Protein–RNA interactions for Protein: Q99909

SSX3, Protein SSX3, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SSX3Q99909 RNA5SP477-201ENST00000362639 119 ntBASIC4.87□□□□□ -1.63
SSX3Q99909 RNA5SP510-201ENST00000364697 99 ntBASIC4.87□□□□□ -1.63
SSX3Q99909 IFNA21-201ENST00000380225 1024 ntAPPRIS P1 BASIC4.87□□□□□ -1.63
SSX3Q99909 CDKN3-203ENST00000395577 637 ntTSL 5 BASIC4.87□□□□□ -1.63
SSX3Q99909 SNRPEP6-201ENST00000407465 277 ntBASIC4.87□□□□□ -1.63
SSX3Q99909 RNA5SP487-201ENST00000410186 122 ntBASIC4.87□□□□□ -1.63
SSX3Q99909 RN7SKP247-201ENST00000411094 308 ntBASIC4.87□□□□□ -1.63
SSX3Q99909 AC009302.1-201ENST00000417147 390 ntBASIC4.87□□□□□ -1.63
SSX3Q99909 AC022173.1-201ENST00000418554 577 ntTSL 4 BASIC4.87□□□□□ -1.63
SSX3Q99909 GABRG3-AS1-201ENST00000439938 970 ntTSL 2 BASIC4.87□□□□□ -1.63
SSX3Q99909 AL035416.1-201ENST00000443012 767 ntTSL 2 BASIC4.87□□□□□ -1.63
SSX3Q99909 AL035530.1-201ENST00000446887 331 ntTSL 3 BASIC4.87□□□□□ -1.63
SSX3Q99909 PTMAP3-201ENST00000447474 330 ntBASIC4.87□□□□□ -1.63
SSX3Q99909 VN1R48P-201ENST00000448149 1036 ntBASIC4.87□□□□□ -1.63
SSX3Q99909 AL445466.1-201ENST00000448432 357 ntBASIC4.87□□□□□ -1.63
SSX3Q99909 RPL23AP60-201ENST00000450011 454 ntBASIC4.87□□□□□ -1.63
SSX3Q99909 Z99127.1-201ENST00000452442 670 ntTSL 5 BASIC4.87□□□□□ -1.63
SSX3Q99909 RN7SL515P-201ENST00000463999 297 ntBASIC4.87□□□□□ -1.63
SSX3Q99909 HESX1-202ENST00000473921 757 ntTSL 5 BASIC4.87□□□□□ -1.63
SSX3Q99909 AC008448.1-201ENST00000505109 584 ntTSL 5 BASIC4.87□□□□□ -1.63
SSX3Q99909 LINC02383-201ENST00000508563 582 ntTSL 3 BASIC4.87□□□□□ -1.63
SSX3Q99909 LINC02236-201ENST00000508881 552 ntTSL 4 BASIC4.87□□□□□ -1.63
SSX3Q99909 GAPDHP71-201ENST00000511530 1003 ntBASIC4.87□□□□□ -1.63
SSX3Q99909 FOXD1-AS1-201ENST00000514661 424 ntTSL 3 BASIC4.87□□□□□ -1.63
SSX3Q99909 RNU6-491P-201ENST00000516099 110 ntBASIC4.87□□□□□ -1.63
SSX3Q99909 SCARNA18.1-201ENST00000516330 83 ntBASIC4.87□□□□□ -1.63
SSX3Q99909 RNA5SP271-201ENST00000516700 88 ntBASIC4.87□□□□□ -1.63
SSX3Q99909 AZIN1-AS1-208ENST00000519257 619 ntTSL 3 BASIC4.87□□□□□ -1.63
SSX3Q99909 CETN3-206ENST00000522864 738 ntTSL 3 BASIC4.87□□□□□ -1.63
SSX3Q99909 AP000424.2-201ENST00000523784 233 ntTSL 3 BASIC4.87□□□□□ -1.63
SSX3Q99909 AC079917.1-201ENST00000527828 584 ntTSL 3 BASIC4.87□□□□□ -1.63
SSX3Q99909 AC079917.1-202ENST00000534059 625 ntTSL 3 BASIC4.87□□□□□ -1.63
SSX3Q99909 AAGAB-203ENST00000542650 1015 ntTSL 2 BASIC4.87□□□□□ -1.63
SSX3Q99909 AC079950.1-201ENST00000551229 568 ntTSL 4 BASIC4.87□□□□□ -1.63
SSX3Q99909 AL162464.1-201ENST00000557642 554 ntTSL 5 BASIC4.87□□□□□ -1.63
SSX3Q99909 LINC01895-201ENST00000558690 404 ntTSL 5 BASIC4.87□□□□□ -1.63
SSX3Q99909 AC012414.2-201ENST00000559474 187 ntBASIC4.87□□□□□ -1.63
SSX3Q99909 AL163952.1-202ENST00000569625 600 ntBASIC4.87□□□□□ -1.63
SSX3Q99909 RNU4ATAC-201ENST00000580972 127 ntBASIC4.87□□□□□ -1.63
SSX3Q99909 AC023932.1-201ENST00000582726 429 ntTSL 3 BASIC4.87□□□□□ -1.63
SSX3Q99909 AC005288.1-201ENST00000582842 860 ntTSL 2 BASIC4.87□□□□□ -1.63
SSX3Q99909 AC060780.2-201ENST00000589047 198 ntBASIC4.87□□□□□ -1.63
SSX3Q99909 AC020916.2-201ENST00000591242 360 ntBASIC4.87□□□□□ -1.63
SSX3Q99909 AC006115.2-201ENST00000596823 202 ntBASIC4.87□□□□□ -1.63
SSX3Q99909 ZNF528-211ENST00000598192 625 ntTSL 3 BASIC4.87□□□□□ -1.63
SSX3Q99909 AC010998.2-201ENST00000605549 625 ntTSL 5 BASIC4.87□□□□□ -1.63
SSX3Q99909 AC092902.2-219ENST00000608488 822 ntTSL 5 BASIC4.87□□□□□ -1.63
SSX3Q99909 MALAT1-205ENST00000610851 584 ntTSL 2 BASIC4.87□□□□□ -1.63
SSX3Q99909 AL136228.1-201ENST00000622221 319 ntBASIC4.87□□□□□ -1.63
SSX3Q99909 MTERF1-203ENST00000419292 3882 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
SSX3Q99909 ANO6-205ENST00000441606 5955 ntAPPRIS ALT2 TSL 1 (best) BASIC4.87□□□□□ -1.63
SSX3Q99909 SLCO1A2-212ENST00000458504 2008 ntTSL 2 BASIC4.87□□□□□ -1.63
SSX3Q99909 SERPINA9-204ENST00000424550 1462 ntTSL 1 (best) BASIC4.87□□□□□ -1.63
SSX3Q99909 HELLS-204ENST00000371332 2675 ntTSL 5 BASIC4.87□□□□□ -1.63
SSX3Q99909 PDS5B-201ENST00000315596 7497 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SSX3Q99909 FTO-203ENST00000460382 1517 ntTSL 5 BASIC4.87□□□□□ -1.63
SSX3Q99909 LRRC49-201ENST00000260382 2784 ntAPPRIS P3 TSL 1 (best) BASIC4.87□□□□□ -1.63
SSX3Q99909 GRAMD2B-210ENST00000511134 1577 ntTSL 2 BASIC4.87□□□□□ -1.63
SSX3Q99909 ZNF573-217ENST00000590414 2225 ntAPPRIS P1 TSL 1 (best) BASIC4.87□□□□□ -1.63
SSX3Q99909 PCDH15-206ENST00000373965 9237 ntAPPRIS ALT2 TSL 5 BASIC4.87□□□□□ -1.63
SSX3Q99909 ZFAND6-223ENST00000616533 1653 ntAPPRIS P1 TSL 5 BASIC4.86□□□□□ -1.63
SSX3Q99909 ASB14-201ENST00000389601 3175 ntAPPRIS ALT2 TSL 5 BASIC4.86□□□□□ -1.63
SSX3Q99909 CLHC1-203ENST00000406076 1777 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SSX3Q99909 AC018557.1-201ENST00000569274 1790 ntTSL 5 BASIC4.86□□□□□ -1.63
SSX3Q99909 RNF6-202ENST00000381570 3398 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SSX3Q99909 CTDSPL2-204ENST00000558966 1895 ntAPPRIS P1 TSL 1 (best) BASIC4.86□□□□□ -1.63
SSX3Q99909 CASC15-206ENST00000606851 1889 ntTSL 2 BASIC4.86□□□□□ -1.63
SSX3Q99909 KCNH7-205ENST00000621889 1893 ntTSL 5 BASIC4.86□□□□□ -1.63
SSX3Q99909 CASC19-284ENST00000642142 1868 ntBASIC4.86□□□□□ -1.63
SSX3Q99909 RGPD1-206ENST00000641458 5271 ntAPPRIS ALT2 BASIC4.86□□□□□ -1.63
SSX3Q99909 CCDC178-209ENST00000579947 2925 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
SSX3Q99909 OR10A2-201ENST00000307322 1053 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
SSX3Q99909 OR10R3P-201ENST00000361688 942 ntBASIC4.86□□□□□ -1.63
SSX3Q99909 RNA5SP273-201ENST00000362484 113 ntBASIC4.86□□□□□ -1.63
SSX3Q99909 IFNB1-201ENST00000380232 859 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
SSX3Q99909 RNA5SP122-201ENST00000384457 108 ntBASIC4.86□□□□□ -1.63
SSX3Q99909 TRAV23DV6-201ENST00000390451 409 ntAPPRIS P1 BASIC4.86□□□□□ -1.63
SSX3Q99909 RNU2-50P-201ENST00000410494 143 ntBASIC4.86□□□□□ -1.63
SSX3Q99909 AL590609.3-201ENST00000411815 210 ntTSL 3 BASIC4.86□□□□□ -1.63
SSX3Q99909 NPM1P40-201ENST00000412758 733 ntBASIC4.86□□□□□ -1.63
SSX3Q99909 SLC20A1P1-201ENST00000413906 956 ntBASIC4.86□□□□□ -1.63
SSX3Q99909 GAS5-202ENST00000414075 413 ntTSL 2 BASIC4.86□□□□□ -1.63
SSX3Q99909 AL645465.1-201ENST00000417765 642 ntTSL 3 BASIC4.86□□□□□ -1.63
SSX3Q99909 KCNMA1-AS3-201ENST00000418515 701 ntTSL 3 BASIC4.86□□□□□ -1.63
SSX3Q99909 HAO2-IT1-201ENST00000419144 311 ntTSL 5 BASIC4.86□□□□□ -1.63
SSX3Q99909 AC034195.1-201ENST00000420000 559 ntTSL 4 BASIC4.86□□□□□ -1.63
SSX3Q99909 RPS3P2-201ENST00000421346 701 ntBASIC4.86□□□□□ -1.63
SSX3Q99909 AC078960.1-201ENST00000422160 177 ntTSL 5 BASIC4.86□□□□□ -1.63
SSX3Q99909 TRAPPC2P5-201ENST00000426293 308 ntBASIC4.86□□□□□ -1.63
SSX3Q99909 TEX41-206ENST00000432608 661 ntTSL 3 BASIC4.86□□□□□ -1.63
SSX3Q99909 MRPS33P4-201ENST00000434892 317 ntBASIC4.86□□□□□ -1.63
SSX3Q99909 AC023481.1-201ENST00000435368 938 ntTSL 3 BASIC4.86□□□□□ -1.63
SSX3Q99909 NPM1P33-201ENST00000438918 872 ntBASIC4.86□□□□□ -1.63
SSX3Q99909 CCDC17-203ENST00000445048 443 ntAPPRIS ALT2 TSL 1 (best) BASIC4.86□□□□□ -1.63
SSX3Q99909 AC005772.1-201ENST00000446671 976 ntTSL 1 (best) BASIC4.86□□□□□ -1.63
SSX3Q99909 MTND2P3-201ENST00000452458 470 ntBASIC4.86□□□□□ -1.63
SSX3Q99909 HGF-207ENST00000453018 721 ntTSL 3 BASIC4.86□□□□□ -1.63
SSX3Q99909 AC016724.1-201ENST00000453215 421 ntBASIC4.86□□□□□ -1.63
SSX3Q99909 TPRKBP1-201ENST00000456243 481 ntBASIC4.86□□□□□ -1.63
SSX3Q99909 AC004692.2-201ENST00000457315 355 ntTSL 3 BASIC4.86□□□□□ -1.63
Retrieved 100 of 98,524 protein–RNA pairs in 124.7 ms