST00000606590 579 ntTSL 4 BASIC6.72□□□□□ -1.33
COL6A1P12109 AC090425.2-201ENST00000608818 501 ntBASIC6.72□□□□□ -1.33
COL6A1P12109 AC004160.1-201ENST00000625468 929 ntTSL 5 BASIC6.72□□□□□ -1.33
COL6A1P12109 MIR3974-201ENST00000637126 96 ntBASIC6.72□□□□□ -1.33
COL6A1P12109 PDE4D-229ENST00000638939 375 ntTSL 5 BASIC6.72□□□□□ -1.33
COL6A1P12109 SCAPER-203ENST00000538941 4853 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
COL6A1P12109 SLC9A6-212ENST00000637195 4858 ntTSL 5 BASIC6.72□□□□□ -1.33
COL6A1P12109 SLCO1C1-208ENST00000545102 2868 ntTSL 2 BASIC6.72□□□□□ -1.33
COL6A1P12109 IL1RAP-212ENST00000443369 2760 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
COL6A1P12109 NCAPG2-202ENST00000409339 5253 ntTSL 1 (best) BASIC6.72□□□□□ -1.33
COL6A1P12109 EPG5-201ENST00000282041 12633 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL6A1P12109 OSBPL9P1-201ENST00000604744 1469 ntBASIC6.72□□□□□ -1.33
COL6A1P12109 FIRRE-202ENST00000637577 1635 ntTSL 5 BASIC6.72□□□□□ -1.33
COL6A1P12109 OR56B1-201ENST00000317121 2075 ntAPPRIS P1 BASIC6.72□□□□□ -1.33
COL6A1P12109 NSUN3-201ENST00000314622 3289 ntAPPRIS P1 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL6A1P12109 LRBA-201ENST00000357115 9899 ntAPPRIS P3 TSL 1 (best) BASIC6.72□□□□□ -1.33
COL6A1P12109 DNA2-208ENST00000551118 3468 ntTSL 5 BASIC6.71□□□□□ -1.33
COL6A1P12109 TRPC4-210ENST00000625583 3009 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
COL6A1P12109 AC011604.2-201ENST00000381541 2268 ntAPPRIS ALT2 TSL 2 BASIC6.71□□□□□ -1.33
COL6A1P12109 ZNF562-202ENST00000453372 2111 ntAPPRIS P3 TSL 3 BASIC6.71□□□□□ -1.33
COL6A1P12109 PHLDB2-211ENST00000481953 5474 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
COL6A1P12109 ANKS1B-207ENST00000546960 1383 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
COL6A1P12109 PAK3-203ENST00000372007 8940 ntAPPRIS P3 TSL 1 (best) BASIC6.71□□□□□ -1.33
COL6A1P12109 KLHL5-205ENST00000508137 2926 ntTSL 1 (best) BASIC6.71□□□□□ -1.33
COL6A1P12109 CDON-202ENST00000392693 9138 ntAPPRIS ALT2 TSL 1 (best) BASIC6.71□□□□□ -1.33
COL6A1P12109 ARID4A-203ENST00000395168 4051 ntTSL 5 BASIC6.71□□□□□ -1.34
COL6A1P12109 RLIMP2-201ENST00000427891 1563 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 PRDM2-202ENST00000311066 7437 ntAPPRIS ALT2 TSL 5 BASIC6.71□□□□□ -1.34
COL6A1P12109 LIPI-204ENST00000614229 1439 ntTSL 1 (best) BASIC6.71□□□□□ -1.34
COL6A1P12109 SELENOWP1-201ENST00000322792 252 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 FAM32BP-201ENST00000344033 333 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 AC234772.1-201ENST00000377927 937 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 RNU6-906P-201ENST00000384700 70 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 LIPT1P1-201ENST00000415870 1186 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 GPC5-IT1-201ENST00000416664 658 ntTSL 3 BASIC6.71□□□□□ -1.34
COL6A1P12109 AC009518.2-201ENST00000418056 731 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 MGAT2P2-201ENST00000427194 797 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 Z93403.1-202ENST00000440002 713 ntTSL 3 BASIC6.71□□□□□ -1.34
COL6A1P12109 CR769776.1-201ENST00000441254 787 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 CYCSP51-201ENST00000443545 318 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 AC092155.2-201ENST00000454675 477 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 CHRM3-AS2-203ENST00000458325 895 ntTSL 2 BASIC6.71□□□□□ -1.34
COL6A1P12109 AC008379.1-201ENST00000463655 464 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 SPRR2F-201ENST00000468739 681 ntAPPRIS P1 TSL 3 BASIC6.71□□□□□ -1.34
COL6A1P12109 DENND6A-AS1-201ENST00000470427 364 ntTSL 2 BASIC6.71□□□□□ -1.34
COL6A1P12109 PRDX3P4-201ENST00000470828 747 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 MTCO3P35-201ENST00000485582 781 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 EIF1P7-201ENST00000487533 337 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 AC114728.1-201ENST00000488289 483 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 AC008953.1-201ENST00000497334 318 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 AC026719.1-201ENST00000506059 456 ntTSL 3 BASIC6.71□□□□□ -1.34
COL6A1P12109 SNORA19.3-201ENST00000516165 130 ntBASIC6.71□□□□□ -1.34
COL6A1P12109 CDH12P4-201ENST00000517835 295 ntBASIC6.71□□□□□ -1.34
Retrieved 100 of 98,524 protein–RNA pairs in 70.4 ms